Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message

LotjaGi4g1v0113300.2

Overview

Field Value
Gene ID LotjaGi4g1v0113300
Transcript ID LotjaGi4g1v0113300.2
Related isoforms 1
Lotus japonicus genome version Gifu v1.2
Description Protein transport protein Sec61 subunit alpha; TAIR: AT2G34250.1 SecY protein transport family protein; Swiss-Prot: sp|Q54XK2|SC61A_DICDI Protein transport protein Sec61 subunit alpha; TrEMBL-Plants: tr|A0A1J7HEZ2|A0A1J7HEZ2_LUPAN Uncharacterized protein; Found in the gene: LotjaGi4g1v0113300
Working Lj name n.a.

Sequence information

Genomic sequence (LjG1.1_chr4:16341560..16344422) extracted from Lotus japonicus Gifu genome v1.2.

ATGGGAGGTGGATTTAGGGTGCTTCACTTGGTTAGACCGTTTCTCTCGTTTCTTCCTGAAGTTCAGACAGCTGACAGGAA AGTTCCATTCAGAGAGAAGGTCATATATACTGTGATCTCTCTTTTCATTTTCCTGGTCTGCAGTCAGCTCCCTCTGTATG GGATACACTCAACAACTGGTGCGGATCCATTCTATTGGATGCGTGTCATCCTTGCTTCCAACCGTGGAACTGTCATGGAG CTCGGGATCACTCCCATTGTGACTTCTGGACTTGTGATGCAGCTTTTAGCTGGATCAAAGATCATTGAAGTTGACAACAA TGTACGAGAGGATCGTGCCCTATTGTAAGTGTCTCTATTTGTACATCTTATATGCGTTCAAAGAGATCATATATGGTGTC ATCCCATGTCAATAATTTCAGCTGGTTTTACATGTGGTTATTTTTGGAGCATATCCTATGTGTTCAGATTGTACTGTATG ATTTATTGCTGTTGCATCTATCTGAGTTAGATACCGTAATCTGTTGCCGCTGAGACATGACAGCTGAGCATGCTCAATTG AATCAGTAATGAATCTGAGTTAATTAGGTTCTTGTTAGTTTTTTTTAGTGTATAAATAAACTTACAAACTCACTTCACTG AGGTGAAATTAGAATTACATTTTCCAGATTCTACTTTCCAATTTTTCTCGTTTCTGCTAGTAGTGGTTGTCCATGTGACA TACATTCCTCCATTTAAAGGTGTATAAAATAGAATTTATTTAGCATGCGCCATGTCGTATCTTACAGTTGTCAACATTTC TTTTTGTGGTTTGCAGTGCTTTAGGGCTCCATATTTTGTTATATAATGTATATTGAGATAATTTCTTTTTCTTTTGCAGG AATGGAGCACAGAAGCTTCTTGGTATATTGATAGCTGTTGGAGAGGCTGTTGCCTATGTTCTTTCGGGAATGTATGGTAG TGTGGGCCAACTTGGAGTAGGAAATGCCATTCTTATCATCCTCCAGCTGTGTTTTGCTGGTATAATTGTGATATGTTTGG ATGAGCTCCTTCAAAAGGGATATGGTCTAGGCTCTGGAATTTCCCTATTCATAGCTACCAATATCTGGTAGGCTTTTACT CTTTGCTAATGAGATACTTCCAGATTTAGTCTATGACATTTGTGCTCTTATATTGTCAAAGCAACTACGAACCAGGTTAT CTGAACCTTTTGTCAAAAACTTAGAAGGATTTTTCATGTTATTTTGCAGTGAAAACATTATATGGAAGGCATTTAGTCCC ACCACCATTAATAGTGGACGTGGAGCTGAATTTGAGGGGGCTGTTATTGCTCTGTTCCATTTGTTGATTACTAGATCAGA CAAGGTTCGTGCGCTTCGCGAGGCATTTTACCGGCAGAATCTTCCCAATGTGACAAATCTTCTTGCAACTGTCTTGATCT TCCTGATTGTGATATACTTCCAAGGTTTCCGTGTGGTCCTGCCTGTAAGGTCAAAGAATGCCCGTGGGCAGCAGGGTTCA TATCCAATTAAACTGTTCTATACCTCCAACATGCCCATTATTCTTCAGTCTGCCCTTGTTTCTAATCTCTACTTCATCTC CCAGGTAATAATAGTTTTATGATAGCTTGAACTTGGTGTGTTTGGGTTTTCTGTTTCAACAATCTAAAATTACGTGTATT GTTCAGCTGCTCCACCGTAAGTACAGTGGAAACTTCTTTGTCAATCTATTGGGAAAGTGGAAGGATTCTGAATATGGAGG TGGTCATTCTATCCCTGTTGGTGGAATTGCATACTATATCACTGCACCATCAAGGTAAGAGAAGCTCTTCCAATGTGGTA TTCTAATATGGTATAAAGCTTTGACCAATTATATAGTCTTTTTTCTAATTCGACAACTCTAAATTTTGCAGCTTAGCTGA TATGGCCGCCAATCCTTTCCATGCGTTGTTCTATCTGGTGTTTATGCTTTCAGCCTGTGCTTTGTTCTCTAAAACTTGGA TTGAAGTCTCTGGTTCATCTGCTAGAGATGTTGCCAAGCAGCTGAAGGTATACTTACCAGATTTTTTTGGCATACTCTGC TTCATTTTTCACTATTTATAACAAGTGCACCTGCTTGATAACCAGGGGATTTAAAAGTTTGAGCAATTGGAGCTCATTTC CCAATTGAGTGAATTGAAATGATTCAATTCTTAATAAAGTAAAATGTTAGCCAGGCTTGATTTTAGCTATCCTTAGAAGC CAGTAATACTTTGTTTACTGTTTTAAACAAGGTTAAGTTTCTAATTGACTATGAAACACTAGTATACTTTTGGGGCCGCT GGCTGATCCATTGGAGGCAGTTTATTCTTATAAACTATCATTGAACTTTTAGCAGTTCATAGATATTGGGATGAACTGGT ACAATATCATGGATGTGATATGCTTTGGCACCAAATTTGGAAGCATATGAATTGATTAGTTTAGAATATTAGTTCAGGAC TGGGGTCAATGGTTTGGGCAACTTGGATTCTGAAACTGAGTTTGTTGCTGGAAATACTGTTCTATTGCATGGAAATTCAT CTTTGAATTATAGTTCTTTTGAGTGTGCAGTACTTATTAATTACATGTCTTTTGAATTTGCAGGAGCAACAAATGGTAAT GCCTGGACACCGTGAGTCGAACTTGCAGAAAGAACTTAACCGATATATTCCCACCGCTGCAGCATTTGGAGGCATTTGTA TTGGTGCTCTGACAGTGTTGGCAGATTTTATGGGAGCTATTGGTTCAGGGACAGGGATATTGCTTGCGGTGACAATCATC TACCAGTACTTTGAGACATTTGAGAAGGAGAGAGCCAGCGAGCTTGGCTTCTTTGGTTTCTAA 

