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| Field | Value |
|---|---|
| Gene ID | LotjaGi4g1v0085700 |
| Transcript ID | LotjaGi4g1v0085700.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Pentatricopeptide repeat-containing protein family; TAIR: AT4G18520.1 Pentatricopeptide repeat (PPR) superfamily protein; Swiss-Prot: sp|Q0WNP3|PP319_ARATH Pentatricopeptide repeat-containing protein At4g18520; TrEMBL-Plants: tr|K7N0X2|K7N0X2_SOYBN Uncharacterized protein; Found in the gene: LotjaGi4g1v0085700 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:11298353..11302617) extracted from Lotus japonicus Gifu genome v1.2.
GAGGGACTAGTAGCCGTGACCGTGACAAATATATATATCTGACAGGACAGGGGAGGCCTCCTTATCCTTGCCCACCTTCA CCGCAGTTCCTCTTCCTCTTCTTCCCCACTCCACACTTTAGCCTCAAAAGTAGTTTCCGTATACAAAACATGGAGTTAGG AGCTGCTATTCTTCAATCGCCATGTTCACTTCCACCAAGGTTTCCCACTCTCAAACCCGCTGCAGATTTTGCTTCTCCCT TCTCCTTATTCATCTCAAATTCACTTCGACCTTCATGCTTATCTCTTGCTCACAAAGGTTAGTTCAGTACAGTTACTAAT TTTCCACTCAAATTTATACCATGTTTGGTTCTGCATTATATTGGGATAGGTTTAGCAGAATGCTAAGTATTACTGGTAAA GTGGGGAATGCAAATTATTTAGAAAATTATTTAATACTTGTTAGTTGTTATTTGAGTTAAGTGAAGATATTTAACTGATT GAATCGGTGTTCGTACCTGTTAGCAAGATTTTGGAAAACAGCTTAGTTAAGCGCTTATGAGTTATGACCATATTTTAAAA AAAATTATCCAAATAAGTTGAAAATATGTTATAAGTAAGTATAAGCTCTTTTTCATAAGCTATTCTGGCCAGCTTATGAA AATAAGCTCAAAATAGCTTATAGGTAGGCAGGCCATAAACTATTTACATAAGCTCTCCCAAACATTTGCATAAGCGCTTA TGCTATAAGATATGCTCAAATAAGCTCTTCCGAACAGAGCCTTTAAGTTTTAAATTAGCTACTGGACCTGTTACATGAGA TGAGAGGGTCCTAATTCGTAATGTAATAACAGCTTGTTACATGTTCAAGCAGATCAGCAGTATTCCTTTCCAACTGCTGC TAGTGCTCGTGTCACCACTGGGGAAATGTTGAATTGTGTTTGCTTGTGTACTACCGGTACCACTGATGCTGCTAGTTCTT GTGATGATTCCGATAGAGGTGATGAGGAAAGGGACGATGAAGATGGCATGGGGTTCTTGGATAATGACCAAATGATTAGA GACTGTGATGAGCTAATTGAGGCTTTCATGGTGGACAAGCCTGCCTTGAGTGTTTGGAGGGCGTTATTAGTTTTCAACAA GAATTGGAGTAATATCAGGCTCCAATTTTTTAGATACTTCCAAGATAGAATAAACTCCGAAGACAATCCGCTGGTGAAGA AGAAGCTGCTCTTGCTTGGAAAGAAGCTTAAAGAGGTCTGTCGTTTGTGATTGAAATTTATACTCATCACTTTATGTCAG TATGGTATTGGTGACTAATGCAAAACTAGCTAGCAAAATTCTGTCTATTATCTAACATTCATTTCCCCTATTTAGTATCA