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| Field | Value |
|---|---|
| Gene ID | LotjaGi4g1v0099100 |
| Transcript ID | LotjaGi4g1v0099100.3 |
| Related isoforms 2 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Geranylgeranyl diphosphate synthase; TAIR: AT2G34630.2 geranyl diphosphate synthase 1; Swiss-Prot: sp|Q5HZ00|SPS3_ARATH Solanesyl diphosphate synthase 3, chloroplastic/mitochondrial; TrEMBL-Plants: tr|I1MVR8|I1MVR8_SOYBN Uncharacterized protein; Found in the gene: LotjaGi4g1v0099100 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:13455398..13459865) extracted from Lotus japonicus Gifu genome v1.2.
ACGCTACACAGCAATCAGGAGCAGAAAAGGGCCGCTATGGTGCTATAGCGCGCTGTTGGCAACCCTGTCAGGAACAACTT GAAATGCTTGTTTTTTACAACGACAGATATATTTGATAAAATATCAATAATTGAATCAGAAGGTTCACATTTGCATGGTT CAATTATTTATTCATACCTACTTCACTATGATACATGTATTGTTCTCAGGATGAACATGATCCATTTTCACTGGTTGCTG ATGAGTTATCAATTCTTGGTAACAAGCTGCGAGAAATGGTAGTTGCTGAGGTATCAGACTGTTCTTCGTTTACTTTCTAA TGTATGCATGGAGCCAATTTTCTAATAAGAGCTCTGATTCATTTGCTGCATAGAAATCAGGTACTCATTGTGAAAATTGG GTATATGTGACAGGTTCCTAAGCTTGCCTCAGCTGCTGAATACTTCTTCAAAATGGGGGTAGAAGGAAAAAGATTTCGTC CTACAGTAAGCACATTCACAATTATATGCAGACAACTTTTATGCTTTGCAAGAAATGTTTGCTCTAGTCTGGTTTGACAT TTGCATATTCATCATTATAGGATGAACTAAACTACTATTAAATGTATGCTTGGAATGTTGTAAATTTATTCACCATCACA TCCCTTTCAAGTTGCCCTTAAGGATTTTACAAGTAGGTTAATGCATTTCAAGCTTCCAACACATAGCCTCTGCTCTCTTT CACATGCTCAGGTTTACACAATTGACAATTCTCTAAAATATGATTATTGACACATATCGTTAGGTTGGCACAAACAAAGG GATACTAGTAACTTGGAATGGACAAGGATGCTTTTAACAATAGCTACAAAGCTAACTTTTCTTTTTTGTTATGGTACTTC TGCCATCATGATGCCTTCCTTCCATTTTTAATTTTTCACTTTGTAATGCTATTTATCTCTGGTAGCTTAACTGTTTCTCC ATCTATCTACCTATGAGTGTGCGTAAAGAACTAAAGATATAATGTAATAGAATATATATTTTTTGAGTTTACTCATGTAA TATTGATGATTTGTATAGCTTTATTATTTCACACAGGATTTGGGTCATTGGATGGATGTTTTTGCAGGTTTTATTGTTAA TGTCTACTGCATTAAATCTGCCAATACCCAAAGAACCTCCTCCTATTGAGCTAGGAGGTACTATGACAACCGACCTACGT TCAAGACAACAACGCATAGCTGAAATAACAGAGATGATCCACGTCAGTCAATTTAAATACTGCTGATAATATATTGTCTG CAGAATATGTTTGAATTAAATTTTATTTTATGGAACTCAATAAGGTGGTTTCTTATGTTTGTTCACAATTTCCCCTCGGA TCTCTTTTTTTTTTCTTTTTTTTCTTAATAGACAATGAAATAATCATTTTCAGGACTTTTTTTTCTTTTAGATTAGCTCA TTCTGCCTCTCTTGTTTGAAAGATTTGCTACTTGTATAAGTCATTATTATATACAGTGAAATTCCCAATGATAATTCTGA AGTACCTCTTTTGTATGGACTTAGAATCTTTTCTCCATTCTTACAAAATAGTGTTGGCACAATTTTGTCCCAGGTGGCAA GCCTTCTTCATGATGATGTACTGGATGATGCAGATACTAGACGTGGCATTGGTTCACTAAATTTTGTAATGGGCAATAAG GTATGTGTATCAAGTTGTGTTCCTTCCATGATATTTTCTACTTGTGTATACTGTCATATTGTGGTCGGTGTAGCTTGCTT TAGTCTTTTTTCTTTTTGTGGCTGCTGTGTTTGATGCAGTTGGCAGTATTGGCTGGGGATTTTTTGCTTTCGCGGGCTTG TGTCGCTCTGGCCTCTTTAAAGAACACAGAGGTACAATAAATGGGTAATATGTTGTATATGTATGTAAAACTGTAAAGAG