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| Field | Value |
|---|---|
| Gene ID | LotjaGi4g1v0100800 |
| Transcript ID | LotjaGi4g1v0100800.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | F-box family protein; TAIR: AT5G67250.1 SKP1/ASK1-interacting protein 2; Swiss-Prot: sp|Q9FE83|SKIP2_ARATH F-box protein SKIP2; TrEMBL-Plants: tr|K7KP92|K7KP92_SOYBN Uncharacterized protein; Found in the gene: LotjaGi4g1v0100800 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:13837385..13839509) extracted from Lotus japonicus Gifu genome v1.2.
CCTTTGACGGGTGAATCAAACATCATGTAAATAAAACCATGTTTATGTTCCACTCATAAACCGCATTGCTTGTTTTGTTC TATACTTCTTCTCTTCCATTCAAACCACCACTCTCTCTCTCTCTCTCTCTCTCTCTCTCTAAAATGGGACAGTCACCGTC CACCCCCGCACCGTCGCCGGACCACCACCGCCGTGACATTTTCACCACCATCGACGCCGATTTCCCCAACGACTCCCTCA TCCGTGACTACACAGCCGAAATCCCCGACGAATGCTTGGCTGCGATCTTCCACCTGCTAACCACCACCGACCGGAAAATC TGCTCCGCCGTTTGCCGCCGCTGGTTGCGTGTCGACGGTGAGAATCGGCGGAGACTTTCCCTCAACGCCGAGGCGAGCTT GCTGGACGCGATTCCCTCCTTGTTCAGCCGGTTTGATTCGGTCACGAAGCTGTCCCTGCGATGCACACGCAGGGCCACGA GCATAGGTGACGATGGTTTGATCCTGATCTCGCTCCGCTGCAAGGGGCTTGAGCGGCTTAAGCTTCGTGGCTGCAGGGAG ATCACGGAGATCGGGATGGTGGGTTTCGCTAGGAATTGTGGGAAAACCCTAAAGAAGCTTTCGGTTGGTTCTTGCATGTT CGGTGCGAAGGGTGTTTACGCTGTTATCGAACACTGCACGGTGCTTGAAGAGCTTTCCGTGAAGAGGCTCCGAGGGGTTG ACGGTGATGGCGGTGAATCGGTTCCTGGGGTTTCAATTGAAGGGGTTTCGTCTTCGTTGAAATCGTTGTGTCTTAAGGAG CTTGTTAATGGGCATAGCTTTGCGCCTCTGATAATTGGTTCCAAGAAGCTTCAAACATTGAAGCTGATTCGGTGTTTGGG GGATTGGGATGCGACGCTTTCAACGGTTGGAAGGGTGAATTCTGGGTTGGTTGAGATTCATCTGGAGAAGGTTCAGGTCA GTGATGTGGGTCTTGCTGGGGTGTCAAAGTGTTTTAATTTGGAGACCTTGCACCTTGTGAAAACCCCTGAGTGTTCGGAT TCAGGGCTCTCTGGGGTTGCTGAGAGGTGCAAGATGTTGAGGAAGCTTCACATTGATGGGTGGAGGATTAACAGGATTGG TGATGATGGGTTGATTTCTGTGGCGAAAAATTGCCCTAATTTGCAAGAGCTTGTGTTGATTGCTATGTATCCTACCTCTT TGAGCTTGGCTGAAATTGCTTCCAATTGTCAGGGTTTGGAAAGGTTTGCTCTTTGTGGAATTGGGACTGTTGGTGATGCT GATATTGAGTGCTTTGCTGCGAAATGCGGGGCACTCAAGAAGATGTGCATTAAGGGATGCCCTGTGTCTAATGCCGGGAT TGCCGCTTTCGCTTCCGGTTGCCCCAATTTGGTTAAACTCAAGGTGAGGAAATGCAGAAAAGTTACTGGTGAAATTGTGG AGTGGCTGCGCGAAAAGAGGAGTTCTTTGGCATTTAATTTTGATTACAGTGAAGTAGAACCTTTGGATGGCAATGGTAGT GATGGTGGAGCTCGGGAAACTACCATGGCTTTTCCTCCAATGGATACCCAAGTAAACCTTGCTGATGATGCTCCTTCAAG CAGTAACAACAACAACAACAACCGAGTGTCTATGTTCAGGACCAAGTTTGGATTTTTTGTTGGTAGGAATTTTGTGCCCT GTGCCTTCAGAAGGTGGGCAAACATTGATAGTATCCCTAGTAGCAGCTTTTCATGATCATTAGTAAGAATGGTAATACAT TATTGCCATTTTTCACTGTATCCCATGAGCTCTGCTCTTGTGTGTTCAGTGGCATGTTTCCTTGAAGATTTGCTCACTGA ATTTTGTTTTCCTATGGGGATAATAGCTGTTGTTGTTAATGTTAACTACATGTAGGCAATTACCTTCATTGACTTGTCCT GTTTGATTTGTTGTTTTGATGGTTAATATCATTTCTTAGTTTTCTGTTTGAGCAATTATTGAGTATAGTATTCACAGGCA AAATCAATTTAGTTCAAGATAAATAAAATAATAATGTTCCTCAATGCAATAGTGTTCTTTCTTTTCTGTTTTGCGTGGAA GTTGCATGTTTAACAGGAGTGGAGGACCATTTTCTTGGTCAACAG
