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| Field | Value |
|---|---|
| Gene ID | LotjaGi4g1v0103000 |
| Transcript ID | LotjaGi4g1v0103000.2 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | PI-PLC X domain-containing protein family; TAIR: AT5G67130.1 PLC-like phosphodiesterases superfamily protein; Swiss-Prot: sp|Q93XX5|Y5713_ARATH PI-PLC X domain-containing protein At5g67130; TrEMBL-Plants: tr|A0A072UQZ4|A0A072UQZ4_MEDTR Pi-PLC X domain plant-like protein; Found in the gene: LotjaGi4g1v0103000 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:14293414..14295472) extracted from Lotus japonicus Gifu genome v1.2.
CTGCCATGTGCTCGCAATGCAGAGCAGCATCACCTGCACAAATCGTTCTTCTCCTTCTCCCACTCATCATCTCTTCCATC TTCTTCACCTCCTCCACCGCATGCTCTAACGGCAATTGCCAGGTTCTCTCTTTCCCCTTTCCTGAGAAAAAAGATCCATG GAAGTTCACTCTCGTTCTCTGAAATTCAGCTGAATTTGGCAGGTTTCGGAAGCATGTTTAACCGCTACGGATTGTGGGCA AGGTCTCTACTGCGGTAATTGTCCTGCTTTGGGCTTGAACCGACCCATCTGCACCAGAGGCCAACCCTCGCTTCCCACAT CCATAGTAATCTCCATTTCATTGATGGCAACTTTCTCTCAATTTTGCAGCTAAAGAAAACTAGAAAAGGGTGTCAAAATC TCTTTTTTATGGAACTTTCCCTTTTGGGTCATTTTGCAGGTCAATGGGTTGCCCTTCAACAAGTACTCATGGATAGTCAC CCACAATTCGTTCAGCATCGTGGATTCGCCGCCTTACCCGGGTGTTCAGAGATTGACATTTTACAATCAAGAAGATGCTG TGGCTAACCAGTTGAGGGTATGTGTAATCTGTTTGCAGTTGCTTGTTAATTTTGCTTGCTTTTTATGGATGAAGTTGGTT TCTGATTCAGCTTGGCAATGTTTTTTCGGGTTAGAATATAATATAAAACTGTTCACGTGACCCTTACCCAACAACTTAAG CTTTTGGGATATTTAGTTATCCGACATGGTATCAGAGCCTCTATGACCAAACGGTCCAGAGTTCGATCCGCCGTCCCCAA TTATTCTATTAAAAAGTTGAATTAAAAGCACATGGTAGGTGGGCCTGTGCATTGCCCATGCCCCAACAGCTTAAGCTTTT GAGATATTTGGTTACTTGACATTTCCCCTTGTTTCTAGGTTTTGGTTGTTTGATTACTTTTTGTGCTGTTTCTTATGTAT TTGTTTTTGATGATTTAGAATGGAGTGAGGGGGCTGATGTTGGATATGTACGACTTCCAGAATGATATTTGGCTCTGTCA TTCATTTAAAGGGGAATGCTTCAACTTCACTGCCTTTGTAATTTAACCATCTTTGTATTATTGATTTTACAATCTCATTG TGCTTTGTTATGGTTGCACTTGCTTGAGGCATTGTCTAATGTGTTAACTGAACTGTTCTCAGCAACCTGCTATAAATACT TTGAAAGAAGTGGAAGCATTCTTGACGGGAAATCCAACTGAGATTGTCACCATCATAATTGAAGACTATGTGCATACTCC AAAGGGGTTGACTAATCTGTTCAAAAGTGCTGGACTGGATAAGTATTGGTTTCCAGTGTCCAAGATGCCTAAAAAGGGTG ACGACTGGCCCACTGTAACAGAGATGGTTCAAGCGAATCATCGGCTTGTTGTTTTCACTTCGGATGCCTCAAAGGAAGCT GAAGAAGGAATAGCTTATCAGTGGAAGCACATGGTTGAAAATGAGTGTGAGCACAGTATTATTTTAACATGCTTTTCTCC TTTATTCATGATTTGTGATGACAACCTCGCAATTCACTTGCTTTCAGCTGGAGATCCTGGAGTTCGGCGAGGTTCTTGCC CGCATAGGAAAGAATCAAAGGCATTGAATTCTAGAAGTGCGTCGCTTTTCTTAATGAATTACTTTCCAACATATCCAGTT CAAGCTGATTCGTGCAAAGAGCATTCCGCTCCACTTGCTGAGATGGTGAATACATGCTACAAAGCTGCAGGGAATGTGTT GCCCAACTTCATAGCTGTTAACTTTTACATGGTATTCCATATTGTTCACTAATGTTAGCTGAAACTTAGTTATTGATATG CATACAGCACATACCTTGTAGCATTCTGATTGAAATTTCATGCAGAGGAGTGATGGAGGTGGTGTTTTTGATATTGTGGA TAAAATGAATGGCCAAGAATTGTGTGGGTGTAGTACAATCACAGCCTGCCAGGTTTGTCTCCATTTCTTGTTCTGATATG TTTTTTCTTCATGCCATTGTTTAGGAACCTTCTGTTTTCTGACTGTCTTGTATTCCTAA