TTTTTTTTGGAATCTGTTGAATTCTAAATACATACTTGCTGCTGTATTTCACAGTACAAGGATAATGTTCACTAAATTCA TTAGAAAAGATGTATTATTGTAGAAAACAAAGTAAGAAATGTGATTAATGTAGGAAACTTTTTATAGAGATTATAATATT CCTTTAAGTTTGTTGTTCTCTGCTTTTATTATGCACAAATTTATTTATTACTCCTCTTCTGCAGATAGATGAAGATGTAC AGAGGCACAATGAGCTTATTGAGGTGATCAAAGGGACTCCATCTGAAATTAGTGAAATTGTCTCCAGGAGTCGTAAAGAT TTCACAAAAGAATTCTTCGTGCATCTTCATACTCTAGTTGAATCTTACAGTGACGATCCAAAAGCACAAAATGGTGAGAC TGAATGCTTTCAGTTCCAATTCAATTTTTATCTAACAATATTTTTAGCTTTTAAATACCCATATAAGCTGAATGATATCC ATTTTGATGGTAGTGCTTTTCAAGTCTCTAGAGTTGATTCAGTTTAGAATTGTTTAATACTTTATGTTGGTGTTTTTCTA TATTCATATCAAAATTATTCACCTCAAAGCGGTATTCCATTTTCATTCCTGTCGTTCCAAAATTTCTTCAAACATTGAGA TCATCAAGAACTTATCTAGGTTACCTAACTGTGATCTTTAAGCCTTAAGATTTTTATGTCTGTGCATCATAGAAATCCTA TAGTACTTTCCACATTGTAATAGAAAAGTCAATTTTACTGGCTAGTTCAAATATCCCTCTTAATCTGGTATTTATATCAC CATTATGTTTATGTGACAAGATTTGGAAAAGCTTCGGAGTACATGCATGGCTGCTGTGAAAGTCTATGATGCTGCAACTG AAAGGGCTGAAACACTAAATGCTGTACAGTTGAACTATGATAGAATCCGCTCTACCCTGGATTCTTCAGGCAGGAAGATA GACAATTTGGCTGAGAATAGTCAGTGTTTTGAACCAGAATTAGTAGGTCGTTGGTTACAGCTGTGTTGTGATGTGGAAGA AGTAGGAAGGGTACACACAATTATCTTGAAAAGTTATAGAGATTCTGTCACTTATGTTGATAATAATTTGATCTGTAGTT ATTTGAGATTGGGAAAGCTAGCTCAGGCTCGTAGAGTGTTTGACAGCATGGCAAGAAGGAACACAGTTACATGGACTGCT ATTATTGATGGGTATTTAAAATACAACTTGGATGATGAAGCTTTTAATTTATTTCAAGATTCCATTGAGAATGGGGTTCA GGCAAACAGTAAGATGCTGGTCTGTCTCATGAATTTGTGTTCTAAAAGAGTGGATTTAGCTCTGGGAAAACAAATCCATG CACATATCTTGAAAAGCAAGTGGAGGAATTTAATTGTTGACAATGCAGTTGTAAATTTTTATGCAAAATGTGGGAAGATA TCAAGTGCATTTCGAACATTTGATCGAATGGCAAAGCGAGATGTCGTATGTTGGACAACTATAATTACTGCTTGTTCCCA ACAAGGGCTTGGACATGAAGCCTTGTTGATATTGTCCCAAATGCTAGTTGATGGGTTCTTTCCTAATGAATATACTATAT GTGCTGCACTAAAGGCTTGTGGAGAGAACACAACTTTGAAATTTGGGAAACAGCTGCATGGTGCCATAGTAAAGAAAATC TGTAAAAGTGATGTTTTTATAGGAACTTCCCTAGTGGATATGTATGCAAAATGTGGGGAGATGGTGAATTCCAAAGAAGT GTTTGATAGAATGACTATTAGAAACACAGCTACTTGGACCTCCATTATATCAGGATATGCTAGAAATGGGTTTGGTGAAG AGGCTATAGGCTTATTTCAACTAATGAGGAGGAAAAAAGTTCAAATTAATAAAATGACAATTGTAAGCCTCATGGTTGCT TGTGGCACAATTAAAGCTTCGCTCGTTGGAAGAGAAGTTCATGCGCAGATAATCAGAAGTGTTCTTCATACTAACATGCA CATAGGAAGTACTTTGGTGTGGTTCTATTGCAAATGTAAGGATTATTCTCATGCTATCAAGGTGCTGCAACATATGCCTT