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LotjaGi4g1v0097300.2

Overview

Field Value
Gene ID LotjaGi4g1v0097300
Transcript ID LotjaGi4g1v0097300.2
Related isoforms 1
Lotus japonicus genome version Gifu v1.2
Description Protein kinase; TAIR: AT3G50000.1 casein kinase II, alpha chain 2; Swiss-Prot: sp|Q08466|CSK22_ARATH Casein kinase II subunit alpha-2; TrEMBL-Plants: tr|A0A0D2RBR0|A0A0D2RBR0_GOSRA Uncharacterized protein; Found in the gene: LotjaGi4g1v0097300
Working Lj name n.a.

Sequence information

Genomic sequence (LjG1.1_chr4:13158501..13162044) extracted from Lotus japonicus Gifu genome v1.2.

ATGTCGAAGGCGCGTGTCTACACCGATGTCAACGTTCTTCGCCCCAAGGAGTACTGGGACTACGAGTCTCTCGCCATTCA ATGGGGGTAATCATCAATCATATGCCGAGTTTTAGGGTTTCTGTGTTGTGTTATCATATGTGATTTGAACCAGTGTTGTC AAATAGCGGTTATAGCCGCGCCATAGCGCTATATTTTCCGCTTTAAGAGGCTGGAAATAGCGGATTTTTGGCTTACCGCT ATAGTCCGCGATCCGCGATTAACAACACTGATTTGTGTTGACCAAAATTAAAATGTTACTAATTGCTGGTGTTTTTTTGT TTTCTCTGGATTCCTGATTAATGTTATGTATGGAGTTTACTTTTCAGTGAACAAGATAATTATGAGGTTGTGAGGAAAGT GGGAAGGGGGAAGTACAGTGAGGTTTTCGAAGGCGTAAATGTTAATACCAATGAGCCCTGTGTAATGAAGATTCTCAAGC CTGTGAAGAAAAAGAAGGTCAGCTTTTGTTTATGATACTAATGTTGTATGCTAGCTTTCCTTTGGGATGTAAGGATTATG AATAAAGCCAGCCATTGGTGCTTTTTCCTGAACTATTCTCCTAAAATTTGCTGTACAATGAGTAATGCTGTAATTTATAC ACACAAAAAAGAATTTCTCATATACTCTTTACAATCTTCTTTGTATTGGATTACAACTCTAGCACTTTGCGGAATCTCCC TAACACAGTTTACAACAGTTGTTTCGGATATAAACAAGTAACTTGAGTTTATCATAAGGAGACATAATATAATAGAATTT CAAACATGGAGATTTATAGAATATCAATATTAGGCAAAAAACTTCTATCGAATAATAAACAACAGGCATATCAATATTGA AATCGTAGTTCATAATCTAATTTTATAGCATGGTTGTGATACCACCATCTGAGATCTTTAACATTATTTTGCAGATTAAA AGAGAGATAAAAATACTTCAGAACCTCTGTGGAGGACCAAATATTGTCAAGCTTCTTGATATTGTCAGAGATCAACACTC TAAAACTCCAAGCTTAATATTTGAGCATGTCAACAGTACAGATTTTAAAGTTCTGTATCCGACTTTGGCTGATTGTGACA TACGCTATTACATATATCAGCTTCTGAAGGTAATGTAATTCTTCGCTCTCGTGTTACTCTTGGGATGCTGCTCTTCGTGT CCTCTCCATTATAAATATATTATTTGGTAAAACTAAAAGTAATTGAAATATTGAATCTTGGGTAAGGCTTATATTAATTA TGCATCTAATTTACGTGTGTAAGCTTTTGCTTATGCATCAATGCATCATGAAATTATTCTTCATGTGTGCAAGAGATGTT TAGAACCTTTTCGTGTTACATGAATGCTTTTTAGTTTTGAATCGTAGGCTTTAGATTACTGCCATTCTCAAGGCATAATG