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| Field | Value |
|---|---|
| Gene ID | LotjaGi4g1v0106200 |
| Transcript ID | LotjaGi4g1v0106200.1 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Pentatricopeptide repeat-containing protein, putative; TAIR: AT5G39350.1 Tetratricopeptide repeat (TPR)-like superfamily protein; Swiss-Prot: sp|Q9FLZ9|PP405_ARATH Pentatricopeptide repeat-containing protein At5g39350; TrEMBL-Plants: tr|V7CCQ4|V7CCQ4_PHAVU Uncharacterized protein; Found in the gene: LotjaGi4g1v0106200 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:14762128..14765907) extracted from Lotus japonicus Gifu genome v1.2.
TATTCACGAACGCTCCTCCCTCTCTGCGTGAATGGACTCGTCGACGCCGGTGAATTGCGAAGCTTTGGACGCCGTCGTCA GCGAAGATTCCTCCGCCGCTCTCTCTCCATCTTCTTCCCGATCTCCTCCGCTTCCACGCTCCTTCCATTCTTCTGTTTTG TTGCTCTAACTACCATTACCAACACACCAAACCCCATGCACCTGAACTCTCTGCTGCAAGCATGCTCTGCTTCCAAATCT CTCAACCAAGCAAAGCAACTTCACCACTACATGCTTCTCCACGGCTCACACCGCAAACCCTTCTTCACCACCAAGCTCAT CCAAATCTACGCCGACTGCGACGACCTTCGCTCTGCCCATTCCTTGTTCCGCCAACTCCCCCAACCCAACGTCTTCGCTT TCACCTCCATCCTCGCCTTTCACTCCAGGCACGGCCTCGCACGCCAATGCATCGAAACGTACGCTGAAATGAGGTTCAAG GGTGTTTCGCCAGATGGGTATGTCTTCCCCAAGGTGCTCAAAGCGTGTGCTCAATTAGCAGCATTATTGGAAGTGGGTGT TGTGGTGCACAAAGATGTTGTGGTTTTCAGGTGGGATGTTGACTTGCGAGTTTGTAATTCTGTGTTGGATATGTATTCAA AGTGTGGGGATGTTGAGGGTGCAGCTCGGGTGTTCGATGAAATGCGTGAGAGGGATGTGTTTTCGTGGAATTCCATGATG TCGTGTTATGTGTGTAATGGGCTGTCTCAGAGGGCTGTGGAGGTGTTGGAGTCTATGAGGGTGGATGGGTGTGAGCCTGA TGTTGTCACTCGGAACACGGTGATGGATGCTTATTGCAGGATGGGGCTAGTTAGTGAGGCCTCGAAGGTTTTTGAACAGA TTAAGGATCCTAATGTTATTTCTTGGACGACGTTGATCTCAGGTTACTCCAGTGTTGGTAGGCATGGTGTTTCTTTGGGA ATTTTCAGGGAAATGGTAAATGATGGTATGGTTTTCCCTGATGCGGGTGCTCTTTCTGGTGTCCTTGTTTCATGCCGGTG CTTGGGGGCTTTGGCCAGTGGGAAGGAAATACATGGTTATGGTCTGAAAATCATGCCTGGGGAAATTTTTTACAGGTCTG CTGGTGCTGCCTTGTTGACATTGTATGCCCGTTGCCGTAGACTTCATGATGCTGAAAATGTGTTTCACAGAATGGATAAA TCTGATGTTGTTACATGGAATGCCATGATTTTTGGTTTCATTGACACAGGGCTGGGGCATTTGGCTGTTGAATGTTTTGG AGAAATGCAAGAAAGAGGAGTAAAGATTGATCATACCACTATATCTACCATATTGCCTGTTTGTGATTTGAGATGCGGAA AACAGATACATGCATATGTTAGTAAAACTGATTTCAATTGTAGTATGATTCCAGTTTACAATGCATTAATTCACATGTAC TCAATCTGTGGATGCATTGCATATGCATATTCTGTGTTTTCCACCATGGTTGAGAGGGACTTGGTTACATGGAACACGAT TATTGGAGGGTTTGGAATGCATGGACTTGGCCAAACTGCTTTGAAGCTTTTGCGAGAAATGAGTGATTCAGGCATTAACC