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| Field | Value |
|---|---|
| Gene ID | LotjaGi4g1v0088900 |
| Transcript ID | LotjaGi4g1v0088900.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Pentatricopeptide repeat-containing family protein; TAIR: AT2G03380.1 Pentatricopeptide repeat (PPR) superfamily protein; Swiss-Prot: sp|Q9ZQ74|PP146_ARATH Pentatricopeptide repeat-containing protein At2g03380, mitochondrial; TrEMBL-Plants: tr|G7JGB1|G7JGB1_MEDTR PPR containing plant-like protein; Found in the gene: LotjaGi4g1v0088900 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:11817956..11821764) extracted from Lotus japonicus Gifu genome v1.2.
TGACTTTTTAAAAAAATCATATTAATGTTTTAGTCTTTACCCATAACACCGAGGTTCTTTCAAATATCTTCTCTTGTATT CAACATGATGTATTGGCCTCGACAACCGTTTTTTCTTGATTTATTGAAGCATTTTTCAAAAAAAACCAACAAGATGAAAT TGAGGGGTCAATGGATTATTTTCCAACACCAGACCGATGAAAAAAATAAAAATTCCTATGTCATTTGAAGAGCACCATGG GCAGATTATGGTCACTAGTCAAATAACGTTTTCATCTTTGTATATTACGCTAAGTTTGAAAATGGTTCATTTCCGGAGCA AAATTTGAATTCAGTCCCTACTGTTTGAGAAACTACTTGGTTTTAGTCAGGTGGTGGTCCGGTGAGTCGGTGACTTTTGC CACTAACTCACTAGTTAATATAAACCCGACTAATCGGTGAATCTATGTCGTAAATTACAAGTAAGATTTATGAAGCCATG AGACAAATATCACCTGACCACCACCTCCAACAAAGACCAAAATCAGGTAATTTCTCAAATAGTAAAGACCGAGTTCAAAC TTAACTCACCTGAAACGTTATTTAACCCACCCTAAATCCATATATGCTTTGCTTTCTAATGTTTATGTAGGCTTATTACG TGTATACTTCAAAATCTTCAACTAGCTTCTACCATAGAAACATGTTGGTAGCACCATGTTCTCTGTTCCATTCCTCTAAA TCTCTTATTCAATTCAGGTCCCTCAGCAGCTACATTGCCTTTACACTTCCTCATCCTCCCACTCTCTACCTCTCTCCCAT CTGCAAAAACATCGACACCGTCAAAAAATTCCACGCCTCCCTCATCGTCCATGGCTTCCCCGGCGACACCAAGCTCCTCA GCCTCTACGCCTCCTTCGGCTTCCTCCGCCACGCGCGCCGCCTCTTCGACCACCTCCCCTCCCCAAACCTCCACTCCTTC AAAGCCATGCTCCGCTGGTACTTCCTCAACAACCTCCACTCCGACGTCGTTTCCTTCTACCACCTCACGCGTTACACTCT CGGTTTCTTCCACGACCTCGTCGTTTTCTCCATCGTCCTCAAGGCCTGCTCCGAGCTTCGCGACGTCGTTCAAGCCGCCA GGCTCCACTGCCATGTTATCAAGTCCGGCCCCTCCGACGGGTTTGTCCTCAACGGCCTTGTTGACGCTTACTCGAAATGC GGCCATGTTTGCAGTGCACGCAAAGTGTTCGATGAAATTGCTGAACGGAACGTTGTGTCGTGGACCTCCATGATCGTTGC GTACGTGCAAAATGATTGCGCGGTGGAAGGGTTGAGGTTGTTTAATAGAATGAGGGAAGGGTTTGTTGATGGGAATGACT TCACCGTTGGGAGCTTGGTCACCGCGTGCACGAAATTGGGGTCGTTGCATCAGGGGAAGTGGGTTCATGGCTATGTTGTT AAGAGTGGGATTCACGTGAATTCTTTCTTGGCAACTAGTCTGTTGAACATGTATGTAAAATGTGGGGACATTGGGGATGC TCGTAAAGTTTTCGATGAAATGTTGACAAGTGATGATGAGCTTGACCTTGTGTCGTGGACTGCTATGATAGTTGGGTACT