Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message
| Field | Value |
|---|---|
| Gene ID | LotjaGi4g1v0089600 |
| Transcript ID | LotjaGi4g1v0089600.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Transmembrane emp24 domain-containing protein; TAIR: AT1G26690.1 emp24/gp25L/p24 family/GOLD family protein; Swiss-Prot: sp|Q9LQY3|P24D9_ARATH Transmembrane emp24 domain-containing protein p24delta9; TrEMBL-Plants: tr|I3RZJ8|I3RZJ8_LOTJA Uncharacterized protein; Found in the gene: LotjaGi4g1v0089600 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:11869050..11873000) extracted from Lotus japonicus Gifu genome v1.2.
AACTTTCATACGTGTATCTTCCAATGAAAGGCCACCACGTAAGAAAATAAGAATCAATTTTTTACAACCTCATTGTGATA TATAGTTAGCACCTTGTTTGGTTCAACACTTTTAAGGTTCAGCTTCCCATTATTTCTTTTTCTGCTTCTCGATCTGCATC TTCTTCTTCTTCTTCTTCTTCTTCTCTTCTCAACCTAATCATCAGTGCTCAACTCTTCTCTCTTTCTCTCTCATCATGAT TGGGCTTAACCAGAAACCCTTTTTGCATCTTTGTCTTGTACTTCTTGTGCTGTTTTCTTCTTCTTCTTCCACTGAATCCC TCAGATTTGAGCTCCAATCTGGCCACACCAAATGCATCTCCGAAGACATCAAGAGCAATTCCATGACAGTCGGCAAGTAC TCCATCATCAACCCCAACGAGGGTTTCCCTTTACCCGATACCCACAGAGTCACAGTTAGGGTATGAAAAAAAAAATGAAA AAAAATCCAAACTTTTTCTTGCCCAGTATTGAATCTCTGTGATTTGAATCAAGTTCAGTGGTTTTTCGTTAATGGGTAAT CGTAGTTTTTTTTTTTTTTTTTGCAGGTGACTTCGTCTTATGGGAACAACTATCACTATGGGGATCGTGTTGAATCGGGT CAATTTGCATTTGTAGCTGCTGAGGCTGGAGACTACATGAGTTGTTTCTGGGCTGCGGATCACACACCGGCGATAACGTT GACTATAGATTTCGAATGGAAGACGGGTGTGGCGGCTAAGGATTGGTCTAATGTTGCTAAGAAAGGCCAAGTTGATGTGA GTTCATTACTTGTTTCTGGCTTATTTTAGTAAGAGTATGAACAAACAACTAATCATGAAGTCAAGCATTCAAAAATAGTA ATTGAAAAACACAACAAAGTCCTCACTTAATTGTTTTAAGAGTTTTCATTAGTTGTGTCTATTAACATTGTAGTGTTGTA GTGTTGCAGTGTTTTGATTATTGCCCTCTGTAGTTGTACTACTAAGTTTCATTTAGCTTGCTGCTGAATATTTACTTAGT TACATTCCAAGGAATACTTTTCTAAGGAAAGCTGATTTGAACTGAACTCAGTATTGCTTTGTAGTATTTGTGGCTATGTA CTTATTTCGTTGAGGCTAGGATATCTTACGGTCTGCTTTCCTTGATCTGGTTCTTGATGATATATTAGGAGTAGGGTTGG TAATAGCGCACCATAGCGGCGCAATAGCGCTATAGCGGAGCACTCTAGAGTTCACCGCTATTTGCCGCTATTGTCTGCTA TTTGCCTCTATCGCACTCGAAATAGCATTTTTTGGGCTTGCCGCTACACTGCGCTATCCGCCATTAACAACCCTGATTAG GAGTATGTTCGGAGTTAGCATGTGTGCTTGTATTGGAGCTGGGTTGGATGTGCAAGTCCTTTCATCCAATCCAACTCTTC TGTTCCTTTGTACCGCCTACGTTCCTTATTAACTGTCCACTTTCAAGAAAAAAATTTGTTCCTATATATTTGTCCACTTA