CTATGATACATCTAAGGTCTTTCATGGTGATCATAATTAAGTATATTTCATCTCCCTAAGGACTGTGTCTCTGTAGGTTG TATCTTTATTGGCAAAAGTTGTAGAGCATCTTGTAACAGGGGAGACCATGCAAATGACTACAACATCTGATCAACGCTGT AGGTATGCTTCTGAGCCTGTTTCTGTCACATTTATAGCATATATGCATTTTCTTTTCCTAGGAAGATGACTTTTAAGTTT TATCTCACAATTATAACTATCACTAATTCATGGTTTCTCCATAAAATTCCTAGATTTCCGTTGACTTTACGAAGTAATTG TCAGTCTTGACCTTTAATTATGCATTTACTTATAGAGACATATAGGAACCTATTGTTTGTTTAATTTCTAACAATTGTTT ATATTTTCAGCATGGAATATTATATGGAAAAGACATACTACAAGACTGCATCATTAATATCAAATAGTTGCAAGGCATTA GCCATCCTTGCGGGGCAAACAGCAGAAGTTGCAATGCTTGCGTTTGAATATGGAAAAAATCTGGTTTGTATATTTGTTAA CAGTTTTAAGTATGATGTTTTCTGTTATAAATAGTGTGTTTAGTGATTAATATTAGATGCTTTGCATAAAGAAAATCAAT GAGACCAAGTGTTTTGGTAATATGTGCACATTTATCTGGCAACATTTTAGTTGATAACTTTCTACCTGTCTGTGCAAGTT ATCTATGTTTCTGTTTTTGAGATTTTCTTGATGGCATAATTTAATTACCTCTCCGCTGTTTTGCAGGGTTTGGCGTTTCA ATTAATAGATGATGTGCTTGATTTCACAGGCACATCAGCTTCCCTTGGAAAGGGTTCTTTATCTGACATTCGACATGTAA TTTCTTAATTTATTCTGATTCTAAATTTCAGTTGTTCCTGATTTGGACTTTTCAGTAATAGTACAGAATATTTTGATGAA AGCCTATGAATCCTGGATGCTCATGTTAGTAAAGAGTGATACATTCCCTGTCAGTAGAGCCATAATTCTTCATTTTTCTA TCTCTATGTTTATGTGGTGCTTATATGCTTTTTTATGGACATTACCTGTGGCTAGGTTTTAATGGAAAAACATATCTCTA TCATTAAACATGTATTAAACTAATTTAAAAAAAAAACGTGTATTAAACTAGAACAAAATTAAATTTTATCACAAACTAAA CGAGAAAAATTATTAATGACAAGCACAGTACTTGCCATCTCTTTGACATGAAACTTTGTCATTAATAACTAAATAAATGT GAAGTACATTCTGCTTTTTCTTGACCGTTTCTTACAGCATTTTGAAATTAATTTTGGCATTGATATTAAACTCTATGCTA AAAACCTTTTTGGGTTGATATCATTTAAAACTTTTGTTTTTAATCTGGTTTTCCTTTCCTGTTATTTTCCATACTAATCT ATGACCTGGTGTTTGTCAAAAAATCATTGCAGGGAATTGTTACTGCTCCAATATTGTTTGCGATGGAGGAGTTCCCTCAG TTGCGTGCAATTGTTGAGGACGGCTTTGAAAACCCTGAGAATGTTGATCTTGTAAGCTAATACTTGTTGCTTGGCTTCAT TTATCCTGCATAATTAGTTCCTATGCTGCTTAACAAAATCAATAACTACTTGAAGACTTTTGGCTTTAGTGAATCTGCCA CTAAAGATGTTACAACTGGTTTCCGTTAATTCATTCGTTTGCTTATTAAGATTCTAGGTCGATAAGATCATTCACAAGGT ATTAGGGCCTCTCTGATAAAGTAGTTCACAATAAAGTCCCATTATTTTCTTACTGTTATAATTAAAATTTCAGTTAGTGA GGCTTCTCCCCTGCTTATTTTGAAGTTGTTAAGGTTTGAAGCTTTACTCAACAAAAATGCTGCATTTACGTTTTTAATGG GCTAGATAACAAAAAAGTAACAGAAAACTAAAAATTTCCAATATTCACGTGGCTCTCCAATATCTCTTATTTGCTTGGCC TCTAGAATAATTGCAAGTTTCCACCTATCAAAATAAATTCAGATATTTTTCCTGAGCAGCTTAACTTCGGTGTCAAGCTG TATAACATGATCTGTTTCAGCTGATTATATATGTATTGAGTTATATACATTATATATGTAATCTATGCGTGTGTGGAGTA ACTTGATCCGTCCTCATATATTGAGTTTTAATTTATACCAAAAACACATCAAGTTAAGGAATGAGGATAACAGGATGTTT CCAGGTGCATCACATGACTACGATTGAACTAAATTCTAGTGGTCCTTTTTATTAAGCATGTTGTAACACAAAACCCACAT CAACAAGCTTATTTGGCTGATTAAATATTTTTGTATTTGTGTGTGTAGGCTCTCGAGTATCTTGGAAAAAGTCGCGGTAT TCAGAGGACAAAGGAGCTAGCCATGAAGCATGCTAACCTTGCGGCAGCAGCAATTGATTCATTACCTGAGAGTGATGATG AGGAAGTAAGAAGGTCAAGGAAAGCACTAATAGATCTCACTCACATAGTCATTACAAGAACAAAATGA
