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TREX

Transcript Explorer
for L. japonicus reference genomes

The Transcript Explorer tool can be used to search for candidate Lotus genes using user-defined keywords, or to comb a specific genomic interval—a combination of chromosome and position range—for genes/transcripts of interest.

Repeat Search

  • PF02338
Separate each keyword, or gene/transcript ID, with a comma or tab. Spaces are not accepted as delimiters due to their potential use in boolean searches.
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Download the entire search result as a CSV file.

We have found 32 results. Now displaying 1 of 1 with 50 rows per page. This search has taken 0.021s to perform.

Transcript Name Description Chr Start End Strand Domain predictions GO predictions
Lj0g3v0161679.1
n.a. PREDICTED: OTU domain-containing protein At3g57810-like [Cicer arietinum] gi|502122928|ref|XP_004497941.1| chr0 76078265 76083502 -
2 domain predictions
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Lj0g3v0277439.1
n.a. PREDICTED: OTU domain-containing protein 3-like [Glycine max] gi|356565555|ref|XP_003551005.1| chr0 143985154 143992292 -
2 domain predictions
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Lj0g3v0277809.1
n.a. PREDICTED: OTU domain-containing protein DDB_G0284757-like isoform X4 [Cicer arietinum] gi|502092677|ref|XP_004489740.1| chr0 144221976 144232980 -
2 domain predictions
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Lj0g3v0301719.1
n.a. PREDICTED: OTU domain-containing protein 5-like isoform X4 [Cicer arietinum] gi|502083515|ref|XP_004487483.1| chr0 156844375 156851154 +
2 domain predictions
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Lj1g3v4917470.1
n.a. PREDICTED: LOW QUALITY PROTEIN: OTU domain-containing protein 6B-like [Glycine max] gi|356505520|ref|XP_003521538.1| chr1 59608358 59612169 -
2 domain predictions
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Lj2g3v3163950.1
n.a. PREDICTED: ubiquitin thioesterase OTU1-like isoform X2 [Cicer arietinum] gi|502099137|ref|XP_004491398.1| chr2 40740924 40745722 -
2 domain predictions
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Lj3g3v1603940.1
n.a. PREDICTED: OTU domain-containing protein At3g57810-like [Glycine max] gi|356504295|ref|XP_003520932.1| chr3 20350216 20355373 +
2 domain predictions
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Lj3g3v2989270.2
n.a. PREDICTED: OTU domain-containing protein 5-like isoform X4 [Cicer arietinum] gi|502083515|ref|XP_004487483.1| chr3 36999683 37005273 -
2 domain predictions
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Lj3g3v2989270.3
n.a. PREDICTED: OTU domain-containing protein 5-like isoform X1 [Cicer arietinum] gi|502083504|ref|XP_004487480.1| chr3 36999683 37005273 -
2 domain predictions
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Lj5g3v0659450.1
n.a. Cysteine-type peptidase [Medicago truncatula] gi|357440359|ref|XP_003590457.1| chr5 9187528 9192883 -
2 domain predictions
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Lj5g3v1769400.1
n.a. PREDICTED: OTU domain-containing protein At3g57810-like [Glycine max] gi|356576317|ref|XP_003556279.1| chr5 25090815 25094342 +
2 domain predictions
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Lj5g3v1807010.1
n.a. PREDICTED: OTU domain-containing protein 1-like isoform X2 [Cicer arietinum] gi|502118402|ref|XP_004496249.1| chr5 25761170 25765852 -
2 domain predictions
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Lj6g3v0204690.1
n.a. PREDICTED: OTU domain-containing protein DDB_G0284757-like isoform X2 [Cicer arietinum] gi|502134310|ref|XP_004502073.1| chr6 2023142 2027895 +
2 domain predictions
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LotjaGi1g1v0029400.1