CTGATTTAGTGACTTTTTCTTCAGCACTTTCGGCTTGTAGCCATTCAGGACTTGTGGATGATGGGATTGAACTCTTCTAC AGAATGACAAAAGATTTTTGCTTAACCCCAGTAAAGGAACACTATTCATGTGTTGTTGACATGTTGGGTCGGGCAGGTAG GCTTGAAGATGCTTTTCATTTCATTAACCAAATGCCCTTGGAACCAGATAAACATATTTGGGGAGCTTTACTCTCTGCTT GCCAAGAGAACCAAAATATTAGTGTTGGTAAGCTGGCGGCAGAAAAATTGATCAGTTTGGAACCTCTTGAAGCTAGTCAT TATGTGACACTGTCAAATCTATACTCAAGAGCCGGAAGATGGGATGATGCTGCAAGAATAAGGGTGATGATGGAAGGCCA AGGATTGTTGAAGCCATCTGCACATAGTTGGATTGGTACTGGAAGTTAACTTAGTGGTGAAAGACAGCATAATCACATCA ATATTTTGCTCCTGCTTTAAGTTCAAAGTGTTACCATGTATTGTCAAAATGCAACTATTATTGAATTGCCTTGGGATGCG ATGGACAATGATCATTGACAGCAATGGAAACAAACTATGATACTTACTAAAGACACTCAACAAGTGTTTGTTTCAAGAAC ATCGAGGAGCTAAATAACGCTTACTACGACAGAATGGAGGTGAGACAATAGAAGGTAACCAAATAAATTGTTATGTCTGG TGAAAGTTGAGAGCTGCAATTGTGACTAATTTTTTACAGCTTTTTTTAAGTGTGGTTATGCCGTTGTGTGGTAAAATGGC ATTCATATTTGAGGAGGGATCAAATTACTCCAAGAGTAACTGTTTTCGTAGTTACTCCTCTTCATTTTTTACAGTATTTT ACCGTTAGCTATGACATCTATATATATACACACATACATGGAGAAAGAAGAATAGTTCACTCCAATATGTGTGTGAGCAT GCACATATGATGACTCCAAGATATTAAAGTTATGTATAGGCCTTACTACATAATTGCTCTATCAGTCTAGTTTCGTCTAG TTTTGCAAGGTTTTGGGCTTGTTCTTACATTGATTGTGTTTAAGTCGTTTCTAATTGTTCCTTAGCCTTAACTTGGTGAA TTTTGGGTGTAATTTTTGAAGTTTTAATTCCCTAGCTACCTTACATATTCTAATTATCTGTTTTTATAGGTGCTACGATG GCAAAGGACATAGGAGAAGCTAGAGAAGAAGCAGATCAATTAGAACAAATTGAGAAGAGAGGAATCCAAGAATTCAACCA AGCAGGTTAGATCAGAATACAAGCAAGTGCATGTATGAAATCATTTTCCAAATTAAAAAATTAATTTAATATCATCTTGT AGCATTATGGCAGGTTTGCGCTTGAGGTGGTGGGGTTCTGGCTGTATCAAGATAGTGTTTAACCTGCTACTCTATTCCTG CAATTTTGGCAGGGAGTGGTCTGTATCAGCTTTGGTTTGAGACTGTGCGGCTTGTTTTGGTGAGTGAGCATGGTTGTGTG GTGTGAACAAGGTGGGTGTGGCGGGTAGGGAGCAATAATATGAATTTTGGGTGTGTTCGTTACAGTGTGGTGAGGTCTGG CCGTGTTGTCTATTATAAATCTCAGCTGTGTCTTATCAGGGATTCTTGAGACTCAATTGCTTATGTTGCTTCAGGTTTGT AGGCCAAGGGAAGAGAAGGGATGTCAAGCCTTTTCTTGTCTGATATGGTGGCATAATGTATGAATGGAGGGCTGTATATG GTTTTGTAAACCACATGTGCTGTAGATGAACAATCCTAGGCCAATGTAAGTTGAGTTAGCAGATTAGGTGGTTTACCGTG AAACATCGACTTCTATGCTGGATAGTTCACTCCATGTACATATCTAATATTTGCAATGTGGTCTGGTTTGTGATGCAGGT GATAGTGTAATGAAAGGGGCATGAATATATTTCTACACACCACATTGGATAAAAAGTATATCACATTGGACGTAGATGTG ACTACTAAATGACATCACATCTTTCACTTAAAATCTTATTCTTTTATTATTTACTTTTAACTCAATTGAATTCTCAAGAG GTAACAATCAGATTTTGTTGCTATAAGAGTTCACAATAGCTTGTTACATTGTGTTTGAGACAGTTTCTGACATAAACATT TATGCAAGCGTTTGAGTAAG
