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| Field | Value |
|---|---|
| Gene ID | LotjaGi4g1v0113300 |
| Transcript ID | LotjaGi4g1v0113300.2 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Protein transport protein Sec61 subunit alpha; TAIR: AT2G34250.1 SecY protein transport family protein; Swiss-Prot: sp|Q54XK2|SC61A_DICDI Protein transport protein Sec61 subunit alpha; TrEMBL-Plants: tr|A0A1J7HEZ2|A0A1J7HEZ2_LUPAN Uncharacterized protein; Found in the gene: LotjaGi4g1v0113300 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:16341560..16344422) extracted from Lotus japonicus Gifu genome v1.2.
ATGGGAGGTGGATTTAGGGTGCTTCACTTGGTTAGACCGTTTCTCTCGTTTCTTCCTGAAGTTCAGACAGCTGACAGGAA AGTTCCATTCAGAGAGAAGGTCATATATACTGTGATCTCTCTTTTCATTTTCCTGGTCTGCAGTCAGCTCCCTCTGTATG GGATACACTCAACAACTGGTGCGGATCCATTCTATTGGATGCGTGTCATCCTTGCTTCCAACCGTGGAACTGTCATGGAG CTCGGGATCACTCCCATTGTGACTTCTGGACTTGTGATGCAGCTTTTAGCTGGATCAAAGATCATTGAAGTTGACAACAA TGTACGAGAGGATCGTGCCCTATTGTAAGTGTCTCTATTTGTACATCTTATATGCGTTCAAAGAGATCATATATGGTGTC ATCCCATGTCAATAATTTCAGCTGGTTTTACATGTGGTTATTTTTGGAGCATATCCTATGTGTTCAGATTGTACTGTATG ATTTATTGCTGTTGCATCTATCTGAGTTAGATACCGTAATCTGTTGCCGCTGAGACATGACAGCTGAGCATGCTCAATTG AATCAGTAATGAATCTGAGTTAATTAGGTTCTTGTTAGTTTTTTTTAGTGTATAAATAAACTTACAAACTCACTTCACTG AGGTGAAATTAGAATTACATTTTCCAGATTCTACTTTCCAATTTTTCTCGTTTCTGCTAGTAGTGGTTGTCCATGTGACA TACATTCCTCCATTTAAAGGTGTATAAAATAGAATTTATTTAGCATGCGCCATGTCGTATCTTACAGTTGTCAACATTTC TTTTTGTGGTTTGCAGTGCTTTAGGGCTCCATATTTTGTTATATAATGTATATTGAGATAATTTCTTTTTCTTTTGCAGG AATGGAGCACAGAAGCTTCTTGGTATATTGATAGCTGTTGGAGAGGCTGTTGCCTATGTTCTTTCGGGAATGTATGGTAG TGTGGGCCAACTTGGAGTAGGAAATGCCATTCTTATCATCCTCCAGCTGTGTTTTGCTGGTATAATTGTGATATGTTTGG ATGAGCTCCTTCAAAAGGGATATGGTCTAGGCTCTGGAATTTCCCTATTCATAGCTACCAATATCTGGTAGGCTTTTACT CTTTGCTAATGAGATACTTCCAGATTTAGTCTATGACATTTGTGCTCTTATATTGTCAAAGCAACTACGAACCAGGTTAT CTGAACCTTTTGTCAAAAACTTAGAAGGATTTTTCATGTTATTTTGCAGTGAAAACATTATATGGAAGGCATTTAGTCCC ACCACCATTAATAGTGGACGTGGAGCTGAATTTGAGGGGGCTGTTATTGCTCTGTTCCATTTGTTGATTACTAGATCAGA CAAGGTTCGTGCGCTTCGCGAGGCATTTTACCGGCAGAATCTTCCCAATGTGACAAATCTTCTTGCAACTGTCTTGATCT TCCTGATTGTGATATACTTCCAAGGTTTCCGTGTGGTCCTGCCTGTAAGGTCAAAGAATGCCCGTGGGCAGCAGGGTTCA TATCCAATTAAACTGTTCTATACCTCCAACATGCCCATTATTCTTCAGTCTGCCCTTGTTTCTAATCTCTACTTCATCTC CCAGGTAATAATAGTTTTATGATAGCTTGAACTTGGTGTGTTTGGGTTTTCTGTTTCAACAATCTAAAATTACGTGTATT GTTCAGCTGCTCCACCGTAAGTACAGTGGAAACTTCTTTGTCAATCTATTGGGAAAGTGGAAGGATTCTGAATATGGAGG TGGTCATTCTATCCCTGTTGGTGGAATTGCATACTATATCACTGCACCATCAAGGTAAGAGAAGCTCTTCCAATGTGGTA TTCTAATATGGTATAAAGCTTTGACCAATTATATAGTCTTTTTTCTAATTCGACAACTCTAAATTTTGCAGCTTAGCTGA