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| Field | Value |
|---|---|
| Gene ID | LotjaGi4g1v0085300 |
| Transcript ID | LotjaGi4g1v0085300.2 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | SBP (S-ribonuclease-binding protein) family protein; TAIR: AT5G45100.1 SBP (S-ribonuclease binding protein) family protein; Swiss-Prot: sp|Q9FHE4|BRG1_ARATH BOI-related E3 ubiquitin-protein ligase 1; TrEMBL-Plants: tr|A0A0S3R2J4|A0A0S3R2J4_PHAAN Uncharacterized protein; Found in the gene: LotjaGi4g1v0085300 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:11253163..11254578) extracted from Lotus japonicus Gifu genome v1.2.
GTCGCCACCCCATTTGCATGTGAATTGTGAATTGTGAAATTCTCCCTCCCATTTTCATTCCCTTCATTTTCCTCCTCACC AGTCACCCCCTTTGCATTTTCAAGAAGAAACAGAGTAACCATACATAACCAACTCTCATCATGGCAGTTGAAACTCCTCA CATGAATACTCTCCTTCAGTTACTCACAAACAGGTAATTATTTTCCTTCCATTTTCTGTTTCTGTTTTCTCTCCATTTTC CATCTCATTATATCAATTGCTTTTGTTCATTTTCCACAGAGAAATGTTCAATCTCAACAACAACAATCACTTTTTCTACA ACCCCCAAATGGCCATGGATGGTTCCTCAGTTCCTCTCTCTTCTTCACCCTTCTGGGATCCAACCTCCATCAACAAAGCT GTTACCGGAAGGAAGCGACCCAGAGACAACAACAACAACAACAACTCCATCGCTGAATCACCATTTCTTGACCAAAACCT TCAGTATCAAATCCACACCCACCAATCCGAGATCGATCGATTCATCGCTCAACATGTAATTTTCTCCAATTTTTTTCACC ATAACCGTGTAACTGAATTCAAGAGTTTTGAAATTTCAAATTGAATTGTTTGTTTGATTGTTAGATTTTTTTGTTACTGA TTTTCTTTCTTCTGTTATTGTTGTAACAGACGGAGAAAATGCTGAAGGAGTTAGAAGAGCAACAACTGCGTCAATCAAGA GCGTTACTCTCGGCGGTTCAAGAAGCAATGTTGAAGAAGATGAAGGAGAAAGACGACGAGATTCAGAAACTCGCTAAGGT GAATTTCGTCCTGCATGAAAGAGTGAACAGCCTCTGCGAGGAGAATCAGATTTGGAGGGAGCTAGCACAGGCGCATGAAG CCGCCGTGATTTCCCTGCGTTCCGACTTGGAACAGGTGCTGGCGCACGTTAGTGATAGCCACCGCGGCGCGGCGGCGGAG GAGGAAGATGATGCTGAGTCGAGTTGCGGCAGCAACCACCACCGTGAGGAGGAGGAGGAGGAAAACGAGGCGGTGGGGAA TTTGTGCAGGGAGTGTGGGGCCCAGGAATCGGGAGTACTGTTACTGCCATGTAGGCATTTGTGTCTGTGTACGACGTGTG GGTCCACCGTTCGTAATTGCCCTCTTTGTCATTCTGCCATCAATGCTAGCGTACATGTCAATTTCTCTTAGAAATTTAGA AATTTACATTTTCCATATTGGATTTTACACCATCCAATAACTAGACTTGTTACTAGTAGTTGTTAGCAAAAGAAAACAAA TTGACTTTACAATTCTTTTGTTATTAATATAGATATATTTTTTTTTTTTGGTGCTTCGGAAAAAGATATTTTTTGCCTAT GATGCTCATATATTTTTTTTTCTGCATGTTTTGGGATGGAGATATTTATTATTTCT
CDS sequence (LotjaGi4g1v0085300.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCAGTTGAAACTCCTCACATGAATACTCTCCTTCAGTTACTCACAAACAGAGAAATGTTCAATCTCAACAACAACAA TCACTTTTTCTACAACCCCCAAATGGCCATGGATGGTTCCTCAGTTCCTCTCTCTTCTTCACCCTTCTGGGATCCAACCT CCATCAACAAAGCTGTTACCGGAAGGAAGCGACCCAGAGACAACAACAACAACAACAACTCCATCGCTGAATCACCATTT CTTGACCAAAACCTTCAGTATCAAATCCACACCCACCAATCCGAGATCGATCGATTCATCGCTCAACATACGGAGAAAAT GCTGAAGGAGTTAGAAGAGCAACAACTGCGTCAATCAAGAGCGTTACTCTCGGCGGTTCAAGAAGCAATGTTGAAGAAGA TGAAGGAGAAAGACGACGAGATTCAGAAACTCGCTAAGGTGAATTTCGTCCTGCATGAAAGAGTGAACAGCCTCTGCGAG GAGAATCAGATTTGGAGGGAGCTAGCACAGGCGCATGAAGCCGCCGTGATTTCCCTGCGTTCCGACTTGGAACAGGTGCT GGCGCACGTTAGTGATAGCCACCGCGGCGCGGCGGCGGAGGAGGAAGATGATGCTGAGTCGAGTTGCGGCAGCAACCACC ACCGTGAGGAGGAGGAGGAGGAAAACGAGGCGGTGGGGAATTTGTGCAGGGAGTGTGGGGCCCAGGAATCGGGAGTACTG TTACTGCCATGTAGGCATTTGTGTCTGTGTACGACGTGTGGGTCCACCGTTCGTAATTGCCCTCTTTGTCATTCTGCCAT CAATGCTAGCGTACATGTCAATTTCTCTTAG
Protein sequence (LotjaGi4g1v0085300.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MAVETPHMNTLLQLLTNREMFNLNNNNHFFYNPQMAMDGSSVPLSSSPFWDPTSINKAVTGRKRPRDNNNNNNSIAESPF LDQNLQYQIHTHQSEIDRFIAQHTEKMLKELEEQQLRQSRALLSAVQEAMLKKMKEKDDEIQKLAKVNFVLHERVNSLCE ENQIWRELAQAHEAAVISLRSDLEQVLAHVSDSHRGAAAEEEDDAESSCGSNHHREEEEEENEAVGNLCRECGAQESGVL LLPCRHLCLCTTCGSTVRNCPLCHSAINASVHVNFS
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 55 | 275 | 221 | 3.1E-84 | – | |
| MobiDBLite | 55 | 77 | 23 | - | – | |
| PANTHER | 55 | 275 | 221 | 3.1E-84 | ||
| MobiDBLite | 191 | 220 | 30 | - | – | |
| MobiDBLite | 194 | 220 | 27 | - | – | |
| Gene3D | 203 | 275 | 73 | 3.3E-12 | ||
| Pfam | 227 | 268 | 42 | 1.1E-8 | – | |
| ProSiteProfiles | 229 | 264 | 36 | 8.949 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi4g1v0085300.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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