CDS sequence (LotjaGi4g1v0106200.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGCACCTGAACTCTCTGCTGCAAGCATGCTCTGCTTCCAAATCTCTCAACCAAGCAAAGCAACTTCACCACTACATGCT TCTCCACGGCTCACACCGCAAACCCTTCTTCACCACCAAGCTCATCCAAATCTACGCCGACTGCGACGACCTTCGCTCTG CCCATTCCTTGTTCCGCCAACTCCCCCAACCCAACGTCTTCGCTTTCACCTCCATCCTCGCCTTTCACTCCAGGCACGGC CTCGCACGCCAATGCATCGAAACGTACGCTGAAATGAGGTTCAAGGGTGTTTCGCCAGATGGGTATGTCTTCCCCAAGGT GCTCAAAGCGTGTGCTCAATTAGCAGCATTATTGGAAGTGGGTGTTGTGGTGCACAAAGATGTTGTGGTTTTCAGGTGGG ATGTTGACTTGCGAGTTTGTAATTCTGTGTTGGATATGTATTCAAAGTGTGGGGATGTTGAGGGTGCAGCTCGGGTGTTC GATGAAATGCGTGAGAGGGATGTGTTTTCGTGGAATTCCATGATGTCGTGTTATGTGTGTAATGGGCTGTCTCAGAGGGC TGTGGAGGTGTTGGAGTCTATGAGGGTGGATGGGTGTGAGCCTGATGTTGTCACTCGGAACACGGTGATGGATGCTTATT GCAGGATGGGGCTAGTTAGTGAGGCCTCGAAGGTTTTTGAACAGATTAAGGATCCTAATGTTATTTCTTGGACGACGTTG ATCTCAGGTTACTCCAGTGTTGGTAGGCATGGTGTTTCTTTGGGAATTTTCAGGGAAATGGTAAATGATGGTATGGTTTT CCCTGATGCGGGTGCTCTTTCTGGTGTCCTTGTTTCATGCCGGTGCTTGGGGGCTTTGGCCAGTGGGAAGGAAATACATG GTTATGGTCTGAAAATCATGCCTGGGGAAATTTTTTACAGGTCTGCTGGTGCTGCCTTGTTGACATTGTATGCCCGTTGC CGTAGACTTCATGATGCTGAAAATGTGTTTCACAGAATGGATAAATCTGATGTTGTTACATGGAATGCCATGATTTTTGG TTTCATTGACACAGGGCTGGGGCATTTGGCTGTTGAATGTTTTGGAGAAATGCAAGAAAGAGGAGTAAAGATTGATCATA CCACTATATCTACCATATTGCCTGTTTGTGATTTGAGATGCGGAAAACAGATACATGCATATGTTAGTAAAACTGATTTC AATTGTAGTATGATTCCAGTTTACAATGCATTAATTCACATGTACTCAATCTGTGGATGCATTGCATATGCATATTCTGT GTTTTCCACCATGGTTGAGAGGGACTTGGTTACATGGAACACGATTATTGGAGGGTTTGGAATGCATGGACTTGGCCAAA CTGCTTTGAAGCTTTTGCGAGAAATGAGTGATTCAGGCATTAACCCTGATTTAGTGACTTTTTCTTCAGCACTTTCGGCT TGTAGCCATTCAGGACTTGTGGATGATGGGATTGAACTCTTCTACAGAATGACAAAAGATTTTTGCTTAACCCCAGTAAA GGAACACTATTCATGTGTTGTTGACATGTTGGGTCGGGCAGGTAGGCTTGAAGATGCTTTTCATTTCATTAACCAAATGC CCTTGGAACCAGATAAACATATTTGGGGAGCTTTACTCTCTGCTTGCCAAGAGAACCAAAATATTAGTGTTGGTAAGCTG GCGGCAGAAAAATTGATCAGTTTGGAACCTCTTGAAGCTAGTCATTATGTGACACTGTCAAATCTATACTCAAGAGCCGG AAGATGGGATGATGCTGCAAGAATAAGGGTGATGATGGAAGGCCAAGGATTGTTGAAGCCATCTGCACATAGTTGGATTG GTACTGGAAGTTAA
