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LotjaGi4g1v0102800.1

Overview

Field Value
Gene ID LotjaGi4g1v0102800
Transcript ID LotjaGi4g1v0102800.1
Lotus japonicus genome version Gifu v1.2
Description Protein translocase subunit SecA; TAIR: AT5G67170.1 SEC-C motif-containing protein / OTU-like cysteine protease family protein; Swiss-Prot: sp|B1AZ99|OTUD3_MOUSE OTU domain-containing protein 3; TrEMBL-Plants: tr|V7CF51|V7CF51_PHAVU Uncharacterized protein; Found in the gene: LotjaGi4g1v0102800
Working Lj name n.a.

Sequence information

Genomic sequence (LjG1.1_chr4:14239276..14248370) extracted from Lotus japonicus Gifu genome v1.2.

GTAGAGCATGACGTAAAAACTAAAAATGTGTGCTCAGATATGATAAATATGAAAGTGAAAGAGATATAAACCTTTAAACA AAGCTATATCTAGAAAGTCACATTGAACTTATCAAAAAAATTAAAACAATATTAAAAATCTTGTAAATGACAGTGTTGTA GCTGCAAACAATAGTAAAAAGTAAGGTTTTTATTAGTACGTCGAAAAGATAAATTGCACCCTCTTAGGATTGATCTCTAG ATCTCTCTCATCCAACCTATATGGCATCTAGCCGTTACCACTTGAGCTATCACTCAAGGACAGATAAAAGTAAGGTCAAA AGTTGACAATATTAATAATTTGAGGAATGTAATATTTTTATAATTTGAGGGTGTTGCCAATGATTTAAATTCATTCAATA TTCAAATGGTTGCCTGGCGGCACTTACAACATGAGAGAATAAGTCTCAAGGAGCGATAACGCAATGCAGAACATAAGCAA ATTAAGTACAAGCATGCACACTCAAACAAATAAGCTGAAACAACCAGCAAAAACATGATGCAAGAACCATAATGGGTAAA CTTAAATCCGCCACTAGTGAACATCAGTTCCAAGTTAGTGATTGTTGATATTGATTTTTTTTTCGTATGATATTTTTATT TTTTGGTCAGTCGTATGACCTTTTGTTTTTCCAATGATTCCACGTTGCTCAGAAAGAAAAGGCCAATTGAGTAGCCCAGG CTTACAATAACGTTCCAGAAAAAACATTAGGCCCAATAAGCTGCAAGAACAAGGAACAAGTTGGGCCCAAATAAGCTGGA ACTAAGAGAGAAGTGAAACAAATCAACAATCGCGTGGTTTGGGCCCAGTTAGAATATTGAAGCCCACAGGCTCGTAACTC CTAACTTTCTAATGGCTTCTGCTTTGAGTTGCCTCTGGTTTTCGTTCCATATCTCGCTCAGTGCTCTCTGAAATCCTTGA AATCTCAGGTTCTTCAATTTACGACGAGGACATGGCTAAGCCGAAGCAACAGAAGAAACCACCTCAGAAGAAGCAACAAA ATCCACAAGTACGCTTCAGCTTCTGCAAATTTTGGTGTTTTTTCCCTGCTAAACACTCTCTCTGCATTCAATCTTCACTA GTTCTTCAATTAATTGATAGTACGTTTGTATTTGGATTCCCAATTTGTTAATTTTCCAGTGTCTTTCTGTGTTTTTAATG CTTTACTTAAAATTCTTTTGGACTGAGATTAGTGTTGGTTTCATCTTTCAATTTTTAAAAGTGCTACTCAAATATTGCAT TGTTGCTCAAAGTGATAATTTTGTAAACCTTGTGCTTTGAAAAGTGTGCCTGATGGTCTTGGACTCTTGATCATGATTTT TACTTCTTCTTTTTGATCATGATCATGTGACAAACTGATTGTAGAAAATCTCATTTTATTTCTACTGTTGATTTAATAAG TTAGAATAGTGTTTCATCATAGGTTAATATGTTATGTAAGAAATCCAATTGTCAGTTTGGAATGCTTCTAGTTAATAAGT GTTATTTGGATACTCTGGTTATTGGTGACTCATCATCAATTTGGTGACAGACTAAGAAGCTGGGAAAACATGATACTGCT CAATTTCGGTCTCAGTTGGATGCTTTAGGCCTACGCATTGTTGAAGTGACATCAGATGGTAATTGTTTCTTCAGGTCAGT TTCGATCACGATCTTCTGCAGTTGTTAGAAGCTGCAAGGATCTCAACCGTTAAAATTTGTTTCAAACTAAGTAAAATAGT