CACAGAGATGTCAAGCCTCATAATGTAATGATCGATCATGAATTTCATAAACTTCGCTTGATAGATTGGGGTCTTGCTGA ATTTTATCATCCTGGAAAGGAATATAATGTTCGTGTGGCTTCAAGGTAATGTTCTCAGACCAATTTTTAAAAGTCCAGAA AGATATGTAAAATGGATGAACCAGAGTATATTACTATATTGCTAAAATCAAAATCAGTAAGGCATCATTAGCATGTTCAA GCATGATTTTTTCAAAGACTAGATTATTGAAAACTTTGTGTGCCAAGTATCGATATATCCATAAATGTCATTCTGAAGAT TTCGAGACAACCAACAGTGAGAAAGACTTGCAAAAAGATTTCTACTTTGGTCAAGGGAGATGTGGCCTTCATTGCTACTA AACATAGTGGAACTGAATACTTGCAAAAAGATTGTAGCAAATACTTACACTTCTACCAATTTATGCTTGATAAATATTTC ATACAAATTCCAAAATAGAGTTTGAATAAATCACCCTTTTTAATTATATCAAGATTCTCAATCCCTTAAGACCTTTTGAT TCTAGTTTCTTGTGAAGGTCTCTCCTATGTTCACTGTGCTATTATATTTTCAGCTACATTTTTTGTTTAATCTTAAGAGA CTCGTATTTTATAAACAACAATTAGACTTTTATTTCTGAAGCTTATAATACACAATATGCCCTAAATCGTGCTTTACAGA ATACTTGTATAAGATTAATGTGTAATGTATTGTGAAATGCCACTCATGGGGGTGTTTAGGCTTATTTTTCGCTGACAGTC TGACACTGATGCCATCTGACATTTATGATAGCCGGATGAAGCAGATCAATGAAAAGTATGTCAAAAGTGACCAAATGATT ATGTGACCCTGATTTCTTTATTTAATTACCCTTCCCAGTTCCCACTTAGCAATTTGAAAGGATATGAGTCTATTAGGCCT AGCTGAAGATATTAAGAGTGTTTAGAACTTAGAAGTCCCACATTGACTAGAGATATGGCCAAACAAGTGTTTATAAAGGG TAAAGCAACCCTAACCACTAAGCTAGCTGTTGGGGTATAGTTAAGCCTAACTTGAATTCTAAGAAAGAGCACAAAGATTA GTCTTCATTGCCATGTGCAAGTGCTGTAAGCAGAAGGAATAAGCAAGAAGATAAAGGAGTTCCAAGAATTGAGGTTTTTG TTCTAGTTTAGTGGTATTCTGCTTTATAGTTTCCAACTAGGCTCCTAGTTTTGGTTCTTGTTAGTAGCATGTTTCAGGTT CCTAGTCTAACACTTATCTTTAATCATATAAGCATTCTTAGCTTCTTTCCAGGCCATTGTTAATTTACTGTTGACATTTT TTTATTTTGTTTGTAATTTGCTGATATTTGTTAGTTTGGTATAAACTTGACTACATGACTACGGTTGTTTAAATTTTCCT AGACTTATATGCTATTGTTGTGTGAGGATTAGTTTTGGGTTTTCAAGTTATTGAATGACACTGACAATATATTTGATGTG CTATGCTTTCTTTCTCAGACACTTTAAGGGCCCTGAACTTCTAGTAGATTTGCAAGACTATGACTACTCATTAGACATGT GGAGCCTGGGTTGCATGTTTGCTGGAATGGTAAGATTTACAGCTACAGGTTACAATTTACTGGTTATGTGGTATTCCCTT TGGCATTTTTATGTGAAATCTAATTTTGAATATACATGTGCAAAATCATGTAACTCTGGTTTATGATAATTTTACTTCAT GTAGATATTTCGCAAGGAACCTTTCTTTTGTGGTCAGGACAACAACGATCAGCTTGTAAAAATAGCTAAGGTAACAATCA TGGCGGTTTGCAACAATGTATAAAATTTTCGAAGTTATCATGTTGATGCCATGCAAGTTAACGCAATGTTTTAGTTTTGA CTGCATAGTTTGAAAACACTGGTGGCATTTTTTGTAATTATTAGTAATATATTAAGACTGAGCTAGAGGGCAATGCCATG TCACTTCAGCTATATGTTTGCCACATAATTGTTTTAGCTAGCTCACAAATAATCTAATGTTCAAACTACATAAATCCTAA CATATCTCCTCGATGCAATTGCAT
Download Genomic Sequence