CGCAGAGAGGACACCCTCTTAAAGCGCTGGAATTGTTCACTGATCGGAATTGGGCAGGGATTTTGCCTAATTCCGTTACC GTTGCGAGTTTGCTCTCTGCGTCTGCTCAACTAAGTAATGCTGTTATGGGAATGTTGCTTCATGGTCTTGTGGTGAAGTG TGGGTTGTTTGATAATACTCCTGTGAGGAATGCTCTTATTGATATGTATGCAAAGTGCCACCTCGTTTCAGATGCTCGTT ATGTGTTTGAAACGACGGTCCAAAAGGATGTTGTCTCTTGGAACTCGTTTATTTCTGGTTGTGCTCAGAGTGGCTCTGCT TATGAAGCTCTTGAGATGTTTCAAAGGATGAGATCAGAGTCATTTTCGCCACCAGATGCAGTTACCGTGGTTGGTGTTCT CTCGGCTTGTGCTTCCCTCGGAGCTCTTCCACTTGGTTCTTCCATTCATGCTTTTGCCTTGAAGGATGGCCTCGTGTCAT GTAGCATTTATGTTGGGACTGCGCTGCTCAACTTTTATGCAAAATGTGGGGATGCAAAATCCGCTCGTATGGTGTTTGAT GGGATGGGAGAGAAGAATGCCGTGACATGGAGTGCAATGATTGGTGGTTATGGAATGCAAGGTGATGGTGTTGGATCCAT TGCGCTGTTCAGGGATATGTTGAAGGAGGAATGTGAGCCTAATGAAGTGGTCTTCACTTCTGTATTAGCAGCCTGCAGCC ATTCAGGAATGGTTGGTGAAGGGTCCAGGTTATTTCATATGATGTGTCGGGAACTGAACTTTGTTCCTTCCATGAAGCAT TATGCGTGTATGGTTGATCTATTGGCACGTGCTGGCAACCTTAAAGAGGCATTGGACTTCATTGACAAAATGCCTGTTCA ACCTGGTGTTAGTGTTTTTGGTGCTTATTTGCATGGATGTGGACTTCATTCTGAGTTTGAATTGGGAGAAGTGGCAATTA GGAGAATGTTAGAGTTGCACCCTGATCAAGCTTGTTACTATGTGCTTGTGTCCAACCTTTATGCTTCAGATGGGAGATGG GGCATGGTTAAGCAGGTGAGGGAGATGATAAAGCAAAGGGGATTGAACAAGGTCCCTGGTTGTAGTCTAGTGGAGATAGA TCTCAATGATACATATTCCAAAGTGACAATTTTTCCTTAATCGTGTCAACTTTGTGCATGATTATATACTTCATAGTAGC AAAACTAATTGCTCAAACAAGTGGTTCAATCGATAACATTTGATGAGCACCACCAGCATACTCGAGCTGAAAAAGTTTAG AAAAACAATCTTGGAAGATTTGAGATAACCATTGGGGGGTTAGACTCAAGGAGAGGCATAAGCTAGTAGGTCTCTTTTGA GGTCAGTGACCAAAATGGTGAGCATGAAGCTGGGAAAATGGCCTTAAAAGGTTGAACAATGACATATACAATTAAAGTTA CTAACAAATCAAAAACTCTGTAATTTAATAAAGCTATTTGTTTATGTATATTATTATCTAACATCTATTGTTAACTTTGA CTAGATTCCTTGTTCTTAATCCAAAATTCCACCTAGTAAGGTTTGTCGACGCAACACTAGCAAGGAAAGGTTTGTCGACA TTTGTCGAAATTTGACGAAGAAAAGCCATGAAAAATACTAAGTTAAACTGGCAAGTTGAGTTAATCGTGAAATTCGACAA CCACAAACGCTTGGAGCAGTTACAAAGGAAGTGGGCAGTTAAGAGCACGTGCACTCACCCTCGATGCAAAGAAACGGTTA AGAGCGTGTGCCTTCACCCACGACGCAGGTCACCCACGATGCAGGCAAGCGGTTGAGATACATGCCCTTTCCCACGATGC AAGAAGCTTATGGAGCAAGTATGAGATCGTGGATCAGCAAGCCCACTAACCCATTCAGCAGGAAGAAAAACCGCCAAGGA CATGTGAAGCAATGGAGCACTATAAATAGGAGAACATCATTCAGAAAAAGGGTTCCCAACTCAACTCCAAAAAACTCACT AAAAAGCTCACATGTCCGCATCAAAGAGACTTCAAGAGCCTAACGTGATGATGAAGGAGTATGTTGCAGAACCATTTACA ATTCCTGCATTTAGTGTTTTCGAACTTGCTGTTTTATTCACTTCCCTGTCAATTTCTCATTTGATGTAATTTTCCTTTGT TTTTTGACTTACTTTTCTTGTACTTTGCACTTTGATTAATGAAATCCGG