GCATTTCAAGAGAGCATTAAATGATGTTTTTCCTAACAATGCCCTTGTAAAAGCAATAAATGAAGAAAGATAAAACACAT TCTACGGGGTAAAATAGGAAAACAACTAATGCTTTTCTGAAAATCAACAAAATTAATTCCACTCCTTAATATGTGTGTTT CTTCTCTCTCTGAACAGTTAAATAGGAATGTGTGCTACATGGGTTGAAAAACACACACATTCCAAAGGTTGCTCAAAATA AAAATAGGTTATGCAAAGGACTAAAACTATTGGAAACAAATTTAGCATAGTGAGTAATGTAAGAAATATCAAGCCTTGCA TCTATGTTAGGATATCAAGAAATAGATGATTTTGGGATACCGAGCTTTGGGATGGTTTTGAGTAACACAATCACCACGCT AAATAGATGGTTCCTTTTTTGCATTGGAATATGTGCTAATGGAAAAAAATAGTTTTGGGATATCAAGCTTTGCATCTAAT TTAGTGTAGTGTTTGTGTTACTAAACACAGGAAAAGAAATATGGTTGGTCTCTTTTGCAGCCCATCTCCTAGCTTATTTA CCTTACACTGAGGTGAGGTGAATTCCTCCTTATGAGCTTTCCTGGCTTAAGCACAATCTGATTTTTCAAGTAGTGTCTGA TATCAGTAATGGGTTAGACAGGTATATAGATTTGTATCCTTATTAGTAAATATCTAATCTTGGTAAGCTTATAGAGGGAG TTTTATATTTCTAATCATGGAAAGTTTCTTACTGCATGATGTTATATTAAATGGTTAGCCCATGTCATCCTTGCAAATCT CGTTGGTATGTTAACTCATTTTCCCTGTACTTATATGTTGTCAACTTATGTTTGCAAACTTTTGATATCAATAAGCGGTG TTTATTTCTTTTGTTGGCCCATTTTTCTCTTGACAAAATTGGCTTTCTTGAATGATTGCTAACTCCAAATATTTATGTAT TGCTTCACCTTTTATATATCTTTTCTTTGGATGTTTCCCTAATTCCGTGGATACCACTAGATTTATGCCCTATTCACAAG CAAATCTGAACCTACCCTCTGATCAAACTGAGGAGAAAAATTGAGATTGTGGATTCTTCTTTCTGATAAAACAAACGAAG GTGACACTGTTAACTGATAACTAGCTGAAACTAACAGAGAGTAGCAGTTATAACTTACAACTATATAATTAACATCTCTT TGTCACTAACTGGCTTCTATAATATCATATTCAATCTAGTGTCTGAGATACTTGAACCCTTCCTGTCCGCCCATTTGTCA TGGAGGCATGAACCATATCAAATCTTTGATTTTTCATTTACTTTGCAAGATTTGTAATCTTGCTGACTGGGTCTTAATGA AAGAGAAATTCACACCCTGATTTCATTCAATGTGCCAGGTAATGGAGCTAGAGCTAAAGAAGTTGCAAGATACTGTTTCT TCCATCCATGAGGAAATGTTTTATCTTCGTGAAAGGTAAGCATGGGCAATTGCCTCGAAGTTTCTTAATTCAATACACAA GCATTGTTCTTACTTTTGCTTATATACAAATTTCAATTCATTGACATAGGATATCTTTAACGAACATTAATTTTTATTTC TCAATTTCTAGAGAGGAAGAAATGCAGGATCTCAACAGAGCAACTAACTCCAGAATGTTCTGGTTGAGTTTGGTTTCGCT CTTTGTTTGCTTATCAGTAGCAGGGGCTCAACTATGGCACTTAAAGTCCTTCTTCGAGAAAAAGAAACTCATTTAAATTT TTTGTGATAGTTTTTACATTTTTCTTATGTGCTCTTGTAAAATATAGACATTAATTTATCCTGAAGATACGCATAATGGT AGCCACTATATCTCAGAATATTGCCTTTGTGAGGCCGAAATGAATTTCAAAGAAATGTTGACCTTCTGCAATCTGGGGAT TTTTTTATTGCATTTTTTAACTATGTTTTTAAAAAGCAATTAAGCTTGTAACATCTTGCGGATGATCATATGTGCTGAAA TTGCAACTCAGCGAAACATTTATATTCATTACCACCTCATATCTTATTGGGTATAGTTTCATTATCACTCCATGGAGTGA GGGGAGAAGAGAGCTAGGATGAAAACAGAGAGAAAAGAGAGAAAGTAAGAGATGCGGTGAGTAATATAATTGAAAGAGAA GAAGATAGAAGGTGAAGGTCCGAAATGAAGTGGAAAATTATATCAATGAATTATAGCTTGATCGATCTAATTAGCGGGTC AATATGGGACCAAGATCCCCTCAGATGTGATTTTTTTTTTATCATGTTAAGTTCTACCATCTCACCATTGATTCTTGTAT GTTATGTTTAATAATTATAGACATAAAATAATTAAATCAATAATTATAGAAATAAAAGAAAATTAAATCAAAGGTGAGAT AATGAAATTTGACATGGTCAAGTTTTTTACA
