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Field | Value |
---|---|
Gene ID | LotjaGi4g1v0105200 |
Transcript ID | LotjaGi4g1v0105200.1 |
Lotus japonicus genome version | Gifu v1.2 |
Description | Heat shock transcription factor; TAIR: AT4G36990.1 heat shock factor 4; Swiss-Prot: sp|P22335|HSF24_SOLPE Heat shock factor protein HSF24; TrEMBL-Plants: tr|A0A0L9TIM3|A0A0L9TIM3_PHAAN Uncharacterized protein; Found in the gene: LotjaGi4g1v0105200 |
Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:14646159..14649860) extracted from Lotus japonicus Gifu genome v1.2.
GCTGGTTCCACTATTTTCTTTTGTTTCGTTAATTTGGTCATACGTGATTGTGATTCATTTTAGACTTTTGAGTTTGGAGT GCGTCTCAATATTTCTAGAAGGAAATCAATTAACCCACGTCACATGCGTGGGATTTGGCTTCCTTTGTTTTATAAATTAA AAAGAGTCCCAAGCAAGGCAATTAAGAATCCTCAAACTCAAACATCATCACACCCTATTCAACTTTCTTTCATTCTCTTT CTCTCTATACCTCATCAGAGAAGAACAAGAAGTTATGATTTTTGTCACACCAATTCATGTCCAAGATATCCATGGATAAT TCTGATCACAGAAACCCTTCTTTCCCTACCTTGATTCACTCTCGCTTCTTCCTCTTTGGTTTCTATTGCTGGGATTGGGA ATTCTTAACCGCTCTCCTCCTTTTCAGTTCTTCTTCCTAGCTCCTAAGCTTATAGTTAACATACATAGTTACATTTTTTA TTATTTTTCCTTATTAATACATCAAGGTAGCTTACAAGAGAAAAAAAAAAAAGTACAGATTTTTTTATTTGTTTTTAAAA AAAAATAGTTAAAAAATTTGTAAGGTGGTAGGTGGAGGGGTAAATCGGTCAAGGAGAAATGTCGCAGCGGTCGACGCCGG CACCGTTTTTGGTGAAGACGTATCAGCTGGTGGAGGATCCTGCCACGGACGACGTGGTTTCATGGAGTGAAAGTGGTGGC ACGTTTGTGGTGTGGAAACATGCGGATTTTGCTAGGGACTTGCTTCCCAAGTATTTCAAGCACAACAACTTCTCCAGCTT TGTTCGCCAGCTCAATACTTACGTAAGTGTCCCTTGTTCTTTCTCTTCTTCAGTTTTGCTTGTGTTGGTTTCTGTAATTA TGTCCTTTAATTGTTGTGACTTGTTTGTTCATGATAAGCTTATCAACCTGTGATTCATTTATTTTTTGAAAAGTTCAGTT CATGATGGTTGCTTTTCGGCCAAATATAGATTCAACTTATATTCAATGTAGAAATTGGTATTGCTTACTTTACCTTATGA TTCGTAAATCATCTTGATTGGGGGAGTAGAATATTGTGGAATTTTTAATTTAGGAGTCGTCTTGGGAATATGAAATAAAT AAATAAATAAAATTGGTTATATAATGTAGGATTGGTTGCTTGGAAATTGTCTATTGTTTGTTGAAGTCTTTGTTTACACG GTGTTTGTAAGTGATTTTCACACCATACACTCTGCTTCTAGGAAATTTACTCCCCATGTGGTTCGTAGAATGAAATGTAA AATTTGAAAGAAATTCATGTACATGCTAAAAAGCACGTGTTGCTTAATGCTAGATATCTTTGGTTAGGTGGCCGCATTGG AAGAATTTCTGTTCTCGTGGGGAAGTCTAAAGTGGTTTTTGTGATAGTTTAATTTTAAAAGAAATAATGTAAAATATGAA AAGTATCTTTATTTCAAAATAAGAAATTATTTTAAAATTAGATTAACATTATTTATATTATCTATAAAAGCAAAAGACTT TTTTTTAACTAACAAAGAAAAAGATTTAATAATGCATTGTTTGATTCCAAGACAAGGCTTTGATTTATGTATCACATTTT CATCTAGACATATACCATTTGTGATAGTTTTTTACCGTCATAAATTAGTAAGTATGTGTCTGCCATGCATAAAATTAATA TTGGGATAATTGTGACATGGGTTTGAATTTAGTTCTTTGTGATGCTATTAATTAAATTGTTATGTCATTTGATAAATGAG TTTGACTATAGTAATAAATATTTTGAAAGGTCAAATAAAAGAAAATGATATGGCACGAAGTGTGGTTGGTGGATAATTTT