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| Field | Value |
|---|---|
| Gene ID | LotjaGi4g1v0085800 |
| Transcript ID | LotjaGi4g1v0085800.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Pectin lyase-like superfamily protein; TAIR: AT2G43870.1 Pectin lyase-like superfamily protein; Swiss-Prot: sp|P48979|PGLR_PRUPE Polygalacturonase; TrEMBL-Plants: tr|G7JIR7|G7JIR7_MEDTR Polygalacturonase; Found in the gene: LotjaGi4g1v0085800 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:11303094..11305669) extracted from Lotus japonicus Gifu genome v1.2.
CCCCCACTACCTTCTTCGACCACTCCATCTTCCAATTCCAACTCCTTATATTATCTCTATTCCAAATCTCACATCTTCAA TACTATTCCACCAAATTCCAAAAATGCTAAACTCAATCTCAAAACTAAGTCCTCTTGCAAATACTCTTGTTTTTCTTGTG ACCCTTTACTTAGCCACGGCCAATGCAGCAGCAGCCTCCTATAATGTGGTCAGTTTCGGAGCCAAACCGGACGGCCGCAC CGATTCCACAAAGGCCTTCCTAAGTGCATGGAACAGAGCTTGCACCTCGCGCAACCCCGCGGCAATTTATGTGCCGCAGG GGCGGTTCTTGCTTGGAAGTGCAACCTTTCAAGGAAAATATTGTAAAGGTGTTTCAATTACTATTGATGGCACCTTGGTG GCTCCCTCGGATTACCGCGTGATCGGAAAATCCGAGAACTGGTTGCTGTTCGAGAATGTTGATGGAGTTTCTATTCATGG TGGGGTGCTTGATGGCCAAGGCAAGCCCTTGTGGAATTGCAAGAACTCAGGCCATGGTAATTGCCCAACAGGAGCCACGG TACGTACGTTTCAGCACTTTTCATTTTACAATGCAGTTAAACAATAACGTTGTAGTTTATCTATAGAAATTTTAACATCT TGATGATTACACTGGTTTATCGTAGGATGGAATTGTTTAATCTACTACTCCTAATTTTCTCCTACCAGGCTTTAATTTTT TTAATTTAATTTTATGTGGGAGTTAACGCCAGGTGATTGATTAGGTAGTGTGTGTTTAGTGGGGAGGTTATGGAACGGTT TGCGACTGTTCAATTTGCTAGAAATTGTAGAAAATAATCAAAATATCAAGCGGGGAGTTAGTACTTAGTACGAACAAATA TTCCCTATATATACTAGGAAGAGATTCTCTCATTACCATGTCCAAATGGGGACAGAAGCTATATATATGGATCATATTAT ATTATCCTCTTATATATATATATATATTTTTTTTTGGACGTGCTTTTATATTTCAAATATAGACTTTCATCCAATCAAAC AATTAAAGTGATGGGGGATTTTCATTTGTGATGTGTTTCAGACATTGGAATTCAAAAACTCCAAAAACATTGTTGTTTCT GGGTTGACCTCAATCAATAGTCAACTATTCCACATACTATTTCGAGAATGCCAAAATGTGAAAATGCAAGGTGTGAAGAT CATGGCCCCTGGAAACAGTCCTAACACTGATGGTATTCATGTCCAAATGTCCTCCCACGTAACCATCACCAACTCCAAAA TTCAGACCGGAGATGATTGCATTTCAATAGGACCTGGCACCTCTAACTTGTGGATTGAAAACATTGCATGTGGACCAGGC CATGGAATAAGGTTTTTCTTTAAGAACGTTGTTTTTGTTCTACTTAATTTTGGTTATTCTTGTAATGACATTATAAAATA CTAATTGCATGTTTGTTGGATTTAATTTGCAGCATTGGAAGCTTAGGATGGGATTTGAACGAACCAGGTGTGCAAGATGT GACAGTTAAAACGGTTACATTCACAGGCACTCAGAATGGTGTTAGAATAAAATCTTGGGGGAGACCCACTAATGGGTTTG