GATAAATAAATTAGTAAGATAATTTTTAATGACGAGATCATGAACTGCGCAGCCTGCAGTTAGTTTTGTAATAGAAGCTG ATCCTCATCCGGTCAGTTTTAACTATTAATACTTCACATCCATTTGCACTTACTATTATTTGTATCATGCATGTTGGAGT ACCAGTTTTCTTCAGAAAGTGTTTATGTGCTGTCATGTACTAGGTATTTTCATGTATATATAAAGACCCTGAGATCTTGG CACTATCAGTTATTAATTTTTTGTCCTCAATCTCCTCCCTTTTTTCAATTTTGTTTAACGTCACAGTGGTACATGGTATT TACTTTTTAGTTTTTACAGTATAATGAGTCAAACATGTCTAGAGCATTGTATATTAGTTTTTCATCTACTCTCTTCTATT CTTATGCAGAGCCCTTGCTGATCAGTTGGAAGGCAATGAGGAGGAACATCAAAAGTATCGCAGCATGGTGGTGAAACACA TACTGGTATGATGTTTCAGAAACAATTTATTTGTTTCTTTCTTATAATCTTTTAACTTGATATCTTTGAGTTTCAGTGTT ATGAATTGTTTATGTGATAATTTGGATCCATATTGATTTTGAAATTCATAGCATGATTATAGATGTAACTGATCGATTGT CCCCTCGTTTCCCCTTATCCGTAGCATTTTACTATTGTTGATACAAAACTGTGGGAAGAAAATTTATCGTGGCCACTGAA AGATTATCAAATCAGAAGTCAGAACTTTTATCTTGTTAATCACCTGAATATTGACAGTTAACCTAGTAAATATGAGGACA GTTGGGAAAAATGAAATCATCACATATTCTTGCCAAAATGCTGTCCATTTTTGACAGTGATGTGTGTTTATGTACATGAC AAAAACCATTGATTGAGGCTGTTGACTTTCTTGAATATTCACAAACTGGATGACATCTTACCATGTGGATGCACATGCTA ATTCTCTACTACTACTGCTAGGTTTCCCATGTCAGTTCCCCCCCCCCCTTTTTTGTAATTGGGAAACTTCTTCCATAACC TGGTCTTGAAACTATAACTAACAGGATAACCGGGAGATGTTTGAGCCCTTTATTGAAGATGAAGTCCCATTTGATGAATA TTGCCAGTCTATGCAAACTGATGGTACATGGGCTGGACATATGGAATTGCAGGCAGCTTCTCTTGTAACACACAGTAACA TATGCATCCATCGGGTGAGTTGTATCCTTAAAGATAATCCATTCCTTTCCATATATTCTATTGTCACATCTTTTAATGTG TTACATTGATAATTAGTTAGACTATTTATACTTTTAACTGAAGAAGATTGGGGCAAGCCATAGGAGATTTTTCCACATTA TATCATCTTTGTACCATAAAATTTTGTTTTTGAATGTGTAAGCTTTGTTCATTAATATGCGCAAACAGAAGACACATTTG TGCACACAAACAAGTTCTTCTAAAGTTACTAGATTAGATTTTGCATGTTCTTACTCCGTAAAGTTAATTGAAATTTACAT GCTTATTGGTTTGCTTGTGCAGAACATGTTTCCTCGGTGGTACATAAGAAATTTTGATGATCGTGGAGCTCATATGATCC ATTTGTAAGTACTATGGAGTCTATGGTTATTACTTGAAATTGCACTGCATTGTTTAGTTTGTCTGAGCCTTGTATTCATA TTTTTTATATGTTAAATCTTTGACTAGGCAAAATATGCCTGAGTTATGATTCATACACACCTCCACTCCTTTTCCACCTT CATTTTCTATCTATTTCTCTTTTCTCTATCAATCAAATCACCTATCACATTTTTACTTTCTCTCTTCTTTCTTCCTATCT CTCTCTTCCTCCACCTCTTCACATCTAAAAAATGAGGTGTGAACACAGAATTAGTTGTTTCTTGGTCTTCGTGCAAAAAT TTGGAGTCCTATGCTTTCACGTATTCAATTAGTTGCAACAATACCTTAGAATCACACAAGTAAATGTCCACCATTTATGA ATGAAAAATCTTAAATGATTTTTCCGAAGATTTGAATCCTATTATTTATTAGTCTTTTACAGATATTATTGATATGTGCT GGAGTAGTTAGTAGTTGATCAGGTGAATCACACCATTTTCTCATTTTAGGAAGAAAAGCTCTTGTAATGTTGTCCAATGT GCAATATATATCTGTTTAACCATGTAATTTAGATTTAAGGTATGCATTATCAATAGCTGTTGAACAAATAACTGTCTTGA CCTTGCATGTGAATTTTGATGGTTAATTTTGTATTGTTTTTCCAGGTCTTACCATGATGGGGAGCATTATAACAGTGTGC GGTTGAAGGATGATCCTTGTGATGGGCCTGCAAGGTCAATTTTAATTAAGGTTCTTATTCTAAATCTATTTCCCAACTGT CAAATTAACGTTAAGCGAAGTAGCTATTGCCTGATTAATTCTAGTTTATGAAAGGCTGATGCTGATCTTTCAGCGCCATC ACATCAAACAAAAGTTACGGCAAACAAAACCTGTAGGCAAGCTGGTAGGGAAGTTCTTCAGCTAGGGTCCATAAAGTTGG TTATGGCTGGAACTGGATGCGACAACACTGCAAAAGTGGAACAGGTGAATGATTGCAGACCTTGTGTCTGTTTGTATGTT TGTATTGTAGGACTAATATTTGGGTACAGGGACATTTCTTGCAAGTTGCTGCCTTTTCTAGAAATTAACTTGACAAATAT TAAAATATGTCTATCTTGTCCCAGATTCTAGAGCAGGTAAATGGAGATGTTGATGCTGCGATAGAGTTTCTAATAGCTGA ACAAGGAACAGAAGAGTGCTCTACAAAGCCTGATTCCCTTCCTGGTCAGGTTACTACTTCTGGTAATGTATAGTCAATGT ATTGCGCTCTTTCTGTACTTTTAGAGGAAAAACGAACATGAAACATATATTTCTGTCCAGAATTGGTAATTTTTTTATTT TTACTTTTCTAGTATATTATGTCTTCGCGGATTCATACATGTTTGTGTTAATTCATTACCATTTAGCATCAAAATTATGA TTAGTAGAAAAGAAAGATAGGTTTTTATTCTATTTTAACTCTTATCTCAAATTTCTATGATGTATAGGTCATGATGAAAA TAAGAATCATGACCAACACAAAGAAGACTTGTTAGAGGACAGCTCTGATGATGAATCAAACAACAGCTCCAGTAAGACCA ATGACAATATCACATTGCCAAAAAATGACAAGGTTTTGTATTTTCTACTTTGGTTCATTGGTGTTTTATGTCTGGGGGAG GGGGCATGATCCAAAATAAATATGCTGTTCAAGCTTGCAGTTCTAGTATTATCATCCCCTTTGACACTCTTTTTTGTTGT TCTTGCTGCTCCTTATTTGTAGAGCTCACTACAGAAGATTCCTAGAAACAAGGTCTGCCCTTGTGGTTCAAAAAAGAAAT ACAAATCTTGTTGTGGAACTACCTTGGGGAGACAATCTGCTAAATTTGTAGTGTATGCATCGTACTACTTTCTTGTATAG TCCAGTTTCAAGTTTCAAACTTAAAACTATTCAGATAATGTCTATAGAATGTTTAGAAGGTTTCTTTTTCAGGGATCTCA CATGATGTCCCTGGATTTTAAGTTTGCTGACATAGTTTTGTGTACTATAAAAAATGTAATCCAGTACAAGTATATGATTT TAATGTGGCGTGACCAATTCTTGTTTCAGTAACCAAGCAGATGACTCCAAAAGGGGAAGAAAAGAAAGGAAGCAAGGAAA GAAAGGGATTTCTGCAAAAGCGGAAGCACCTTGTGACTCTGTGACACCTGACATGGGTGCACTTTGTATTTAAATTGATA ATAAATGTATGACTTATACCTTGTATTGTCCACAAAAACTTCTCCTTGCTTCATGAAAATGACTCACGTGTTCTTGTCTC CTACAGAAAAAGTTAAATTGTGCTGCCCCCCCCAGAGGATAGAAACTACTGAGAGGTAAGTTTTGGTTGTATGGTCTTCC TGATTTGCATGTTTACTGAATGGCATATAGGATAACTACCACTTTTTACATTGCCATTGCTCATGTTATGTCAGGTGGTT GATATATTTCATGATAATTCATATCTGTTTCTATTAAAAAAAATTAATTCTCCCCAGATCATTATATCTACAAGACTACA ACTGAGGTGCTCACTGTATAAAAGTGCTCAGTTCATACTCAGGATTTCAGAAGGTATCTATTTCCCTTCCATCTAATATT GAACATAGCTTTTAATAATCCTACATGATGCCATCATTAAAGTAATTGGCTACCAAGATGCTAGAATAAATCATATATTA GGATTTACGACTTAGAACCACATTACGCATACGTTATTATTTTCCTAATATGCAGTTTTCTTTCAGTAAACAGGTTCCCA TTTTCAAGAAGCAAAATTTTGAACCAGAAAAAGGATATACAAAAGGAGAAATGATGTTATAACATCATTTATAATTGATA TTCTTCACGCAATAGTCTTTTGGGAAGAATGTGAAAGTCTTGATTTTTTTTCCTATTAGAGATCTTGAAAGAAAATCAGT TTTGTCTGAAAAAATATCAACAATGATTCAAATTAGCTCTGTTGGTCTTCCCAACATGTCATTGGCGTTCTGCCCGGTAG TCTGGAGGTGTTTTCTCTCCGTTCTACCACTTTTGTAACAAAAACAATGATTCATAGTAAAAGATTAGTGGCTCGATAAG TTAATCTGAACTTATCACCTTCGATTCTTTTAGGCTAAAGGATCAACATATATGATGAATCAAACGAGAAGAAAACGATA ATTATAGGGTCTCAGTAATCTTAGCTGTGCCAAACGAAGCTAGCCATTTAACTTCTCATTTTTACCAGTTTTAGTTGGGG