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| Field | Value |
|---|---|
| Gene ID | LotjaGi4g1v0100200 |
| Transcript ID | LotjaGi4g1v0100200.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Myb transcription factor; TAIR: AT4G37260.1 myb domain protein 73; Swiss-Prot: sp|Q9FDW1|MYB44_ARATH Transcription factor MYB44; TrEMBL-Plants: tr|V7CG42|V7CG42_PHAVU Uncharacterized protein; Found in the gene: LotjaGi4g1v0100200 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:13648114..13650448) extracted from Lotus japonicus Gifu genome v1.2.
TAGAATAGATACATGATAATAATGTTAATATGTTAGTTAAAATGAAATGAAAGAGGAGTGCTGAGTTGCGCAAAGGGAAG CATGGAAAACATGACGCGTGTCCAAATACAGCTGTATCCCAAAATCCGAAAGCAACCGCTTCCCAGGAACAAGCGGTATC AAATGAACCCTGACCGACGCAGAAACCACCAAAACCACTAACCTCCTCAGCCGTTTCCCTCTCCCCTTATCCCTCACACA TATAAGAAACACCCAACCACGCTCTCTCTCAATATCTCAAATTCTCACACCCACACTTCCAAATTAAACACCCTAACCTC ACACCAACAACAACAACAACAGAAAAAATCATACAAGAAAATTGTACAACACACCTATAGCGTGATGGCTATGACCCGAA AGGAAATGGATCGGATCAAGGGTCCATGGAGCCCAGAGGAAGATGAAGCGCTTCAGAAATTGGTGGAGAGGCACGGACCG AGAAACTGGTCCTTGATCAGTAAATCGATTCCGGGCCGATCTGGGAAATCGTGCAGGCTGCGGTGGTGCAACCAGCTCTC ACCGCAGGTTGAGCACCGCGCCTTCACTCCGGAGGAGGATGATACCATTATCAGGGCGCACGCTCGGTTCGGGAATAAGT GGGCCACCATCGCTCGCTTACTTTCTGGCCGGACTGATAACGCCATCAAGAACCACTGGAACTCGACGCTTAAGCGGAAG TGCTCGTCTATCTTCGCTGCAGACGATCTCGCCGCCGGTGGTGGTGGTGGTGATTTCTGTCCTCAGCCGCTCAAGCGATC CGCTAGCGCCGGGTTACCGGGAAGTCCTGCCTGGTCTGACGTGAGTGATTCTGGCTGTCACGTGGCGGTTTCACCCTCGC ACGTGTTCCGTCCGGTGCCGGTTCGGCCGTATGTTGAAACGGCGTCGTCGTGTGAGGATGACGACGGACCTCCTACTTCG CTGTCGCTGTCTCTCCCCGGGGTGGACTCTGCTGAGGTGACGAATCGAGCGGCGCCGGTGATGGCTGCTCCGATTTGTCC TGCGCCGGTAACGGTGGTGCCGGCTCAGGTGACGGCGGCGCAGGAGGGTGTGTTTGGTGCGGGTAATTTCAGCTCGGAGT TGATGGCGGTGATGCATGAGATGATAAGGAAGGAGGTGAGGAGTTACATGGAGCAGCAGCAGAATGGGGTGTGTTTTCAG GGTGTTGATGGGTTCAGGAACGTGGCGGTGAAGCGAATGGGGATTAGCAGGGTTGATTCTTAATTAAGTGGATTAGAGAA CGTGATTAGTGTTAATTAATCAAAATGGGGTTTCCTATGCAAGATGGAAAAGCCTTTTTTCCCTTCTGTTTTAGGCAATA ATTTTGGTGATGTATAGAGAGGGGAGAGAGAAAGAGAGAGAAGGGGAAATTAAATTATTTTCCATAGAAGCTGATGAAAG ATAATTATGGCAAATCTGAAGTTTCTCTCTTTGCTTTGTCCTGTTATCCAGGTTTAGTTGGAGGAAAATATTAGATCAGA AAAAAAGAATGGAAGAAAATGGAGTAGGATAAGAACAACATTGAATATCCTCAAATTTTCAGTATGAAGTTTAATTTATT TTCTTATGTGTACAAGCATAAATGTAAATACTTGTTTTAGCTCAAACCCAGAATTAGGCAAATAATTTTATGCGCACCAG CTTCAAAAGGCAAATTGGTAACAATCTTTTGTTTGAGTCTAGTTTTTGTCTGTTATACCTTTGTGGGTCTGAAATCTAGT TCATCAGTTTTCTGTATAATTTTGTGTCCATTTTGCAACCAAGAAATTTTTTGGTGACATACAACCATGAAATTTTGCGC ACTAAGCATCTGTTTGTCTTTATAGAAAAACAACAAAGGTGGGGGTGTTATTTGTTTTATTTGGCTGAGGAAAGAAAATA GATGAACGAATTTGTTAAGTAGACAAAATATAAATCTTCAAGAGCTTTTTATTTATTTATGATGTCTATATAATCTTTCT CATTTTATATGACTAAAAATTTATCACAAACTCCGCTTTTTATTTATTTACTATTTCAACAAATTAGACCAAAAATTTTA TTTATTTTTCATATTTTTTTCGTAATATATGACATTTATCTATATTAATTTTATGGGTTAAACTCTATAATTCAGACATG TAAAGAATAGAATGTTATCAAATTAATGTTCCTAAGGTTTTTATGAAAAATTATGTGTTATACATTAGCCGATAGTAGCC TTTCAACAACACATAGATTGTTGTAATGAGAATTAATTTGGTTAGCAAAATAATGATATTTAAATATTTGAAAGACTATT TTCATGATAAAAACC