CDS sequence (LotjaGi4g1v0113300.2) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGGGAGGTGGATTTAGGGTGCTTCACTTGGTTAGACCGTTTCTCTCGTTTCTTCCTGAAGTTCAGACAGCTGACAGGAA AGTTCCATTCAGAGAGAAGGTCATATATACTGTGATCTCTCTTTTCATTTTCCTGGTCTGCAGTCAGCTCCCTCTGTATG GGATACACTCAACAACTGGTGCGGATCCATTCTATTGGATGCGTGTCATCCTTGCTTCCAACCGTGGAACTGTCATGGAG CTCGGGATCACTCCCATTGTGACTTCTGGACTTGTGATGCAGCTTTTAGCTGGATCAAAGATCATTGAAGTTGACAACAA TGTACGAGAGGATCGTGCCCTATTGAATGGAGCACAGAAGCTTCTTGGTATATTGATAGCTGTTGGAGAGGCTGTTGCCT ATGTTCTTTCGGGAATGTATGGTAGTGTGGGCCAACTTGGAGTAGGAAATGCCATTCTTATCATCCTCCAGCTGTGTTTT GCTGGTATAATTGTGATATGTTTGGATGAGCTCCTTCAAAAGGGATATGGTCTAGGCTCTGGAATTTCCCTATTCATAGC TACCAATATCTGTGAAAACATTATATGGAAGGCATTTAGTCCCACCACCATTAATAGTGGACGTGGAGCTGAATTTGAGG GGGCTGTTATTGCTCTGTTCCATTTGTTGATTACTAGATCAGACAAGGTTCGTGCGCTTCGCGAGGCATTTTACCGGCAG AATCTTCCCAATGTGACAAATCTTCTTGCAACTGTCTTGATCTTCCTGATTGTGATATACTTCCAAGGTTTCCGTGTGGT CCTGCCTGTAAGGTCAAAGAATGCCCGTGGGCAGCAGGGTTCATATCCAATTAAACTGTTCTATACCTCCAACATGCCCA TTATTCTTCAGTCTGCCCTTGTTTCTAATCTCTACTTCATCTCCCAGCTGCTCCACCGTAAGTACAGTGGAAACTTCTTT GTCAATCTATTGGGAAAGTGGAAGGATTCTGAATATGGAGGTGGTCATTCTATCCCTGTTGGTGGAATTGCATACTATAT CACTGCACCATCAAGCTTAGCTGATATGGCCGCCAATCCTTTCCATGCGTTGTTCTATCTGGTGTTTATGCTTTCAGCCT GTGCTTTGTTCTCTAAAACTTGGATTGAAGTCTCTGGTTCATCTGCTAGAGATGTTGCCAAGCAGCTGAAGGAGCAACAA ATGGTAATGCCTGGACACCGTGAGTCGAACTTGCAGAAAGAACTTAACCGATATATTCCCACCGCTGCAGCATTTGGAGG CATTTGTATTGGTGCTCTGACAGTGTTGGCAGATTTTATGGGAGCTATTGGTTCAGGGACAGGGATATTGCTTGCGGTGA CAATCATCTACCAGTACTTTGAGACATTTGAGAAGGAGAGAGCCAGCGAGCTTGGCTTCTTTGGTTTCTAA 