TATCCAATCCACCAACCCGCCTAACCTTCTCAGCTTTAGCCAACTAAAGAGCGAGGGATCATGGAGTGTTCTTCCCATGA ATATATGCTGGGAAATTCCTTGTTCAATGGTGGTGGTAAACGATGGTGGTATTTATGGTAATGATTGAGTGCACAATGGA GCAATGAGAATTCACTGAGGGATACCTGTAAAAGGCATTTTGACTGTCAGGTTCTGTAAGTCAATAAGAGCAATATGATA GCAATTATGAGTAATGTTTAACTTAGTGTATATATATAGAGTCTTAAGTGAATATAGATGGGAGTGTTTAACCTTTGGCA GATTCTTATGTAACTAGCACTTGAGGTGCCAACCTTACTTTGGTGAACTTGACCGACAGTTCTATTAACTTAACCTCAGG TTGGTATCGATCTCATTGAGAGCATGACCCTAAACAACAGAACTCAACGATTAGGCTTTGAATCTACGTCACCAACGACG CACAAGAATAAGAACTAGTACACCCTGCTCTTAACTGATGAATACTACATGCTTAGTTTGAGTCAATGGCTACCTTGATA AAGCCTCTTTGTCTGAGCAAACGTAACCCCACAACAATTCCCTAAAACCCAACATGCATTTCAAGCTTCTTGAAGAAAAC AAACACAAAAGCACCAGAGGGAGGAGGCCTCTAGGGTGCAAGTGCTCTCTAGGTCTTGCACCATGCAAGAGCCAATTTAA CCTGTTATAAGAGGTAACTATTACCTGCTGAAAAAATAAATAAAAATATATGTTACAATAATACCTTTCCTCTCTCTCCT TCCTCCCCACCGGAATCCCCCATTACTGGCAGACATGGCAAGTAACTGGACCTCATGTATCAACAACTTGAAAATTTTCC AACCAACCACGATTTGTTCTTCACCTCTATCTGCATCATCAAAATTAGAAGGGATTAATGAATGAATGCAAATTTTACAA TCTGCACAAAGGGATTACACGGATACTGCCTTAGAACCACAAAAGTAGAATCAACAAGAAAGTTCCGTGGTTGAAAACAG GATTCCAACCTCACCGGCTCCCTCTCCAACATCGATCTCTGTTTCGGCTTTCTCTCTAGCGCACCTGCACCCCACGCCAC CACCAGCACCTTCCCTCTCGCAAAGCCATATACACCCACAAGACCCTCAGCAAATCCATCACCGTTTGCAAGTGAAACCA CGAGAATTAATGGCTGATTTGGTGAGATGAAAGCCACCTTGAACTTCGCCCATCACCGACAGCGGCGAACACGTCGGAGC TCGTCGTTGGCTTCCCCGTGCGAGTGAGCTCCGGCGAAAGGTACCCCATCGTTCCGACCACCCTCGTCGTGGTAGGGTTC GATCTGAACAGATGTGGTGTTTGGGAAAAAGGGTTCGATCTGAGCAGATGACGACGTTCGAATTCCAGAACCGTGAAGAT AAAAACCCAGATCTGCAATTAAAACTCTTATTTCTACTGGTTGAACTCTGATTTGTGGGAAAGACAAAGAGACGGTTGTG CGGTGGATGGCCGGAACTCTGCGACCGTTGTCGCCGCAGTGAGTGGCCGGAGATGGCCTTGGTGGTGAGTTTGACCGGTG AAGAGGTTGAGAGAGAAAGGATGAGCCACCCAGGGTATTCATGTAAAAGACAAATTATATTTATAATAAATAATATAAAG CAAATTACAAGTTGAACTGGAAAACCTGGTTCCCCATTCCCCTCCCTGCCAGGTGTTGATATTTCATTGGCCATTTCATG TATGGCACCGGTGCAATACCTAAGATGTATTGCACCTTATACTCCACCCCAAAGGGAGCATTTAAATTTTTGTAAATGCT AAATTCTTAGGCATAGTTTACTCCCGGGTAAATCGTATAAATGTGTTTGGTAGATATTTATATTCCTAGGAATATTTTTA AATTTTATTTAATTAAAGAAATAGAAAAACATGTCATAGAATTGTAGAAGTTGTCACAAAAATGATAGCTCAAGTGGTAA GAGCTAGGGGACAAATGAGTTGGGTGAGAGAGGTCTAGGAATAAATCATTGAAATGTGCAATTTATCTTTCTAATGTACC CGAAAAAAAATTATAGAAGTGGAAAGTTATTTTCAAATGTAACTTCTCACTTTATAATATCTTGCTGTTATTTTGTGATG TAGCTAATTGAAACAGGAATGGTAGGGTTTAATCCGGCGGGCGAGGTAGGTGATTCAACTCACCAATTTTCCATATTTGG CCCACCGAGCCAACCCGTCATCCTATTGTGTTTCACAACACTAACCTTTTGAGATTATGCATATAAATATTTAAATATTA TATATATATATATATTTTTGTAAACTAATTTAAGATTATTAAGTGATTTGATACATTTATATTTATACATATAATAGTAA TAAAATAATATGCGCGTTTTTTTTTGGTACAATATGCCTGTAACACCATTTGTTT 