CDS sequence (LotjaGi4g1v0097300.2) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGTCGAAGGCGCGTGTCTACACCGATGTCAACGTTCTTCGCCCCAAGGAGTACTGGGACTACGAGTCTCTCGCCATTCA ATGGGGTGAACAAGATAATTATGAGGTTGTGAGGAAAGTGGGAAGGGGGAAGTACAGTGAGGTTTTCGAAGGCGTAAATG TTAATACCAATGAGCCCTGTGTAATGAAGATTCTCAAGCCTGTGAAGAAAAAGAAGATTAAAAGAGAGATAAAAATACTT CAGAACCTCTGTGGAGGACCAAATATTGTCAAGCTTCTTGATATTGTCAGAGATCAACACTCTAAAACTCCAAGCTTAAT ATTTGAGCATGTCAACAGTACAGATTTTAAAGTTCTGTATCCGACTTTGGCTGATTGTGACATACGCTATTACATATATC AGCTTCTGAAGGCTTTAGATTACTGCCATTCTCAAGGCATAATGCACAGAGATGTCAAGCCTCATAATGTAATGATCGAT CATGAATTTCATAAACTTCGCTTGATAGATTGGGGTCTTGCTGAATTTTATCATCCTGGAAAGGAATATAATGTTCGTGT GGCTTCAAGACACTTTAAGGGCCCTGAACTTCTAGTAGATTTGCAAGACTATGACTACTCATTAGACATGTGGAGCCTGG GTTGCATGTTTGCTGGAATGATATTTCGCAAGGAACCTTTCTTTTGTGGTCAGGACAACAACGATCAGCTTGTAAAAATA GCTAAGTTAACGCAATGTTTTAGTTTTGACTGCATAGTTTGA
Download CDS Sequence

Protein sequence (LotjaGi4g1v0097300.2) extracted from Lotus japonicus Gifu v1.2 Proteins.

MSKARVYTDVNVLRPKEYWDYESLAIQWGEQDNYEVVRKVGRGKYSEVFEGVNVNTNEPCVMKILKPVKKKKIKREIKIL QNLCGGPNIVKLLDIVRDQHSKTPSLIFEHVNSTDFKVLYPTLADCDIRYYIYQLLKALDYCHSQGIMHRDVKPHNVMID HEFHKLRLIDWGLAEFYHPGKEYNVRVASRHFKGPELLVDLQDYDYSLDMWSLGCMFAGMIFRKEPFFCGQDNNDQLVKI AKLTQCFSFDCIV
Download Protein Sequence

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PANTHER
PTHR24054
1 243 243 1.0E-166 –
PANTHER
PTHR24054:SF40
1 243 243 1.0E-166 –
SUPERFAMILY
SSF56112
9 243 235 7.69E-64
IPR011009
CDD
cd14132
15 243 229 1.99235E-160 –
Gene3D
G3DSA:3.30.200.20
34 110 77 2.1E-83 –
SMART
SM00220
34 252 219 5.4E-45
IPR000719
Pfam
PF00069
34 245 212 6.8E-55
IPR000719
ProSiteProfiles
PS50011
34 253 220 36.767
IPR000719
ProSitePatterns
PS00107
40 63 24 -
IPR017441
Gene3D
G3DSA:1.10.510.10
111 245 135 2.1E-83 –
ProSitePatterns
PS00108
147 159 13 -
IPR008271

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0004672
Molecular function Protein kinase activity Catalysis of the phosphorylation of an amino acid residue in a protein, usually according to the reaction: a protein + ATP = a phosphoprotein + ADP.
Subterm of
GO:0005524
Molecular function ATP binding Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator.
Subterm of
GO:0006468
Biological process Protein phosphorylation The process of introducing a phosphate group on to a protein.
Subterm of

Genome browser

Expression data

Expression pattern

Expression pattern of LotjaGi4g1v0097300.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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