n.a. Ubiquitin thioesterase OTU1; TAIR: AT1G50670.1 OTU-like cysteine protease family protein; Swiss-Prot: sp|Q567B1|OTU1_DANRE Ubiquitin thioesterase OTU1; TrEMBL-Plants: tr|I3T4E6|I3T4E6_LOTJA Uncharacterized protein; Found in the gene: LotjaGi1g1v0029400 LjG1.1_chr1 3521936 3527212 +
2 domain predictions
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LotjaGi1g1v0029400.2
n.a. Ubiquitin thioesterase OTU1; TAIR: AT1G50670.1 OTU-like cysteine protease family protein; Swiss-Prot: sp|Q567B1|OTU1_DANRE Ubiquitin thioesterase OTU1; TrEMBL-Plants: tr|I3T4E6|I3T4E6_LOTJA Uncharacterized protein; Found in the gene: LotjaGi1g1v0029400 LjG1.1_chr1 3521994 3526990 +
2 domain predictions
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LotjaGi1g1v0029400.3
n.a. Ubiquitin thioesterase OTU1; TAIR: AT1G50670.1 OTU-like cysteine protease family protein; Swiss-Prot: sp|Q55BI3|OTU1_DICDI Ubiquitin thioesterase OTU1; TrEMBL-Plants: tr|I3T4E6|I3T4E6_LOTJA Uncharacterized protein; Found in the gene: LotjaGi1g1v0029400 LjG1.1_chr1 3522576 3525472 +
2 domain predictions
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LotjaGi1g1v0768400.1
n.a. OTU domain-containing protein, putative; TAIR: AT3G62940.2 Cysteine proteinases superfamily protein; Swiss-Prot: sp|Q7ZV00|OTU6B_DANRE OTU domain-containing protein 6B; TrEMBL-Plants: tr|K7MZG8|K7MZG8_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0768400 LjG1.1_chr1 134100601 134104583 -
2 domain predictions
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LotjaGi1g1v0768400.2
n.a. OTU domain-containing protein, putative; TAIR: AT3G62940.2 Cysteine proteinases superfamily protein; Swiss-Prot: sp|Q7ZV00|OTU6B_DANRE OTU domain-containing protein 6B; TrEMBL-Plants: tr|K7MZG8|K7MZG8_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0768400 LjG1.1_chr1 134100776 134104544 -
2 domain predictions
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LotjaGi1g1v0768400.3
n.a. OTU domain-containing protein, putative; TAIR: AT3G62940.1 Cysteine proteinases superfamily protein; Swiss-Prot: sp|Q7ZV00|OTU6B_DANRE OTU domain-containing protein 6B; TrEMBL-Plants: tr|V7D1I7|V7D1I7_PHAVU Uncharacterized protein; Found in the gene: LotjaGi1g1v0768400 LjG1.1_chr1 134101009 134102123 -
2 domain predictions
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LotjaGi1g1v0768400.4
n.a. OTU domain-containing protein, putative; TAIR: AT3G62940.2 Cysteine proteinases superfamily protein; Swiss-Prot: sp|Q7ZV00|OTU6B_DANRE OTU domain-containing protein 6B; TrEMBL-Plants: tr|K7MZG8|K7MZG8_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0768400 LjG1.1_chr1 134101009 134103388 -
2 domain predictions
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LotjaGi2g1v0105200.1
n.a. OTU domain-containing protein; TAIR: AT3G02070.1 Cysteine proteinases superfamily protein; Swiss-Prot: sp|Q54P70|Y4757_DICDI OTU domain-containing protein DDB_G0284757; TrEMBL-Plants: tr|I3S995|I3S995_LOTJA Uncharacterized protein; Found in the gene: LotjaGi2g1v0105200 LjG1.1_chr2 35540945 35553760 -
2 domain predictions
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LotjaGi2g1v0156500.1
n.a. OTU domain-containing protein; TAIR: AT3G57810.2 Cysteine proteinases superfamily protein; Swiss-Prot: sp|Q8LBZ4|OTU_ARATH OTU domain-containing protein At3g57810; TrEMBL-Plants: tr|A0A072VP60|A0A072VP60_MEDTR OTU-like cysteine protease; Found in the gene: LotjaGi2g1v0156500 LjG1.1_chr2 55569815 55574205 -
2 domain predictions
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LotjaGi3g1v0179500.1
n.a. OTU domain-containing protein; TAIR: AT2G27350.1 OTU-like cysteine protease family protein; Swiss-Prot: sp|Q3U2S4|OTUD5_MOUSE OTU domain-containing protein 5; TrEMBL-Plants: tr|G7IHG3|G7IHG3_MEDTR OTU-like cysteine protease; Found in the gene: LotjaGi3g1v0179500 LjG1.1_chr3 25007604 25014405 +