CDS sequence (LotjaGi4g1v0089600.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGATTGGGCTTAACCAGAAACCCTTTTTGCATCTTTGTCTTGTACTTCTTGTGCTGTTTTCTTCTTCTTCTTCCACTGA ATCCCTCAGATTTGAGCTCCAATCTGGCCACACCAAATGCATCTCCGAAGACATCAAGAGCAATTCCATGACAGTCGGCA AGTACTCCATCATCAACCCCAACGAGGGTTTCCCTTTACCCGATACCCACAGAGTCACAGTTAGGGTGACTTCGTCTTAT GGGAACAACTATCACTATGGGGATCGTGTTGAATCGGGTCAATTTGCATTTGTAGCTGCTGAGGCTGGAGACTACATGAG TTGTTTCTGGGCTGCGGATCACACACCGGCGATAACGTTGACTATAGATTTCGAATGGAAGACGGGTGTGGCGGCTAAGG ATTGGTCTAATGTTGCTAAGAAAGGCCAAGTTGATGTAATGGAGCTAGAGCTAAAGAAGTTGCAAGATACTGTTTCTTCC ATCCATGAGGAAATGTTTTATCTTCGTGAAAGAGAGGAAGAAATGCAGGATCTCAACAGAGCAACTAACTCCAGAATGTT CTGGTTGAGTTTGGTTTCGCTCTTTGTTTGCTTATCAGTAGCAGGGGCTCAACTATGGCACTTAAAGTCCTTCTTCGAGA AAAAGAAACTCATTTAA
Protein sequence (LotjaGi4g1v0089600.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MIGLNQKPFLHLCLVLLVLFSSSSSTESLRFELQSGHTKCISEDIKSNSMTVGKYSIINPNEGFPLPDTHRVTVRVTSSY GNNYHYGDRVESGQFAFVAAEAGDYMSCFWAADHTPAITLTIDFEWKTGVAAKDWSNVAKKGQVDVMELELKKLQDTVSS IHEEMFYLREREEEMQDLNRATNSRMFWLSLVSLFVCLSVAGAQLWHLKSFFEKKKLI
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| SignalP_EUK | 1 | 25 | 25 | - | – | |
| Phobius | 1 | 28 | 28 | - | – | |
| SignalP_GRAM_NEGATIVE | 1 | 27 | 27 | - | – | |
| Phobius | 1 | 8 | 8 | - | – | |
| Phobius | 9 | 20 | 12 | - | – | |
| PANTHER | 12 | 218 | 207 | 1.1E-113 | ||
| PANTHER | 12 | 218 | 207 | 1.1E-113 | – | |
| Phobius | 21 | 28 | 8 | - | – | |
| Pfam | 28 | 213 | 186 | 4.5E-51 | ||
| SMART | 28 | 213 | 186 | 4.8E-59 | ||
| Phobius | 29 | 185 | 157 | - | – | |
| ProSiteProfiles | 38 | 153 | 116 | 12.114 | ||
| Coils | 144 | 164 | 21 | - | – | |
| Phobius | 186 | 208 | 23 | - | – | |
| TMHMM | 186 | 208 | 23 | - | – | |
| Phobius | 209 | 218 | 10 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi4g1v0089600.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
Loading expression data from ljgea-geneid. Please wait…