ATAGGGATGTTGTTTCATGGACTGCCATTATCTCTGGGTGTACTAGGCTTGGGCTTGAATCTGAGGCACTGGAGTTTTTG CAGGAAATGATGGAGGAAGGGGTGTCACCTAATAACTATACCTACTCGTCAGCTCTGAAAGCGTGTGCGAAGTTAGAAGC TCCAATGCAAGGAAAACTGATTCATTCCTATGCAAGCAAGAACCCTGCGTTGGCTGATGTTTTTGTAAACAGTGCTTTAA TATATATGTATGCAAAATGCGGATATGTTGCTGACGCTTTTCAAGTGTTTGACAACATGCCTGAGAGGAACTTGGTTTCT TGGAAAGCCATGATCCTAGGCTATGCAAGGAATGGGCATTCTGGAGAGGCTCTGAAGCTCATGTATAGGATGCGAGCTGA AGGTTTTGTGGTAGATGAGTATATCCTTGCAACTGTGATTACTGCGTGTGGAGGCATTGAGTGTGTAGAACTTGATTGGG ATATTGAGTCTACTTCACATTACTCGCATTCTTCCTAATCTTCTACTAGGTAGGAGCACTAATACGCCTGAACATTGTAA TAGAAGTGGAAACACCTAGTTAGATGTATATCAGCTAATAGATTGTGTATATGCAGTGAAGGAGGAGGATATAGAAAGAT TTTGAGAGATGTGCCACCAAATTTTAGTGTTGACCTTCATTTGTTATTGTTGTTTTATAAAGTGAATGATTTTTTGCAAA TTTTTTCCACCTATATACCTTCATTTAACAAATTTTCTCATACTTATCACATTTTATATTAACCAACCACAACTCTTCTC TATCAACTACATTATTATATTTCCA
CDS sequence (LotjaGi4g1v0085700.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGAGTTAGGAGCTGCTATTCTTCAATCGCCATGTTCACTTCCACCAAGGTTTCCCACTCTCAAACCCGCTGCAGATTT TGCTTCTCCCTTCTCCTTATTCATCTCAAATTCACTTCGACCTTCATGCTTATCTCTTGCTCACAAAGATCAGCAGTATT CCTTTCCAACTGCTGCTAGTGCTCGTGTCACCACTGGGGAAATGTTGAATTGTGTTTGCTTGTGTACTACCGGTACCACT GATGCTGCTAGTTCTTGTGATGATTCCGATAGAGGTGATGAGGAAAGGGACGATGAAGATGGCATGGGGTTCTTGGATAA TGACCAAATGATTAGAGACTGTGATGAGCTAATTGAGGCTTTCATGGTGGACAAGCCTGCCTTGAGTGTTTGGAGGGCGT TATTAGTTTTCAACAAGAATTGGAGTAATATCAGGCTCCAATTTTTTAGATACTTCCAAGATAGAATAAACTCCGAAGAC AATCCGCTGGTGAAGAAGAAGCTGCTCTTGCTTGGAAAGAAGCTTAAAGAGATAGATGAAGATGTACAGAGGCACAATGA GCTTATTGAGGTGATCAAAGGGACTCCATCTGAAATTAGTGAAATTGTCTCCAGGAGTCGTAAAGATTTCACAAAAGAAT TCTTCGTGCATCTTCATACTCTAGTTGAATCTTACAGTGACGATCCAAAAGCACAAAATGATTTGGAAAAGCTTCGGAGT ACATGCATGGCTGCTGTGAAAGTCTATGATGCTGCAACTGAAAGGGCTGAAACACTAAATGCTGTACAGTTGAACTATGA TAGAATCCGCTCTACCCTGGATTCTTCAGGCAGGAAGATAGACAATTTGGCTGAGAATAGTCAGTGTTTTGAACCAGAAT TAGTAGGTCGTTGGTTACAGCTGTGTTGTGATGTGGAAGAAGTAGGAAGGGTACACACAATTATCTTGAAAAGTTATAGA GATTCTGTCACTTATGTTGATAATAATTTGATCTGTAGTTATTTGAGATTGGGAAAGCTAGCTCAGGCTCGTAGAGTGTT