CTAGTTTAGTTTGATGGGTATGTAGTTGCCTACTTGCCTTGTATGAATGTGAATGTGAAGCTGAATGGTGGCTGTGGTAG TTGCGCCACCACTCTGCCGACGGATACGAACATGCTTAGGCTATTGGGCTCGTGGTAGATGGGCCCGATGTTTTTTATTT GTCTAATTTTTTTAACAATTTCTATTGTAATATGTCACGATTGCATTATTTTGTTACTGATGATCTTTGTCGATTCCGTA CGAAATTAATGAATGCTCTTAGGGATATTAATTAATGAATATTTTATATATTTTGTGAAATTATTTCTATTAATAAAATG TAATATTTTTCAGTTTATAGATATTTATTCATTAACCATTTTTTATTTGTGCTTCATTGATGACATGTCTCTTCTTGAAG AAATTGTTTCTGATATTTCTACAAAAGAAAACTACTTTCTAACTACCCCACAAAGAAAAAAGATTGTCAAAGTTATGTTC TCCTTTTCGGTTGATTAAAAAATTATAGACCTTATAATTGATAAGAAGGATAAGTCTATGGGAGTTTATTTTTAAAATAA GTCATCATTCTATAGTTAATTTACATTAAATTTTATTTTTATGTGTTAAATATTAATCGCTAAGTTTAAAAAAATAGGAA AAACTCATGTATTATTTAAAAAAGAGTTTAATTTCTATGCACCGACGGTGTAAAATTTTTTTACCCGTCAATCAATCAGA TTTCAAGGATGTGAGAAAATTTCTCATTTTATTTAATTTCATTAATTGACGTGGTACATCCTTGAAATCTGATTGGTTGA CGGTTTAAAAAAACTTTACACCGTCGATGCATCAAACTTTTTCTCTTTAAAAAATGTAAATTAGCATTATTTATTAAGTA AATAAAATCTGTAGATTTTTTTTTACTATTGGTTTATTAATTAATATTCAATTTCAATTATACAGGGGTTTCGAAAGATC GTTCCTGACAAATGGGAATTCGCGAACGAGTGCTTCAAGCAAGGCCAAAAGGAGCTGCTAGTGGAAATCAAGCGGCGGAA GACGGTGTCAGTAACCGGCAAACCTGGTGGCGCAAACTCGGCGTCAAACTCTGGCGGCGATGACTTGGGTTCAACGTCGA CGGGATCAGTGGACGCAGCGGCGGTGCCAACTGATTTATCATGCGAGAACGAGAAATTGAAGATAGACAACGAGAAATTG AGCTGCGAGCTGGAGCAAGCAAAAAAGCAATGCGACGAGCTCGTGGCGTTTCTGAGGGAGACACTCGATGTGGGGCCCGA TCAGATAAACTGCATGATTCGGCAAGGAACTAATGGGTCCAGCAACGATGTGGTGGTAGATGAGTGTAGTGGGGAGAATT TGAAATTGTTTGGTGTATGGCTGAATGGAGAAAAGGGAGAGAAAGTGATTGCCACACCCACCATTACCAAGGGTAACTGC CGCAAGAGATCGAGGGCGTGAAGAACCTGTTGGTGGTCGTGCTAAAGAGATTAAGACTGTTGTCTAGGACTGGTGTCGAG GTTGCTATACTATTTTTAAGAATGTTTAGTTCAGACTCTTGTCCATCATGATAAAAATGCATGATGATGGTTATGTAGTG TAAAATACATTTGTATGATCTGAATTTAATATGGATGTTGTATGTTATTGAATTTAATTGATAAACTTTAATAAGTATAG TTAATGATATGAATTAGAGTAAGTAATGATTGGTGAACATATCAATAGTGACAAACACTCAAATGCACATTCTTAAATTA GGATAATTTCAGTCTAATTTATCTACACACATTTTGTGATTTTGTCATGCAAGAGGCAATAGAGTATTAAGTGTGTTAAA TATAATATAGAATCATTCACAT
CDS sequence (LotjaGi4g1v0105200.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGTCGCAGCGGTCGACGCCGGCACCGTTTTTGGTGAAGACGTATCAGCTGGTGGAGGATCCTGCCACGGACGACGTGGT TTCATGGAGTGAAAGTGGTGGCACGTTTGTGGTGTGGAAACATGCGGATTTTGCTAGGGACTTGCTTCCCAAGTATTTCA AGCACAACAACTTCTCCAGCTTTGTTCGCCAGCTCAATACTTACGGGTTTCGAAAGATCGTTCCTGACAAATGGGAATTC GCGAACGAGTGCTTCAAGCAAGGCCAAAAGGAGCTGCTAGTGGAAATCAAGCGGCGGAAGACGGTGTCAGTAACCGGCAA ACCTGGTGGCGCAAACTCGGCGTCAAACTCTGGCGGCGATGACTTGGGTTCAACGTCGACGGGATCAGTGGACGCAGCGG CGGTGCCAACTGATTTATCATGCGAGAACGAGAAATTGAAGATAGACAACGAGAAATTGAGCTGCGAGCTGGAGCAAGCA AAAAAGCAATGCGACGAGCTCGTGGCGTTTCTGAGGGAGACACTCGATGTGGGGCCCGATCAGATAAACTGCATGATTCG GCAAGGAACTAATGGGTCCAGCAACGATGTGGTGGTAGATGAGTGTAGTGGGGAGAATTTGAAATTGTTTGGTGTATGGC TGAATGGAGAAAAGGGAGAGAAAGTGATTGCCACACCCACCATTACCAAGGGTAACTGCCGCAAGAGATCGAGGGCGTGA