CDS sequence (LotjaGi4g1v0099100.3) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGTATTGTTCTCAGGATGAACATGATCCATTTTCACTGGTTGCTGATGAGTTATCAATTCTTGGTAACAAGCTGCGAGA AATGGTAGTTGCTGAGGTTCCTAAGCTTGCCTCAGCTGCTGAATACTTCTTCAAAATGGGGGTAGAAGGAAAAAGATTTC GTCCTACAGTTTTATTGTTAATGTCTACTGCATTAAATCTGCCAATACCCAAAGAACCTCCTCCTATTGAGCTAGGAGGT ACTATGACAACCGACCTACGTTCAAGACAACAACGCATAGCTGAAATAACAGAGATGATCCACGTGGCAAGCCTTCTTCA TGATGATGTACTGGATGATGCAGATACTAGACGTGGCATTGGTTCACTAAATTTTGTAATGGGCAATAAGTTGGCAGTAT TGGCTGGGGATTTTTTGCTTTCGCGGGCTTGTGTCGCTCTGGCCTCTTTAAAGAACACAGAGGTTGTATCTTTATTGGCA AAAGTTGTAGAGCATCTTGTAACAGGGGAGACCATGCAAATGACTACAACATCTGATCAACGCTGTAGCATGGAATATTA TATGGAAAAGACATACTACAAGACTGCATCATTAATATCAAATAGTTGCAAGGCATTAGCCATCCTTGCGGGGCAAACAG CAGAAGTTGCAATGCTTGCGTTTGAATATGGAAAAAATCTGGGTTTGGCGTTTCAATTAATAGATGATGTGCTTGATTTC ACAGGCACATCAGCTTCCCTTGGAAAGGGTTCTTTATCTGACATTCGACATGGAATTGTTACTGCTCCAATATTGTTTGC GATGGAGGAGTTCCCTCAGTTGCGTGCAATTGTTGAGGACGGCTTTGAAAACCCTGAGAATGTTGATCTTGCTCTCGAGT ATCTTGGAAAAAGTCGCGGTATTCAGAGGACAAAGGAGCTAGCCATGAAGCATGCTAACCTTGCGGCAGCAGCAATTGAT TCATTACCTGAGAGTGATGATGAGGAAGTAAGAAGGTCAAGGAAAGCACTAATAGATCTCACTCACATAGTCATTACAAG AACAAAATGA
Protein sequence (LotjaGi4g1v0099100.3) extracted from Lotus japonicus Gifu v1.2 Proteins.
MYCSQDEHDPFSLVADELSILGNKLREMVVAEVPKLASAAEYFFKMGVEGKRFRPTVLLLMSTALNLPIPKEPPPIELGG TMTTDLRSRQQRIAEITEMIHVASLLHDDVLDDADTRRGIGSLNFVMGNKLAVLAGDFLLSRACVALASLKNTEVVSLLA KVVEHLVTGETMQMTTTSDQRCSMEYYMEKTYYKTASLISNSCKALAILAGQTAEVAMLAFEYGKNLGLAFQLIDDVLDF TGTSASLGKGSLSDIRHGIVTAPILFAMEEFPQLRAIVEDGFENPENVDLALEYLGKSRGIQRTKELAMKHANLAAAAID SLPESDDEEVRRSRKALIDLTHIVITRTK
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Gene3D | 2 | 349 | 348 | 2.6E-134 | ||
| PANTHER | 5 | 349 | 345 | 8.1E-197 | – | |
| PANTHER | 5 | 349 | 345 | 8.1E-197 | – | |
| SUPERFAMILY | 8 | 348 | 341 | 4.84E-81 | ||
| CDD | 31 | 347 | 317 | 6.45076E-82 | – | |
| Pfam | 35 | 294 | 260 | 8.8E-69 | ||
| SFLD | 48 | 343 | 296 | 8.2E-39 | – | |
| ProSitePatterns | 105 | 119 | 15 | - | ||
| ProSitePatterns | 227 | 239 | 13 | - |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Biological process | Isoprenoid biosynthetic process | The chemical reactions and pathways resulting in the formation of any isoprenoid compound, isoprene (2-methylbuta-1,3-diene) or compounds containing or derived from linked isoprene (3-methyl-2-butenylene) residues. |
Expression pattern of LotjaGi4g1v0099100.3, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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