TGACAGCATGGCAAGAAGGAACACAGTTACATGGACTGCTATTATTGATGGGTATTTAAAATACAACTTGGATGATGAAG CTTTTAATTTATTTCAAGATTCCATTGAGAATGGGGTTCAGGCAAACAGTAAGATGCTGGTCTGTCTCATGAATTTGTGT TCTAAAAGAGTGGATTTAGCTCTGGGAAAACAAATCCATGCACATATCTTGAAAAGCAAGTGGAGGAATTTAATTGTTGA CAATGCAGTTGTAAATTTTTATGCAAAATGTGGGAAGATATCAAGTGCATTTCGAACATTTGATCGAATGGCAAAGCGAG ATGTCGTATGTTGGACAACTATAATTACTGCTTGTTCCCAACAAGGGCTTGGACATGAAGCCTTGTTGATATTGTCCCAA ATGCTAGTTGATGGGTTCTTTCCTAATGAATATACTATATGTGCTGCACTAAAGGCTTGTGGAGAGAACACAACTTTGAA ATTTGGGAAACAGCTGCATGGTGCCATAGTAAAGAAAATCTGTAAAAGTGATGTTTTTATAGGAACTTCCCTAGTGGATA TGTATGCAAAATGTGGGGAGATGGTGAATTCCAAAGAAGTGTTTGATAGAATGACTATTAGAAACACAGCTACTTGGACC TCCATTATATCAGGATATGCTAGAAATGGGTTTGGTGAAGAGGCTATAGGCTTATTTCAACTAATGAGGAGGAAAAAAGT TCAAATTAATAAAATGACAATTGTAAGCCTCATGGTTGCTTGTGGCACAATTAAAGCTTCGCTCGTTGGAAGAGAAGTTC ATGCGCAGATAATCAGAAGTGTTCTTCATACTAACATGCACATAGGAAGTACTTTGGTGTGGTTCTATTGCAAATGTAAG GATTATTCTCATGCTATCAAGGTGCTGCAACATATGCCTTATAGGGATGTTGTTTCATGGACTGCCATTATCTCTGGGTG TACTAGGCTTGGGCTTGAATCTGAGGCACTGGAGTTTTTGCAGGAAATGATGGAGGAAGGGGTGTCACCTAATAACTATA CCTACTCGTCAGCTCTGAAAGCGTGTGCGAAGTTAGAAGCTCCAATGCAAGGAAAACTGATTCATTCCTATGCAAGCAAG AACCCTGCGTTGGCTGATGTTTTTGTAAACAGTGCTTTAATATATATGTATGCAAAATGCGGATATGTTGCTGACGCTTT TCAAGTGTTTGACAACATGCCTGAGAGGAACTTGGTTTCTTGGAAAGCCATGATCCTAGGCTATGCAAGGAATGGGCATT CTGGAGAGGCTCTGAAGCTCATGTATAGGATGCGAGCTGAAGGTTTTGTGGTAGATGAGTATATCCTTGCAACTGTGATT ACTGCGTGTGGAGGCATTGAGTGTGTAGAACTTGATTGGGATATTGAGTCTACTTCACATTACTCGCATTCTTCCTAA
Protein sequence (LotjaGi4g1v0085700.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MELGAAILQSPCSLPPRFPTLKPAADFASPFSLFISNSLRPSCLSLAHKDQQYSFPTAASARVTTGEMLNCVCLCTTGTT DAASSCDDSDRGDEERDDEDGMGFLDNDQMIRDCDELIEAFMVDKPALSVWRALLVFNKNWSNIRLQFFRYFQDRINSED NPLVKKKLLLLGKKLKEIDEDVQRHNELIEVIKGTPSEISEIVSRSRKDFTKEFFVHLHTLVESYSDDPKAQNDLEKLRS TCMAAVKVYDAATERAETLNAVQLNYDRIRSTLDSSGRKIDNLAENSQCFEPELVGRWLQLCCDVEEVGRVHTIILKSYR DSVTYVDNNLICSYLRLGKLAQARRVFDSMARRNTVTWTAIIDGYLKYNLDDEAFNLFQDSIENGVQANSKMLVCLMNLC SKRVDLALGKQIHAHILKSKWRNLIVDNAVVNFYAKCGKISSAFRTFDRMAKRDVVCWTTIITACSQQGLGHEALLILSQ MLVDGFFPNEYTICAALKACGENTTLKFGKQLHGAIVKKICKSDVFIGTSLVDMYAKCGEMVNSKEVFDRMTIRNTATWT SIISGYARNGFGEEAIGLFQLMRRKKVQINKMTIVSLMVACGTIKASLVGREVHAQIIRSVLHTNMHIGSTLVWFYCKCK DYSHAIKVLQHMPYRDVVSWTAIISGCTRLGLESEALEFLQEMMEEGVSPNNYTYSSALKACAKLEAPMQGKLIHSYASK NPALADVFVNSALIYMYAKCGYVADAFQVFDNMPERNLVSWKAMILGYARNGHSGEALKLMYRMRAEGFVVDEYILATVI TACGGIECVELDWDIESTSHYSHSS
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| MobiDBLite | 81 | 103 | 23 | - | – | |
| Gene3D | 244 | 421 | 178 | 8.5E-17 | ||
| PANTHER | 312 | 512 | 201 | 1.5E-90 | – | |
| ProSiteProfiles | 323 | 353 | 31 | 7.158 | ||
| Pfam | 328 | 354 | 27 | 0.062 | ||
| ProSiteProfiles | 354 | 388 | 35 | 9.986 | ||
| TIGRFAM | 356 | 389 | 34 | 5.2E-4 | ||
| Pfam | 356 | 386 | 31 | 4.4E-4 | ||
| Gene3D | 422 | 510 | 89 | 8.6E-17 | ||
| ProSiteProfiles | 423 | 453 | 31 | 7.98 | ||
| TIGRFAM | 428 | 456 | 29 | 0.003 | ||
| ProSiteProfiles | 454 | 488 | 35 | 10.205 | ||
| Pfam | 454 | 500 | 47 | 1.8E-7 | ||
| TIGRFAM | 456 | 490 | 35 | 1.9E-5 | ||
| PANTHER | 507 | 603 | 97 | 1.5E-90 | – | |
| Gene3D | 511 | 607 | 97 | 3.0E-18 | ||
| ProSiteProfiles | 524 | 554 | 31 | 7.224 | ||
| Pfam | 529 | 552 | 24 | 0.073 | ||
| ProSiteProfiles | 555 | 589 | 35 | 11.279 | ||
| TIGRFAM | 558 | 590 | 33 | 2.5E-7 | ||
| Pfam | 558 | 586 | 29 | 2.1E-8 | ||
| Gene3D | 608 | 714 | 107 | 6.2E-21 | ||
| PANTHER | 609 | 704 | 96 | 1.5E-90 | – | |
| ProSiteProfiles | 625 | 655 | 31 | 6.182 | ||
| Pfam | 656 | 704 | 49 | 7.0E-13 | ||
| ProSiteProfiles | 656 | 690 | 35 | 12.671 | ||
| TIGRFAM | 658 | 691 | 34 | 4.3E-8 | ||
| PANTHER | 696 | 813 | 118 | 1.5E-90 | – | |
| Gene3D | 715 | 807 | 93 | 7.5E-19 | ||
| ProSiteProfiles | 726 | 756 | 31 | 8.561 | ||
| Pfam | 731 | 757 | 27 | 0.0072 | ||
| TIGRFAM | 731 | 759 | 29 | 0.0022 | ||
| ProSiteProfiles | 757 | 791 | 35 | 10.731 | ||
| TIGRFAM | 759 | 793 | 35 | 9.9E-6 | ||
| Pfam | 759 | 789 | 31 | 7.2E-6 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of LotjaGi4g1v0085700.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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