TATGGCCGCCAATCCTTTCCATGCGTTGTTCTATCTGGTGTTTATGCTTTCAGCCTGTGCTTTGTTCTCTAAAACTTGGA TTGAAGTCTCTGGTTCATCTGCTAGAGATGTTGCCAAGCAGCTGAAGGTATACTTACCAGATTTTTTTGGCATACTCTGC TTCATTTTTCACTATTTATAACAAGTGCACCTGCTTGATAACCAGGGGATTTAAAAGTTTGAGCAATTGGAGCTCATTTC CCAATTGAGTGAATTGAAATGATTCAATTCTTAATAAAGTAAAATGTTAGCCAGGCTTGATTTTAGCTATCCTTAGAAGC CAGTAATACTTTGTTTACTGTTTTAAACAAGGTTAAGTTTCTAATTGACTATGAAACACTAGTATACTTTTGGGGCCGCT GGCTGATCCATTGGAGGCAGTTTATTCTTATAAACTATCATTGAACTTTTAGCAGTTCATAGATATTGGGATGAACTGGT ACAATATCATGGATGTGATATGCTTTGGCACCAAATTTGGAAGCATATGAATTGATTAGTTTAGAATATTAGTTCAGGAC TGGGGTCAATGGTTTGGGCAACTTGGATTCTGAAACTGAGTTTGTTGCTGGAAATACTGTTCTATTGCATGGAAATTCAT CTTTGAATTATAGTTCTTTTGAGTGTGCAGTACTTATTAATTACATGTCTTTTGAATTTGCAGGAGCAACAAATGGTAAT GCCTGGACACCGTGAGTCGAACTTGCAGAAAGAACTTAACCGATATATTCCCACCGCTGCAGCATTTGGAGGCATTTGTA TTGGTGCTCTGACAGTGTTGGCAGATTTTATGGGAGCTATTGGTTCAGGGACAGGGATATTGCTTGCGGTGACAATCATC TACCAGTACTTTGAGACATTTGAGAAGGAGAGAGCCAGCGAGCTTGGCTTCTTTGGTTTCTAA
CDS sequence (LotjaGi4g1v0113300.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGGAGGTGGATTTAGGGTGCTTCACTTGGTTAGACCGTTTCTCTCGTTTCTTCCTGAAGTTCAGACAGCTGACAGGAA AGTTCCATTCAGAGAGAAGGTCATATATACTGTGATCTCTCTTTTCATTTTCCTGGTCTGCAGTCAGCTCCCTCTGTATG GGATACACTCAACAACTGGTGCGGATCCATTCTATTGGATGCGTGTCATCCTTGCTTCCAACCGTGGAACTGTCATGGAG CTCGGGATCACTCCCATTGTGACTTCTGGACTTGTGATGCAGCTTTTAGCTGGATCAAAGATCATTGAAGTTGACAACAA TGTACGAGAGGATCGTGCCCTATTGAATGGAGCACAGAAGCTTCTTGGTATATTGATAGCTGTTGGAGAGGCTGTTGCCT ATGTTCTTTCGGGAATGTATGGTAGTGTGGGCCAACTTGGAGTAGGAAATGCCATTCTTATCATCCTCCAGCTGTGTTTT GCTGGTATAATTGTGATATGTTTGGATGAGCTCCTTCAAAAGGGATATGGTCTAGGCTCTGGAATTTCCCTATTCATAGC TACCAATATCTGTGAAAACATTATATGGAAGGCATTTAGTCCCACCACCATTAATAGTGGACGTGGAGCTGAATTTGAGG GGGCTGTTATTGCTCTGTTCCATTTGTTGATTACTAGATCAGACAAGGTTCGTGCGCTTCGCGAGGCATTTTACCGGCAG AATCTTCCCAATGTGACAAATCTTCTTGCAACTGTCTTGATCTTCCTGATTGTGATATACTTCCAAGGTTTCCGTGTGGT CCTGCCTGTAAGGTCAAAGAATGCCCGTGGGCAGCAGGGTTCATATCCAATTAAACTGTTCTATACCTCCAACATGCCCA TTATTCTTCAGTCTGCCCTTGTTTCTAATCTCTACTTCATCTCCCAGCTGCTCCACCGTAAGTACAGTGGAAACTTCTTT GTCAATCTATTGGGAAAGTGGAAGGATTCTGAATATGGAGGTGGTCATTCTATCCCTGTTGGTGGAATTGCATACTATAT CACTGCACCATCAAGCTTAGCTGATATGGCCGCCAATCCTTTCCATGCGTTGTTCTATCTGGTGTTTATGCTTTCAGCCT GTGCTTTGTTCTCTAAAACTTGGATTGAAGTCTCTGGTTCATCTGCTAGAGATGTTGCCAAGCAGCTGAAGGAGCAACAA ATGGTAATGCCTGGACACCGTGAGTCGAACTTGCAGAAAGAACTTAACCGATATATTCCCACCGCTGCAGCATTTGGAGG CATTTGTATTGGTGCTCTGACAGTGTTGGCAGATTTTATGGGAGCTATTGGTTCAGGGACAGGGATATTGCTTGCGGTGA CAATCATCTACCAGTACTTTGAGACATTTGAGAAGGAGAGAGCCAGCGAGCTTGGCTTCTTTGGTTTCTAA