CDS sequence (LotjaGi4g1v0088900.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGTTGGTAGCACCATGTTCTCTGTTCCATTCCTCTAAATCTCTTATTCAATTCAGGTCCCTCAGCAGCTACATTGCCTT TACACTTCCTCATCCTCCCACTCTCTACCTCTCTCCCATCTGCAAAAACATCGACACCGTCAAAAAATTCCACGCCTCCC TCATCGTCCATGGCTTCCCCGGCGACACCAAGCTCCTCAGCCTCTACGCCTCCTTCGGCTTCCTCCGCCACGCGCGCCGC CTCTTCGACCACCTCCCCTCCCCAAACCTCCACTCCTTCAAAGCCATGCTCCGCTGGTACTTCCTCAACAACCTCCACTC CGACGTCGTTTCCTTCTACCACCTCACGCGTTACACTCTCGGTTTCTTCCACGACCTCGTCGTTTTCTCCATCGTCCTCA AGGCCTGCTCCGAGCTTCGCGACGTCGTTCAAGCCGCCAGGCTCCACTGCCATGTTATCAAGTCCGGCCCCTCCGACGGG TTTGTCCTCAACGGCCTTGTTGACGCTTACTCGAAATGCGGCCATGTTTGCAGTGCACGCAAAGTGTTCGATGAAATTGC TGAACGGAACGTTGTGTCGTGGACCTCCATGATCGTTGCGTACGTGCAAAATGATTGCGCGGTGGAAGGGTTGAGGTTGT TTAATAGAATGAGGGAAGGGTTTGTTGATGGGAATGACTTCACCGTTGGGAGCTTGGTCACCGCGTGCACGAAATTGGGG TCGTTGCATCAGGGGAAGTGGGTTCATGGCTATGTTGTTAAGAGTGGGATTCACGTGAATTCTTTCTTGGCAACTAGTCT GTTGAACATGTATGTAAAATGTGGGGACATTGGGGATGCTCGTAAAGTTTTCGATGAAATGTTGACAAGTGATGATGAGC TTGACCTTGTGTCGTGGACTGCTATGATAGTTGGGTACTCGCAGAGAGGACACCCTCTTAAAGCGCTGGAATTGTTCACT GATCGGAATTGGGCAGGGATTTTGCCTAATTCCGTTACCGTTGCGAGTTTGCTCTCTGCGTCTGCTCAACTAAGTAATGC TGTTATGGGAATGTTGCTTCATGGTCTTGTGGTGAAGTGTGGGTTGTTTGATAATACTCCTGTGAGGAATGCTCTTATTG ATATGTATGCAAAGTGCCACCTCGTTTCAGATGCTCGTTATGTGTTTGAAACGACGGTCCAAAAGGATGTTGTCTCTTGG AACTCGTTTATTTCTGGTTGTGCTCAGAGTGGCTCTGCTTATGAAGCTCTTGAGATGTTTCAAAGGATGAGATCAGAGTC ATTTTCGCCACCAGATGCAGTTACCGTGGTTGGTGTTCTCTCGGCTTGTGCTTCCCTCGGAGCTCTTCCACTTGGTTCTT CCATTCATGCTTTTGCCTTGAAGGATGGCCTCGTGTCATGTAGCATTTATGTTGGGACTGCGCTGCTCAACTTTTATGCA AAATGTGGGGATGCAAAATCCGCTCGTATGGTGTTTGATGGGATGGGAGAGAAGAATGCCGTGACATGGAGTGCAATGAT TGGTGGTTATGGAATGCAAGGTGATGGTGTTGGATCCATTGCGCTGTTCAGGGATATGTTGAAGGAGGAATGTGAGCCTA ATGAAGTGGTCTTCACTTCTGTATTAGCAGCCTGCAGCCATTCAGGAATGGTTGGTGAAGGGTCCAGGTTATTTCATATG ATGTGTCGGGAACTGAACTTTGTTCCTTCCATGAAGCATTATGCGTGTATGGTTGATCTATTGGCACGTGCTGGCAACCT TAAAGAGGCATTGGACTTCATTGACAAAATGCCTGTTCAACCTGGTGTTAGTGTTTTTGGTGCTTATTTGCATGGATGTG GACTTCATTCTGAGTTTGAATTGGGAGAAGTGGCAATTAGGAGAATGTTAGAGTTGCACCCTGATCAAGCTTGTTACTAT GTGCTTGTGTCCAACCTTTATGCTTCAGATGGGAGATGGGGCATGGTTAAGCAGGTGAGGGAGATGATAAAGCAAAGGGG ATTGAACAAGGTCCCTGGTTGTAGTCTAGTGGAGATAGATCTCAATGATACATATTCCAAAGTGACAATTTTTCCTTAA