TGAGGAACGTGCTTTTCCAAGATTTAATAATGGTCAATGCCCAAAACCCCATTATAGTTGACCAAAATTACTGCCCCAAT AACAAGGGCTGCCCTCGTCAGGTAAATTTCAATTAAGACTAATGGCATCAAGAAAATAATCATGACGGCCTAAATATATA GTATTTTCCTTGACTAAGATATAAAAATAAAATTAAGAAAAATGGTTCAATTTTTTTTTTGAAAGAAAAAATGGTTCAAT TTTGATGCAATGTCAATCAGATTTTAAATGTGTCATCAATTAATAAAACTAAAAAAAAAGTCACTTTTTAAAAATCTGAT TAGTTTATTATGTAAAACATCATCACAAAAAATCGTTGCACACTTACACTACCGGTGCATGTAGTGCAATTCACTAAGAA AATATTGGGTTAGCATTGGAATGAAAATGAGTTGATTTTTTCTTTTTTTCTGATCAGGCCTCTGGAGTGAAAATCAGTGA TGTAACATACAAAGACATTCACGGAACATCAGCAACACCAGTTGCCATAAAATTTGATTGCAGTTCTAAGTATCCATGCA ATGGAATAAAGTTGCAGGAAGTGAAGCTCACATATAAGAGCCAAGATGCCCAAGCTTCGTGTAACCATGCAGGTGGAGCA ACTATGGGTACAGTTCAGCCAGAGAGTTGCTTGTAGAGATATGCAAATATATATATGCTATATATCAAGAGGAATATATA ATCATTCAAGAAATTTTTTATGAAGCGTAGATCTGTCTTAGTCCTAAGAGTCTTGGGCCGGTCACGATAATCATACATAC TGTATCAAAACTACTGTAATATGAGAAATAGTTTCTCTTCATTGCTTGATCATAGAAAGAATTGTAATGGACTATTGAAA GTCAATATTACTTGATTGTACTTCTTCAACTTAAAATATGTGTAATTTTTTAAAAAATTATATAGAAACATTATTACTGT CGGGTGGTATTCGATC
CDS sequence (LotjaGi4g1v0085800.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGCTAAACTCAATCTCAAAACTAAGTCCTCTTGCAAATACTCTTGTTTTTCTTGTGACCCTTTACTTAGCCACGGCCAA TGCAGCAGCAGCCTCCTATAATGTGGTCAGTTTCGGAGCCAAACCGGACGGCCGCACCGATTCCACAAAGGCCTTCCTAA GTGCATGGAACAGAGCTTGCACCTCGCGCAACCCCGCGGCAATTTATGTGCCGCAGGGGCGGTTCTTGCTTGGAAGTGCA ACCTTTCAAGGAAAATATTGTAAAGGTGTTTCAATTACTATTGATGGCACCTTGGTGGCTCCCTCGGATTACCGCGTGAT CGGAAAATCCGAGAACTGGTTGCTGTTCGAGAATGTTGATGGAGTTTCTATTCATGGTGGGGTGCTTGATGGCCAAGGCA AGCCCTTGTGGAATTGCAAGAACTCAGGCCATGGTAATTGCCCAACAGGAGCCACGACATTGGAATTCAAAAACTCCAAA AACATTGTTGTTTCTGGGTTGACCTCAATCAATAGTCAACTATTCCACATACTATTTCGAGAATGCCAAAATGTGAAAAT GCAAGGTGTGAAGATCATGGCCCCTGGAAACAGTCCTAACACTGATGGTATTCATGTCCAAATGTCCTCCCACGTAACCA TCACCAACTCCAAAATTCAGACCGGAGATGATTGCATTTCAATAGGACCTGGCACCTCTAACTTGTGGATTGAAAACATT GCATGTGGACCAGGCCATGGAATAAGCATTGGAAGCTTAGGATGGGATTTGAACGAACCAGGTGTGCAAGATGTGACAGT TAAAACGGTTACATTCACAGGCACTCAGAATGGTGTTAGAATAAAATCTTGGGGGAGACCCACTAATGGGTTTGTGAGGA ACGTGCTTTTCCAAGATTTAATAATGGTCAATGCCCAAAACCCCATTATAGTTGACCAAAATTACTGCCCCAATAACAAG GGCTGCCCTCGTCAGGCCTCTGGAGTGAAAATCAGTGATGTAACATACAAAGACATTCACGGAACATCAGCAACACCAGT TGCCATAAAATTTGATTGCAGTTCTAAGTATCCATGCAATGGAATAAAGTTGCAGGAAGTGAAGCTCACATATAAGAGCC AAGATGCCCAAGCTTCGTGTAACCATGCAGGTGGAGCAACTATGGGTACAGTTCAGCCAGAGAGTTGCTTGTAG