Protein sequence (LotjaGi4g1v0106200.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MHLNSLLQACSASKSLNQAKQLHHYMLLHGSHRKPFFTTKLIQIYADCDDLRSAHSLFRQLPQPNVFAFTSILAFHSRHG LARQCIETYAEMRFKGVSPDGYVFPKVLKACAQLAALLEVGVVVHKDVVVFRWDVDLRVCNSVLDMYSKCGDVEGAARVF DEMRERDVFSWNSMMSCYVCNGLSQRAVEVLESMRVDGCEPDVVTRNTVMDAYCRMGLVSEASKVFEQIKDPNVISWTTL ISGYSSVGRHGVSLGIFREMVNDGMVFPDAGALSGVLVSCRCLGALASGKEIHGYGLKIMPGEIFYRSAGAALLTLYARC RRLHDAENVFHRMDKSDVVTWNAMIFGFIDTGLGHLAVECFGEMQERGVKIDHTTISTILPVCDLRCGKQIHAYVSKTDF NCSMIPVYNALIHMYSICGCIAYAYSVFSTMVERDLVTWNTIIGGFGMHGLGQTALKLLREMSDSGINPDLVTFSSALSA CSHSGLVDDGIELFYRMTKDFCLTPVKEHYSCVVDMLGRAGRLEDAFHFINQMPLEPDKHIWGALLSACQENQNISVGKL AAEKLISLEPLEASHYVTLSNLYSRAGRWDDAARIRVMMEGQGLLKPSAHSWIGTGS
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Gene3D | 1 | 119 | 119 | 1.3E-16 | ||
| ProSiteProfiles | 1 | 33 | 33 | 6.818 | ||
| PANTHER | 4 | 121 | 118 | 7.8E-123 | – | |
| ProSiteProfiles | 34 | 64 | 31 | 5.031 | ||
| ProSiteProfiles | 65 | 99 | 35 | 9.186 | ||
| Pfam | 68 | 97 | 30 | 1.3 | ||
| Gene3D | 120 | 300 | 181 | 5.4E-36 | ||
| PANTHER | 124 | 221 | 98 | 7.8E-123 | – | |
| ProSiteProfiles | 136 | 166 | 31 | 10.413 | ||
| TIGRFAM | 139 | 168 | 30 | 5.2E-7 | ||
| ProSiteProfiles | 167 | 201 | 35 | 11.926 | ||
| Pfam | 167 | 215 | 49 | 4.3E-12 | ||
| TIGRFAM | 169 | 203 | 35 | 6.4E-9 | ||
| ProSiteProfiles | 202 | 236 | 35 | 10.633 | ||
| TIGRFAM | 205 | 230 | 26 | 9.1E-5 | ||
| PANTHER | 206 | 292 | 87 | 7.8E-123 | – | |
| Pfam | 235 | 264 | 30 | 3.9E-5 | ||
| TIGRFAM | 235 | 269 | 35 | 2.7E-5 | ||
| ProSiteProfiles | 237 | 267 | 31 | 6.785 | ||
| PANTHER | 286 | 383 | 98 | 7.8E-123 | – | |
| Gene3D | 301 | 394 | 94 | 1.0E-16 | ||
| ProSiteProfiles | 306 | 336 | 31 | 6.358 | ||
| ProSiteProfiles | 337 | 371 | 35 | 10.611 | ||
| Pfam | 337 | 380 | 44 | 5.5E-10 | ||
| TIGRFAM | 339 | 372 | 34 | 1.3E-5 | ||
| PANTHER | 375 | 599 | 225 | 7.8E-123 | – | |
| Gene3D | 395 | 502 | 108 | 2.8E-24 | ||
| ProSiteProfiles | 404 | 434 | 31 | 7.081 | ||
| Pfam | 435 | 482 | 48 | 3.9E-11 | ||
| ProSiteProfiles | 435 | 469 | 35 | 11.762 | ||
| TIGRFAM | 437 | 470 | 34 | 2.4E-7 | ||
| ProSiteProfiles | 470 | 504 | 35 | 8.955 | ||
| Gene3D | 503 | 614 | 112 | 1.7E-12 | ||
| ProSiteProfiles | 506 | 536 | 31 | 6.873 | ||
| Pfam | 509 | 533 | 25 | 0.069 | ||
| TIGRFAM | 510 | 533 | 24 | 0.0018 | ||
| ProSiteProfiles | 572 | 606 | 35 | 8.276 | ||
| Pfam | 575 | 603 | 29 | 0.32 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of LotjaGi4g1v0106200.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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