CDS sequence (LotjaGi4g1v0102800.1) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGGCTAAGCCGAAGCAACAGAAGAAACCACCTCAGAAGAAGCAACAAAATCCACAAACTAAGAAGCTGGGAAAACATGA TACTGCTCAATTTCGGTCTCAGTTGGATGCTTTAGGCCTACGCATTGTTGAAGTGACATCAGATGGTAATTGTTTCTTCA GAGCCCTTGCTGATCAGTTGGAAGGCAATGAGGAGGAACATCAAAAGTATCGCAGCATGGTGGTGAAACACATACTGGAT AACCGGGAGATGTTTGAGCCCTTTATTGAAGATGAAGTCCCATTTGATGAATATTGCCAGTCTATGCAAACTGATGGTAC ATGGGCTGGACATATGGAATTGCAGGCAGCTTCTCTTGTAACACACAGTAACATATGCATCCATCGGAACATGTTTCCTC GGTGGTACATAAGAAATTTTGATGATCGTGGAGCTCATATGATCCATTTGTCTTACCATGATGGGGAGCATTATAACAGT GTGCGGTTGAAGGATGATCCTTGTGATGGGCCTGCAAGGTCAATTTTAATTAAGGCTGATGCTGATCTTTCAGCGCCATC ACATCAAACAAAAGTTACGGCAAACAAAACCTGTAGGCAAGCTGGTAGGGAAGTTCTTCAGCTAGGGTCCATAAAGTTGG TTATGGCTGGAACTGGATGCGACAACACTGCAAAAGTGGAACAGATTCTAGAGCAGGTAAATGGAGATGTTGATGCTGCG ATAGAGTTTCTAATAGCTGAACAAGGAACAGAAGAGTGCTCTACAAAGCCTGATTCCCTTCCTGGTCAGGTTACTACTTC TGGTCATGATGAAAATAAGAATCATGACCAACACAAAGAAGACTTGTTAGAGGACAGCTCTGATGATGAATCAAACAACA GCTCCAGTAAGACCAATGACAATATCACATTGCCAAAAAATGACAAGAGCTCACTACAGAAGATTCCTAGAAACAAGGTC TGCCCTTGTGGTTCAAAAAAGAAATACAAATCTTGTTGTGGAACTACCTTGGGGAGACAATCTGCTAAATTTGTAGTTAA CCAAGCAGATGACTCCAAAAGGGGAAGAAAAGAAAGGAAGCAAGGAAAGAAAGGGATTTCTGCAAAAGCGGAAGCACCTT GTGACTCTGTGACACCTGACATGGGTGCACTTTGTATTTAA 