CDS sequence (LotjaGi4g1v0100800.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGGACAGTCACCGTCCACCCCCGCACCGTCGCCGGACCACCACCGCCGTGACATTTTCACCACCATCGACGCCGATTT CCCCAACGACTCCCTCATCCGTGACTACACAGCCGAAATCCCCGACGAATGCTTGGCTGCGATCTTCCACCTGCTAACCA CCACCGACCGGAAAATCTGCTCCGCCGTTTGCCGCCGCTGGTTGCGTGTCGACGGTGAGAATCGGCGGAGACTTTCCCTC AACGCCGAGGCGAGCTTGCTGGACGCGATTCCCTCCTTGTTCAGCCGGTTTGATTCGGTCACGAAGCTGTCCCTGCGATG CACACGCAGGGCCACGAGCATAGGTGACGATGGTTTGATCCTGATCTCGCTCCGCTGCAAGGGGCTTGAGCGGCTTAAGC TTCGTGGCTGCAGGGAGATCACGGAGATCGGGATGGTGGGTTTCGCTAGGAATTGTGGGAAAACCCTAAAGAAGCTTTCG GTTGGTTCTTGCATGTTCGGTGCGAAGGGTGTTTACGCTGTTATCGAACACTGCACGGTGCTTGAAGAGCTTTCCGTGAA GAGGCTCCGAGGGGTTGACGGTGATGGCGGTGAATCGGTTCCTGGGGTTTCAATTGAAGGGGTTTCGTCTTCGTTGAAAT CGTTGTGTCTTAAGGAGCTTGTTAATGGGCATAGCTTTGCGCCTCTGATAATTGGTTCCAAGAAGCTTCAAACATTGAAG CTGATTCGGTGTTTGGGGGATTGGGATGCGACGCTTTCAACGGTTGGAAGGGTGAATTCTGGGTTGGTTGAGATTCATCT GGAGAAGGTTCAGGTCAGTGATGTGGGTCTTGCTGGGGTGTCAAAGTGTTTTAATTTGGAGACCTTGCACCTTGTGAAAA CCCCTGAGTGTTCGGATTCAGGGCTCTCTGGGGTTGCTGAGAGGTGCAAGATGTTGAGGAAGCTTCACATTGATGGGTGG AGGATTAACAGGATTGGTGATGATGGGTTGATTTCTGTGGCGAAAAATTGCCCTAATTTGCAAGAGCTTGTGTTGATTGC TATGTATCCTACCTCTTTGAGCTTGGCTGAAATTGCTTCCAATTGTCAGGGTTTGGAAAGGTTTGCTCTTTGTGGAATTG GGACTGTTGGTGATGCTGATATTGAGTGCTTTGCTGCGAAATGCGGGGCACTCAAGAAGATGTGCATTAAGGGATGCCCT GTGTCTAATGCCGGGATTGCCGCTTTCGCTTCCGGTTGCCCCAATTTGGTTAAACTCAAGGTGAGGAAATGCAGAAAAGT TACTGGTGAAATTGTGGAGTGGCTGCGCGAAAAGAGGAGTTCTTTGGCATTTAATTTTGATTACAGTGAAGTAGAACCTT TGGATGGCAATGGTAGTGATGGTGGAGCTCGGGAAACTACCATGGCTTTTCCTCCAATGGATACCCAAGTAAACCTTGCT GATGATGCTCCTTCAAGCAGTAACAACAACAACAACAACCGAGTGTCTATGTTCAGGACCAAGTTTGGATTTTTTGTTGG TAGGAATTTTGTGCCCTGTGCCTTCAGAAGGTGGGCAAACATTGATAGTATCCCTAGTAGCAGCTTTTCATGA
Protein sequence (LotjaGi4g1v0100800.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MGQSPSTPAPSPDHHRRDIFTTIDADFPNDSLIRDYTAEIPDECLAAIFHLLTTTDRKICSAVCRRWLRVDGENRRRLSL NAEASLLDAIPSLFSRFDSVTKLSLRCTRRATSIGDDGLILISLRCKGLERLKLRGCREITEIGMVGFARNCGKTLKKLS VGSCMFGAKGVYAVIEHCTVLEELSVKRLRGVDGDGGESVPGVSIEGVSSSLKSLCLKELVNGHSFAPLIIGSKKLQTLK LIRCLGDWDATLSTVGRVNSGLVEIHLEKVQVSDVGLAGVSKCFNLETLHLVKTPECSDSGLSGVAERCKMLRKLHIDGW RINRIGDDGLISVAKNCPNLQELVLIAMYPTSLSLAEIASNCQGLERFALCGIGTVGDADIECFAAKCGALKKMCIKGCP VSNAGIAAFASGCPNLVKLKVRKCRKVTGEIVEWLREKRSSLAFNFDYSEVEPLDGNGSDGGARETTMAFPPMDTQVNLA DDAPSSSNNNNNNRVSMFRTKFGFFVGRNFVPCAFRRWANIDSIPSSSFS
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 23 | 528 | 506 | 1.3E-252 | – | |
| PANTHER | 23 | 528 | 506 | 1.3E-252 | – | |
| SUPERFAMILY | 27 | 70 | 44 | 3.79E-8 | ||
| Gene3D | 38 | 72 | 35 | 4.7E-8 | – | |
| Pfam | 38 | 70 | 33 | 1.6E-6 | ||
| Gene3D | 83 | 470 | 388 | 6.0E-60 | ||
| SUPERFAMILY | 87 | 445 | 359 | 5.1E-37 | – | |
| SMART | 126 | 151 | 26 | 0.013 | ||
| SMART | 283 | 308 | 26 | 36.0 | ||
| SMART | 309 | 336 | 28 | 16.0 | ||
| SMART | 337 | 361 | 25 | 440.0 | ||
| SMART | 362 | 387 | 26 | 140.0 | ||
| SMART | 388 | 412 | 25 | 5.7 | ||
| SMART | 413 | 438 | 26 | 140.0 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of LotjaGi4g1v0100800.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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