Protein sequence (LotjaGi4g1v0113300.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MGGGFRVLHLVRPFLSFLPEVQTADRKVPFREKVIYTVISLFIFLVCSQLPLYGIHSTTGADPFYWMRVILASNRGTVME LGITPIVTSGLVMQLLAGSKIIEVDNNVREDRALLNGAQKLLGILIAVGEAVAYVLSGMYGSVGQLGVGNAILIILQLCF AGIIVICLDELLQKGYGLGSGISLFIATNICENIIWKAFSPTTINSGRGAEFEGAVIALFHLLITRSDKVRALREAFYRQ NLPNVTNLLATVLIFLIVIYFQGFRVVLPVRSKNARGQQGSYPIKLFYTSNMPIILQSALVSNLYFISQLLHRKYSGNFF VNLLGKWKDSEYGGGHSIPVGGIAYYITAPSSLADMAANPFHALFYLVFMLSACALFSKTWIEVSGSSARDVAKQLKEQQ MVMPGHRESNLQKELNRYIPTAAAFGGICIGALTVLADFMGAIGSGTGILLAVTIIYQYFETFEKERASELGFFGF
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 476 | 476 | 0.0 | – | |
| Phobius | 1 | 33 | 33 | - | – | |
| PANTHER | 1 | 476 | 476 | 0.0 | ||
| PIRSF | 8 | 471 | 464 | 2.3E-99 | ||
| SUPERFAMILY | 10 | 466 | 457 | 2.22E-124 | ||
| Gene3D | 30 | 475 | 446 | 3.3E-184 | ||
| TIGRFAM | 31 | 467 | 437 | 9.7E-109 | ||
| TMHMM | 34 | 56 | 23 | - | – | |
| Phobius | 34 | 56 | 23 | - | – | |
| Pfam | 42 | 76 | 35 | 2.4E-18 | ||
| Phobius | 57 | 75 | 19 | - | – | |
| Phobius | 76 | 97 | 22 | - | – | |
| TMHMM | 76 | 98 | 23 | - | – | |
| ProSitePatterns | 77 | 96 | 20 | - | ||
| Pfam | 77 | 459 | 383 | 8.6E-76 | ||
| Phobius | 98 | 117 | 20 | - | – | |
| Phobius | 118 | 136 | 19 | - | – | |
| TMHMM | 119 | 141 | 23 | - | – | |
| Phobius | 137 | 147 | 11 | - | – | |
| TMHMM | 146 | 168 | 23 | - | – | |
| Phobius | 148 | 168 | 21 | - | – | |
| Phobius | 169 | 174 | 6 | - | – | |
| Phobius | 175 | 196 | 22 | - | – | |
| TMHMM | 175 | 196 | 22 | - | – | |
| Phobius | 197 | 247 | 51 | - | – | |
| TMHMM | 245 | 267 | 23 | - | – | |
| Phobius | 248 | 268 | 21 | - | – | |
| Phobius | 269 | 287 | 19 | - | – | |
| TMHMM | 287 | 309 | 23 | - | – | |
| Phobius | 288 | 307 | 20 | - | – | |
| Phobius | 308 | 362 | 55 | - | – | |
| Phobius | 363 | 382 | 20 | - | – | |
| TMHMM | 363 | 385 | 23 | - | – | |
| Phobius | 383 | 417 | 35 | - | – | |
| TMHMM | 415 | 437 | 23 | - | – | |
| Phobius | 418 | 436 | 19 | - | – | |
| Phobius | 437 | 441 | 5 | - | – | |
| TMHMM | 441 | 460 | 20 | - | – | |
| Phobius | 442 | 460 | 19 | - | – | |
| Phobius | 461 | 476 | 16 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Biological process | Protein transport | The directed movement of proteins into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. | ||
| Cellular component | Membrane | A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. |
Expression pattern of LotjaGi4g1v0113300.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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