CDS sequence (LotjaGi4g1v0100200.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCTATGACCCGAAAGGAAATGGATCGGATCAAGGGTCCATGGAGCCCAGAGGAAGATGAAGCGCTTCAGAAATTGGT GGAGAGGCACGGACCGAGAAACTGGTCCTTGATCAGTAAATCGATTCCGGGCCGATCTGGGAAATCGTGCAGGCTGCGGT GGTGCAACCAGCTCTCACCGCAGGTTGAGCACCGCGCCTTCACTCCGGAGGAGGATGATACCATTATCAGGGCGCACGCT CGGTTCGGGAATAAGTGGGCCACCATCGCTCGCTTACTTTCTGGCCGGACTGATAACGCCATCAAGAACCACTGGAACTC GACGCTTAAGCGGAAGTGCTCGTCTATCTTCGCTGCAGACGATCTCGCCGCCGGTGGTGGTGGTGGTGATTTCTGTCCTC AGCCGCTCAAGCGATCCGCTAGCGCCGGGTTACCGGGAAGTCCTGCCTGGTCTGACGTGAGTGATTCTGGCTGTCACGTG GCGGTTTCACCCTCGCACGTGTTCCGTCCGGTGCCGGTTCGGCCGTATGTTGAAACGGCGTCGTCGTGTGAGGATGACGA CGGACCTCCTACTTCGCTGTCGCTGTCTCTCCCCGGGGTGGACTCTGCTGAGGTGACGAATCGAGCGGCGCCGGTGATGG CTGCTCCGATTTGTCCTGCGCCGGTAACGGTGGTGCCGGCTCAGGTGACGGCGGCGCAGGAGGGTGTGTTTGGTGCGGGT AATTTCAGCTCGGAGTTGATGGCGGTGATGCATGAGATGATAAGGAAGGAGGTGAGGAGTTACATGGAGCAGCAGCAGAA TGGGGTGTGTTTTCAGGGTGTTGATGGGTTCAGGAACGTGGCGGTGAAGCGAATGGGGATTAGCAGGGTTGATTCTTAA
Protein sequence (LotjaGi4g1v0100200.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MAMTRKEMDRIKGPWSPEEDEALQKLVERHGPRNWSLISKSIPGRSGKSCRLRWCNQLSPQVEHRAFTPEEDDTIIRAHA RFGNKWATIARLLSGRTDNAIKNHWNSTLKRKCSSIFAADDLAAGGGGGDFCPQPLKRSASAGLPGSPAWSDVSDSGCHV AVSPSHVFRPVPVRPYVETASSCEDDDGPPTSLSLSLPGVDSAEVTNRAAPVMAAPICPAPVTVVPAQVTAAQEGVFGAG NFSSELMAVMHEMIRKEVRSYMEQQQNGVCFQGVDGFRNVAVKRMGISRVDS
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 5 | 231 | 227 | 7.0E-110 | – | |
| PANTHER | 5 | 231 | 227 | 7.0E-110 | ||
| ProSiteProfiles | 7 | 62 | 56 | 27.023 | ||
| SUPERFAMILY | 9 | 105 | 97 | 2.43E-32 | ||
| SMART | 11 | 60 | 50 | 1.5E-17 | ||
| Gene3D | 11 | 63 | 53 | 1.4E-23 | – | |
| CDD | 14 | 56 | 43 | 3.27691E-17 | ||
| Pfam | 15 | 72 | 58 | 2.2E-17 | – | |
| SMART | 63 | 111 | 49 | 2.9E-14 | ||
| ProSiteProfiles | 64 | 113 | 50 | 20.757 | ||
| CDD | 66 | 109 | 44 | 4.74465E-12 | ||
| Gene3D | 66 | 112 | 47 | 9.2E-20 | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | DNA binding | Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid). |
Expression pattern of LotjaGi4g1v0100200.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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