Protein sequence (LotjaGi4g1v0088900.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MLVAPCSLFHSSKSLIQFRSLSSYIAFTLPHPPTLYLSPICKNIDTVKKFHASLIVHGFPGDTKLLSLYASFGFLRHARR LFDHLPSPNLHSFKAMLRWYFLNNLHSDVVSFYHLTRYTLGFFHDLVVFSIVLKACSELRDVVQAARLHCHVIKSGPSDG FVLNGLVDAYSKCGHVCSARKVFDEIAERNVVSWTSMIVAYVQNDCAVEGLRLFNRMREGFVDGNDFTVGSLVTACTKLG SLHQGKWVHGYVVKSGIHVNSFLATSLLNMYVKCGDIGDARKVFDEMLTSDDELDLVSWTAMIVGYSQRGHPLKALELFT DRNWAGILPNSVTVASLLSASAQLSNAVMGMLLHGLVVKCGLFDNTPVRNALIDMYAKCHLVSDARYVFETTVQKDVVSW NSFISGCAQSGSAYEALEMFQRMRSESFSPPDAVTVVGVLSACASLGALPLGSSIHAFALKDGLVSCSIYVGTALLNFYA KCGDAKSARMVFDGMGEKNAVTWSAMIGGYGMQGDGVGSIALFRDMLKEECEPNEVVFTSVLAACSHSGMVGEGSRLFHM MCRELNFVPSMKHYACMVDLLARAGNLKEALDFIDKMPVQPGVSVFGAYLHGCGLHSEFELGEVAIRRMLELHPDQACYY VLVSNLYASDGRWGMVKQVREMIKQRGLNKVPGCSLVEIDLNDTYSKVTIFP
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Gene3D | 41 | 189 | 149 | 6.4E-16 | ||
| PANTHER | 123 | 246 | 124 | 2.1E-131 | – | |
| ProSiteProfiles | 125 | 155 | 31 | 6.39 | ||
| ProSiteProfiles | 159 | 193 | 35 | 9.186 | ||
| Pfam | 163 | 191 | 29 | 0.51 | ||
| Gene3D | 190 | 351 | 162 | 2.4E-30 | ||
| Pfam | 192 | 219 | 28 | 4.1E-5 | ||
| TIGRFAM | 192 | 219 | 28 | 0.001 | ||
| ProSiteProfiles | 225 | 259 | 35 | 7.114 | ||
| PANTHER | 242 | 343 | 102 | 2.1E-131 | – | |
| ProSiteProfiles | 260 | 294 | 35 | 9.306 | ||
| Pfam | 265 | 289 | 25 | 3.4E-4 | ||
| TIGRFAM | 265 | 290 | 26 | 1.4E-4 | ||
| ProSiteProfiles | 295 | 329 | 35 | 9.657 | ||
| Pfam | 297 | 319 | 23 | 3.5E-4 | ||
| Gene3D | 352 | 449 | 98 | 4.4E-18 | ||
| PANTHER | 352 | 452 | 101 | 2.1E-131 | – | |
| ProSiteProfiles | 365 | 395 | 31 | 6.412 | ||
| Pfam | 395 | 444 | 50 | 1.0E-7 | ||
| ProSiteProfiles | 396 | 430 | 35 | 12.529 | ||
| TIGRFAM | 398 | 430 | 33 | 3.2E-7 | ||
| ProSiteProfiles | 432 | 466 | 35 | 5.338 | ||
| Gene3D | 450 | 564 | 115 | 2.1E-21 | ||
| PANTHER | 452 | 664 | 213 | 2.1E-131 | – | |
| ProSiteProfiles | 468 | 498 | 31 | 6.829 | ||
| Pfam | 498 | 546 | 49 | 2.3E-8 | ||
| ProSiteProfiles | 499 | 533 | 35 | 10.446 | ||
| TIGRFAM | 501 | 535 | 35 | 1.0E-6 | ||
| ProSiteProfiles | 534 | 569 | 36 | 8.166 | ||
| TIGRFAM | 536 | 570 | 35 | 3.3E-4 | ||
| Gene3D | 565 | 679 | 115 | 2.6E-12 | ||
| ProSiteProfiles | 570 | 600 | 31 | 7.739 | ||
| Pfam | 574 | 597 | 24 | 0.018 | ||
| TIGRFAM | 574 | 598 | 25 | 0.0021 | ||
| ProSiteProfiles | 635 | 670 | 36 | 6.226 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of LotjaGi4g1v0088900.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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