Protein sequence (LotjaGi4g1v0102800.1) extracted from Lotus japonicus Gifu v1.2 Proteins.

MAKPKQQKKPPQKKQQNPQTKKLGKHDTAQFRSQLDALGLRIVEVTSDGNCFFRALADQLEGNEEEHQKYRSMVVKHILD NREMFEPFIEDEVPFDEYCQSMQTDGTWAGHMELQAASLVTHSNICIHRNMFPRWYIRNFDDRGAHMIHLSYHDGEHYNS VRLKDDPCDGPARSILIKADADLSAPSHQTKVTANKTCRQAGREVLQLGSIKLVMAGTGCDNTAKVEQILEQVNGDVDAA IEFLIAEQGTEECSTKPDSLPGQVTTSGHDENKNHDQHKEDLLEDSSDDESNNSSSKTNDNITLPKNDKSSLQKIPRNKV CPCGSKKKYKSCCGTTLGRQSAKFVVNQADDSKRGRKERKQGKKGISAKAEAPCDSVTPDMGALCI 

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
MobiDBLite 1 27 27 -
SUPERFAMILY 21 162 142 2.84E-38
Gene3D 26 164 139 5.4E-50
PANTHER 28 228 201 9.6E-49
PANTHER 28 228 201 9.6E-49
ProSiteProfiles 40 164 125 19.833
Pfam 46 134 89 3.3E-13
CDD 226 244 19 0.00899599
MobiDBLite 252 311 60 -
MobiDBLite 252 268 17 -
Gene3D 264 337 74 7.4E-8
MobiDBLite 269 285 17 -
MobiDBLite 292 311 20 -
SUPERFAMILY 314 336 23 4.91E-6
Pfam 317 334 18 4.9E-6
MobiDBLite 347 373 27 -

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

Unable to find any GO terms for the transcript with the identifier.

Expression data

Expression pattern

Expression pattern of LotjaGi4g1v0102800.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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