Protein sequence (LotjaGi4g1v0085800.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MLNSISKLSPLANTLVFLVTLYLATANAAAASYNVVSFGAKPDGRTDSTKAFLSAWNRACTSRNPAAIYVPQGRFLLGSA TFQGKYCKGVSITIDGTLVAPSDYRVIGKSENWLLFENVDGVSIHGGVLDGQGKPLWNCKNSGHGNCPTGATTLEFKNSK NIVVSGLTSINSQLFHILFRECQNVKMQGVKIMAPGNSPNTDGIHVQMSSHVTITNSKIQTGDDCISIGPGTSNLWIENI ACGPGHGISIGSLGWDLNEPGVQDVTVKTVTFTGTQNGVRIKSWGRPTNGFVRNVLFQDLIMVNAQNPIIVDQNYCPNNK GCPRQASGVKISDVTYKDIHGTSATPVAIKFDCSSKYPCNGIKLQEVKLTYKSQDAQASCNHAGGATMGTVQPESCL
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| SignalP_EUK | 1 | 30 | 30 | - | – | |
| SignalP_GRAM_POSITIVE | 1 | 28 | 28 | - | – | |
| Phobius | 1 | 30 | 30 | - | – | |
| Phobius | 1 | 13 | 13 | - | – | |
| SignalP_GRAM_NEGATIVE | 1 | 28 | 28 | - | – | |
| Phobius | 14 | 25 | 12 | - | – | |
| PANTHER | 16 | 397 | 382 | 6.0E-187 | – | |
| PANTHER | 16 | 397 | 382 | 6.0E-187 | – | |
| SUPERFAMILY | 17 | 397 | 381 | 3.61E-122 | ||
| Gene3D | 18 | 396 | 379 | 1.7E-121 | ||
| Phobius | 26 | 30 | 5 | - | – | |
| Phobius | 31 | 397 | 367 | - | – | |
| Pfam | 60 | 382 | 323 | 3.9E-90 | ||
| SMART | 182 | 208 | 27 | 690.0 | ||
| SMART | 209 | 230 | 22 | 15.0 | ||
| SMART | 232 | 252 | 21 | 2600.0 | ||
| ProSitePatterns | 239 | 252 | 14 | - | ||
| SMART | 262 | 283 | 22 | 22.0 | ||
| SMART | 292 | 313 | 22 | 7300.0 | ||
| SMART | 326 | 366 | 41 | 5200.0 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Polygalacturonase activity | Catalysis of the random hydrolysis of (1->4)-alpha-D-galactosiduronic linkages in pectate and other galacturonans. | ||
| Biological process | Carbohydrate metabolic process | The chemical reactions and pathways involving carbohydrates, any of a group of organic compounds based of the general formula Cx(H2O)y. Includes the formation of carbohydrate derivatives by the addition of a carbohydrate residue to another molecule. |
Expression pattern of LotjaGi4g1v0085800.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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