CDS sequence (LotjaGi4g1v0103000.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGTGCTCGCAATGCAGAGCAGCATCACCTGCACAAATCGTTCTTCTCCTTCTCCCACTCATCATCTCTTCCATCTTCTT CACCTCCTCCACCGCATGCTCTAACGGCAATTGCCAGGTTTCGGAAGCATGTTTAACCGCTACGGATTGTGGGCAAGGTC TCTACTGCGGTAATTGTCCTGCTTTGGGCTTGAACCGACCCATCTGCACCAGAGGCCAACCCTCGCTTCCCACATCCATA GTCAATGGGTTGCCCTTCAACAAGTACTCATGGATAGTCACCCACAATTCGTTCAGCATCGTGGATTCGCCGCCTTACCC GGGTGTTCAGAGATTGACATTTTACAATCAAGAAGATGCTGTGGCTAACCAGTTGAGGAATGGAGTGAGGGGGCTGATGT TGGATATGTACGACTTCCAGAATGATATTTGGCTCTGTCATTCATTTAAAGGGGAATGCTTCAACTTCACTGCCTTTCAA CCTGCTATAAATACTTTGAAAGAAGTGGAAGCATTCTTGACGGGAAATCCAACTGAGATTGTCACCATCATAATTGAAGA CTATGTGCATACTCCAAAGGGGTTGACTAATCTGTTCAAAAGTGCTGGACTGGATAAGTATTGGTTTCCAGTGTCCAAGA TGCCTAAAAAGGGTGACGACTGGCCCACTGTAACAGAGATGGTTCAAGCGAATCATCGGCTTGTTGTTTTCACTTCGGAT GCCTCAAAGGAAGCTGAAGAAGGAATAGCTTATCAGTGGAAGCACATGGTTGAAAATGAGTCTGGAGATCCTGGAGTTCG GCGAGGTTCTTGCCCGCATAGGAAAGAATCAAAGGCATTGAATTCTAGAAGTGCGTCGCTTTTCTTAATGAATTACTTTC CAACATATCCAGTTCAAGCTGATTCGTGCAAAGAGCATTCCGCTCCACTTGCTGAGATGGTGAATACATGCTACAAAGCT GCAGGGAATGTGTTGCCCAACTTCATAGCTGTTAACTTTTACATGAGGAGTGATGGAGGTGGTGTTTTTGATATTGTGGA TAAAATGAATGGCCAAGAATTGTGTGGGTGTAGTACAATCACAGCCTGCCAGGAACCTTCTGTTTTCTGA
Protein sequence (LotjaGi4g1v0103000.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MCSQCRAASPAQIVLLLLPLIISSIFFTSSTACSNGNCQVSEACLTATDCGQGLYCGNCPALGLNRPICTRGQPSLPTSI VNGLPFNKYSWIVTHNSFSIVDSPPYPGVQRLTFYNQEDAVANQLRNGVRGLMLDMYDFQNDIWLCHSFKGECFNFTAFQ PAINTLKEVEAFLTGNPTEIVTIIIEDYVHTPKGLTNLFKSAGLDKYWFPVSKMPKKGDDWPTVTEMVQANHRLVVFTSD ASKEAEEGIAYQWKHMVENESGDPGVRRGSCPHRKESKALNSRSASLFLMNYFPTYPVQADSCKEHSAPLAEMVNTCYKA AGNVLPNFIAVNFYMRSDGGGVFDIVDKMNGQELCGCSTITACQEPSVF
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| SignalP_EUK | 1 | 32 | 32 | - | – | |
| ProSiteProfiles | 1 | 33 | 33 | 5.0 | – | |
| Phobius | 1 | 34 | 34 | - | – | |
| SignalP_GRAM_POSITIVE | 1 | 34 | 34 | - | – | |
| Phobius | 1 | 10 | 10 | - | – | |
| PANTHER | 4 | 365 | 362 | 2.5E-245 | – | |
| PANTHER | 4 | 365 | 362 | 2.5E-245 | – | |
| Phobius | 11 | 22 | 12 | - | – | |
| TMHMM | 13 | 32 | 20 | - | – | |
| Phobius | 23 | 34 | 12 | - | – | |
| Phobius | 35 | 369 | 335 | - | – | |
| CDD | 77 | 350 | 274 | 1.64506E-104 | – | |
| Gene3D | 78 | 292 | 215 | 7.8E-9 | ||
| SUPERFAMILY | 79 | 354 | 276 | 2.67E-44 | ||
| ProSiteProfiles | 85 | 193 | 109 | 10.36 | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Biological process | Lipid metabolic process | The chemical reactions and pathways involving lipids, compounds soluble in an organic solvent but not, or sparingly, in an aqueous solvent. Includes fatty acids; neutral fats, other fatty-acid esters, and soaps; long-chain (fatty) alcohols and waxes; sphingoids and other long-chain bases; glycolipids, phospholipids and sphingolipids; and carotenes, polyprenols, sterols, terpenes and other isoprenoids. | ||
| Molecular function | Phosphoric diester hydrolase activity | Catalysis of the hydrolysis of a phosphodiester to give a phosphomonoester and a free hydroxyl group. |
Expression pattern of LotjaGi4g1v0103000.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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