Protein sequence (LotjaGi4g1v0105200.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MSQRSTPAPFLVKTYQLVEDPATDDVVSWSESGGTFVVWKHADFARDLLPKYFKHNNFSSFVRQLNTYGFRKIVPDKWEF ANECFKQGQKELLVEIKRRKTVSVTGKPGGANSASNSGGDDLGSTSTGSVDAAAVPTDLSCENEKLKIDNEKLSCELEQA KKQCDELVAFLRETLDVGPDQINCMIRQGTNGSSNDVVVDECSGENLKLFGVWLNGEKGEKVIATPTITKGNCRKRSRA
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
---|---|---|---|---|---|---|
Gene3D | 2 | 101 | 100 | 1.5E-38 | ||
PANTHER | 3 | 216 | 214 | 1.8E-93 | – | |
PANTHER | 3 | 216 | 214 | 1.8E-93 | ||
SUPERFAMILY | 6 | 99 | 94 | 1.45E-34 | ||
SMART | 6 | 99 | 94 | 1.9E-61 | ||
Pfam | 10 | 99 | 90 | 1.2E-29 | ||
PRINTS | 10 | 33 | 24 | 1.1E-21 | ||
PRINTS | 48 | 60 | 13 | 1.1E-21 | ||
ProSitePatterns | 49 | 73 | 25 | - | ||
PRINTS | 61 | 73 | 13 | 1.1E-21 | ||
MobiDBLite | 104 | 129 | 26 | - | – | |
MobiDBLite | 106 | 129 | 24 | - | – | |
Coils | 143 | 170 | 28 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
GO term | Namespace | Name | Definition | Relationships |
---|---|---|---|---|
Molecular function | DNA-binding transcription factor activity | A protein or a member of a complex that interacts selectively and non-covalently with a specific DNA sequence (sometimes referred to as a motif) within the regulatory region of a gene to modulate transcription. Regulatory regions include promoters (proximal and distal) and enhancers. Genes are transcriptional units, and include bacterial operons. | ||
Biological process | Regulation of transcription, DNA-templated | Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription. | ||
Cellular component | Host cell nucleus | A membrane-bounded organelle as it is found in the host cell in which chromosomes are housed and replicated. The host is defined as the larger of the organisms involved in a symbiotic interaction. | ||
Molecular function | Sequence-specific DNA binding | Interacting selectively and non-covalently with DNA of a specific nucleotide composition, e.g. GC-rich DNA binding, or with a specific sequence motif or type of DNA e.g. promotor binding or rDNA binding. |
Expression pattern of LotjaGi4g1v0105200.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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