2 domain predictions
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LotjaGi3g1v0179500.2
n.a. OTU domain-containing protein; TAIR: AT2G27350.1 OTU-like cysteine protease family protein; Swiss-Prot: sp|Q3U2S4|OTUD5_MOUSE OTU domain-containing protein 5; TrEMBL-Plants: tr|G7IHG3|G7IHG3_MEDTR OTU-like cysteine protease; Found in the gene: LotjaGi3g1v0179500 LjG1.1_chr3 25007621 25014421 +
2 domain predictions
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LotjaGi3g1v0215900.1
n.a. OTU domain-containing protein; TAIR: AT2G38025.1 Cysteine proteinases superfamily protein; Swiss-Prot: sp|Q8LBZ4|OTU_ARATH OTU domain-containing protein At3g57810; TrEMBL-Plants: tr|I3TAS0|I3TAS0_LOTJA Uncharacterized protein; Found in the gene: LotjaGi3g1v0215900 LjG1.1_chr3 32416985 32422754 +
2 domain predictions
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LotjaGi3g1v0475100_LC.1
n.a. OTU domain-containing protein; TAIR: AT2G27350.1 OTU-like cysteine protease family protein; Swiss-Prot: sp|Q96G74|OTUD5_HUMAN OTU domain-containing protein 5; TrEMBL-Plants: tr|I1LRI6|I1LRI6_SOYBN Uncharacterized protein; Found in the gene: LotjaGi3g1v0475100_LC LjG1.1_chr3 89180656 89186629 -
2 domain predictions
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LotjaGi3g1v0475100_LC.3
n.a. OTU domain-containing protein; TAIR: AT2G27350.3 OTU-like cysteine protease family protein; Swiss-Prot: sp|Q08BW0|OTU5A_DANRE OTU domain-containing protein 5-A; TrEMBL-Plants: tr|A0A0B2S056|A0A0B2S056_GLYSO OTU domain-containing protein 5; Found in the gene: LotjaGi3g1v0475100_LC LjG1.1_chr3 89180656 89186629 -
2 domain predictions
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LotjaGi4g1v0102800.1
n.a. Protein translocase subunit SecA; TAIR: AT5G67170.1 SEC-C motif-containing protein / OTU-like cysteine protease family protein; Swiss-Prot: sp|B1AZ99|OTUD3_MOUSE OTU domain-containing protein 3; TrEMBL-Plants: tr|V7CF51|V7CF51_PHAVU Uncharacterized protein; Found in the gene: LotjaGi4g1v0102800 LjG1.1_chr4 14239276 14248370 -
2 domain predictions
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LotjaGi5g1v0081000.1
n.a. OTU domain-containing protein; TAIR: AT5G03330.1 Cysteine proteinases superfamily protein; Swiss-Prot: sp|Q54P70|Y4757_DICDI OTU domain-containing protein DDB_G0284757; TrEMBL-Plants: tr|A0A151TIX5|A0A151TIX5_CAJCA OTU domain-containing protein DDB-G0284757; Found in the gene: LotjaGi5g1v0081000 LjG1.1_chr5 13149723 13156661 +
2 domain predictions
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LotjaGi5g1v0145000.1
n.a. OTU domain-containing protein; TAIR: AT3G57810.2 Cysteine proteinases superfamily protein; Swiss-Prot: sp|Q8LBZ4|OTU_ARATH OTU domain-containing protein At3g57810; TrEMBL-Plants: tr|V7BM62|V7BM62_PHAVU Uncharacterized protein; Found in the gene: LotjaGi5g1v0145000 LjG1.1_chr5 36655090 36661224 -
2 domain predictions
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LotjaGi5g1v0271900.1
n.a. OTU domain-containing protein; TAIR: AT5G04250.1 Cysteine proteinases superfamily protein; Swiss-Prot: sp|Q54P70|Y4757_DICDI OTU domain-containing protein DDB_G0284757; TrEMBL-Plants: tr|I1NHH6|I1NHH6_SOYBN Uncharacterized protein; Found in the gene: LotjaGi5g1v0271900 LjG1.1_chr5 58550797 58556534 -
2 domain predictions
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LotjaGi6g1v0035100.1
n.a. OTU domain-containing; TAIR: AT3G22260.1 Cysteine proteinases superfamily protein; Swiss-Prot: sp|Q54P70|Y4757_DICDI OTU domain-containing protein DDB_G0284757; TrEMBL-Plants: tr|I3S3E1|I3S3E1_LOTJA Uncharacterized protein; Found in the gene: LotjaGi6g1v0035100 LjG1.1_chr6 6593504 6599109 +
2 domain predictions
 –