Protein sequence (LotjaGi4g1v0113300.2) extracted from Lotus japonicus Gifu v1.2 Proteins.

MGGGFRVLHLVRPFLSFLPEVQTADRKVPFREKVIYTVISLFIFLVCSQLPLYGIHSTTGADPFYWMRVILASNRGTVME LGITPIVTSGLVMQLLAGSKIIEVDNNVREDRALLNGAQKLLGILIAVGEAVAYVLSGMYGSVGQLGVGNAILIILQLCF AGIIVICLDELLQKGYGLGSGISLFIATNICENIIWKAFSPTTINSGRGAEFEGAVIALFHLLITRSDKVRALREAFYRQ NLPNVTNLLATVLIFLIVIYFQGFRVVLPVRSKNARGQQGSYPIKLFYTSNMPIILQSALVSNLYFISQLLHRKYSGNFF VNLLGKWKDSEYGGGHSIPVGGIAYYITAPSSLADMAANPFHALFYLVFMLSACALFSKTWIEVSGSSARDVAKQLKEQQ MVMPGHRESNLQKELNRYIPTAAAFGGICIGALTVLADFMGAIGSGTGILLAVTIIYQYFETFEKERASELGFFGF 

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PANTHER 1 476 476 0.0
Phobius 1 33 33 -
PANTHER 1 476 476 0.0
PIRSF 8 471 464 2.3E-99
SUPERFAMILY 10 466 457 2.22E-124
Gene3D 30 475 446 3.3E-184
TIGRFAM 31 467 437 9.7E-109
TMHMM 34 56 23 -
Phobius 34 56 23 -
Pfam 42 76 35 2.4E-18
Phobius 57 75 19 -
Phobius 76 97 22 -
TMHMM 76 98 23 -
ProSitePatterns 77 96 20 -
Pfam 77 459 383 8.6E-76
Phobius 98 117 20 -
Phobius 118 136 19 -
TMHMM 119 141 23 -
Phobius 137 147 11 -
TMHMM 146 168 23 -
Phobius 148 168 21 -
Phobius 169 174 6 -
Phobius 175 196 22 -
TMHMM 175 196 22 -
Phobius 197 247 51 -
TMHMM 245 267 23 -
Phobius 248 268 21 -
Phobius 269 287 19 -
TMHMM 287 309 23 -
Phobius 288 307 20 -
Phobius 308 362 55 -
Phobius 363 382 20 -
TMHMM 363 385 23 -
Phobius 383 417 35 -
TMHMM 415 437 23 -
Phobius 418 436 19 -
Phobius 437 441 5 -
TMHMM 441 460 20 -
Phobius 442 460 19 -
Phobius 461 476 16 -

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
Biological process Protein transport The directed movement of proteins into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore.
Cellular component Membrane A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it.

Expression data

Expression pattern

Expression pattern of LotjaGi4g1v0113300.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

Loading expression data from ljgea-geneid. Please wait…