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| Field | Value |
|---|---|
| Gene ID | LotjaGi4g1v0095500 |
| Transcript ID | LotjaGi4g1v0095500.2 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Formin-like protein; TAIR: AT5G67470.1 formin homolog 6; Swiss-Prot: sp|Q9FJX6|FH6_ARATH Formin-like protein 6; TrEMBL-Plants: tr|A0A151RXT6|A0A151RXT6_CAJCA Formin-like protein; Found in the gene: LotjaGi4g1v0095500 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:12750824..12752058) extracted from Lotus japonicus Gifu genome v1.2.
TGTTTCTCTGATACATATGCTGTTTGTTTTTACCTTGAACTACTTACTAGTTTGTAACCACCGTTTTCACTTTGCAAACA TCATTTATTAGCTTTTTGGATGACACAGGAAATCCTGAAGGGTTGGGTGCTGAGCTATTGGAAACACTAGTGAAGATGGC TCCAACAAAGGAGGAAGAGATAAAACTAAAAAATTACGACGGCGACCTTTCAAAACTTGGGTCTGCGGAAAGATTTCTTA AAGCAGTGCTTGATATCCCTCTAGCTTTTAAAAGAGTTGAAGCCATGCTGTACAGAGCTAATTTTGAAACAGAAGTTAAC TACCTTAGGAAATCCTTTCAGACCTTGGAGGTGAGACTAGCTTTTATCAATCCATTGTTTTCTTTGATGTTTACATTTTC TCCTGCCTCTTACTAACCAATCAGGTTTAATATCTATCAGGCAGCAAGTGAGGAATTGAAAAACAGCCGGTTATTCTTCA AACTTCTTGAAGCTGTTCTCAGGACAGGAAACAGAATGAATGTTGGCACCAATCGCGGTGATGCTAAGTCTTTCAAACTA GACACACTCCTAAAACTAGTAGATATAAAGGGAACAGATGGAAAGACCACATTGCTACACTTTGTGGTCCAAGAGATCAT TAGATCTGAAGGTACAGGTGGTGAATCTGCAAATGAGAGTGTTCAAAACCAAACGAATTCCCAATTCAATGAGGATGAGT TCAGAAAGAAAGGACTGCAGGTTGTGGCTGGACTGAGTAGAGACCTTGGTAATGTCAAAAAGGCAGCAGGAATGGACTCT GATGTCTTAAGCAGCTATGTATCAAAGCTTGAAATGGGGCTGGATAAAGTGAGATTGGTTTTGCAGTATCAAAAGCCAGA TATGCAAGGAAGCTTCTTTAACGCGACAGAGATATTTCTGAAAGATGCTGAGGAGAAAATTATTGTGATCAAGGATGATG AGAGAAGGGCTTTGTTCCTTGTGAAAGAAGTTACAGAATACTTTCACGGGGATACGGCAAAAGAAGAAGCGCACCCTTTC AGAATTTTCATGATTGTAAGAGACTTTCTAAATATTCTTGATCAAGTATGCAAAGAAGTGGGAAGGATGCAGGATAGGAC TGTGATCGGTTCAGCCAGATCATTCAGGATAGCTGCAAATGCATCATTACCGGTTCTCAACAGGTACCACGCAAGACAGG ATAGAAGTTCAGATGAGGAAAGCTTATCTCCCTAG
CDS sequence (LotjaGi4g1v0095500.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCTCCAACAAAGGAGGAAGAGATAAAACTAAAAAATTACGACGGCGACCTTTCAAAACTTGGGTCTGCGGAAAGATT TCTTAAAGCAGTGCTTGATATCCCTCTAGCTTTTAAAAGAGTTGAAGCCATGCTGTACAGAGCTAATTTTGAAACAGAAG TTAACTACCTTAGGAAATCCTTTCAGACCTTGGAGGCAGCAAGTGAGGAATTGAAAAACAGCCGGTTATTCTTCAAACTT CTTGAAGCTGTTCTCAGGACAGGAAACAGAATGAATGTTGGCACCAATCGCGGTGATGCTAAGTCTTTCAAACTAGACAC ACTCCTAAAACTAGTAGATATAAAGGGAACAGATGGAAAGACCACATTGCTACACTTTGTGGTCCAAGAGATCATTAGAT CTGAAGGTACAGGTGGTGAATCTGCAAATGAGAGTGTTCAAAACCAAACGAATTCCCAATTCAATGAGGATGAGTTCAGA AAGAAAGGACTGCAGGTTGTGGCTGGACTGAGTAGAGACCTTGGTAATGTCAAAAAGGCAGCAGGAATGGACTCTGATGT CTTAAGCAGCTATGTATCAAAGCTTGAAATGGGGCTGGATAAAGTGAGATTGGTTTTGCAGTATCAAAAGCCAGATATGC AAGGAAGCTTCTTTAACGCGACAGAGATATTTCTGAAAGATGCTGAGGAGAAAATTATTGTGATCAAGGATGATGAGAGA AGGGCTTTGTTCCTTGTGAAAGAAGTTACAGAATACTTTCACGGGGATACGGCAAAAGAAGAAGCGCACCCTTTCAGAAT TTTCATGATTGTAAGAGACTTTCTAAATATTCTTGATCAAGTATGCAAAGAAGTGGGAAGGATGCAGGATAGGACTGTGA TCGGTTCAGCCAGATCATTCAGGATAGCTGCAAATGCATCATTACCGGTTCTCAACAGGTACCACGCAAGACAGGATAGA AGTTCAGATGAGGAAAGCTTATCTCCCTAG
Protein sequence (LotjaGi4g1v0095500.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MAPTKEEEIKLKNYDGDLSKLGSAERFLKAVLDIPLAFKRVEAMLYRANFETEVNYLRKSFQTLEAASEELKNSRLFFKL LEAVLRTGNRMNVGTNRGDAKSFKLDTLLKLVDIKGTDGKTTLLHFVVQEIIRSEGTGGESANESVQNQTNSQFNEDEFR KKGLQVVAGLSRDLGNVKKAAGMDSDVLSSYVSKLEMGLDKVRLVLQYQKPDMQGSFFNATEIFLKDAEEKIIVIKDDER RALFLVKEVTEYFHGDTAKEEAHPFRIFMIVRDFLNILDQVCKEVGRMQDRTVIGSARSFRIAANASLPVLNRYHARQDR SSDEESLSP
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 327 | 327 | 8.8E-203 | – | |
| SUPERFAMILY | 1 | 292 | 292 | 3.92E-72 | – | |
| PANTHER | 1 | 327 | 327 | 8.8E-203 | – | |
| SMART | 1 | 293 | 293 | 1.2E-35 | ||
| Pfam | 1 | 278 | 278 | 3.1E-81 | ||
| ProSiteProfiles | 1 | 304 | 304 | 39.199 | ||
| Gene3D | 1 | 293 | 293 | 2.7E-68 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi4g1v0095500.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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