Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message
| Field | Value |
|---|---|
| Gene ID | LotjaGi4g1v0114500 |
| Transcript ID | LotjaGi4g1v0114500.1 |
| Related isoforms 4 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | PQ-loop repeat family protein / transmembrane family protein; TAIR: AT4G36850.1 PQ-loop repeat family protein / transmembrane family protein; Swiss-Prot: sp|Q12010|YPQ1_YEAST Probable vacuolar amino acid transporter YPQ1; TrEMBL-Plants: tr|G7LFJ3|G7LFJ3_MEDTR PQ-loop protein/transmembrane family protein; Found in the gene: LotjaGi4g1v0114500 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:16547975..16553739) extracted from Lotus japonicus Gifu genome v1.2.
CCCTAATCCAAATGGACAATACCGTCCGACAGAGTTTTCACTATCACTAGTTGCGTCTCGTTGTGTCTTACTAGTGCTAT TTCGGTGAGCTATGTTCCTATAAAACCAGCTCCTGCTATCTTTTCAAAGACACACCAGTGACACCACCACCTTTCCATTT CTCAGCTGAAACTCGCACACAAAAAAGAGAAAGAAGGTTAAAGATTATTATGGCACCTTCTTACTGTGTGAATGAGAGGA AACCCTGTGTAGGATGGGTTGAGACATACTTCAATGACTGTCTTTGCACCATGAAAGATGACATCTCGTTCAGTCTTGGA CTTACCAGTTTAGCATTCTGGGGAATAGCAGAAATCCCTCAAATCATCACCATTTTTCGCACCAAGTCCAACCATGGAAT GTCCCTTGCCTTTCTCTGCACTTGGGTCGCTGGGTTCGTTCCATTTTCAATTTAATTCATACACTTTTTCACTTTTTACT ATTGTTGCGAAATCATTTATAGGTATCATGTTTTACTAAATGCATGTTTGGAAACTCGTTGAAAATCCACCTAACTAAAT TAAGATGTACAAAAGTAACTTTCTTATGATATAATGGTCTTTATGAACAATGCAATTCTGGCTGCAGTGGCAATTTCAGA ATTTATGAAAAAAATTAACTCTAGAGTTTGTGGCCGTTCAAAACTGTCACAAACCGTAAGTGTCGCAACTTTCACATATA TTTCCATATCCATGAATCTCCACTACTGATTATGATTTTGACTTCATTGATATTTTGAACGAGTTTATAGTACAAATGTA AAATATATGGGAACAAAGGGTTGATTAAGAATATTTTGATTTTGATGCAGAGACATATGCAACCTGGTAGGTTGCCTTCT GGAACCAGCTACGGTGAGTCACTCTGAACCAAATGAACTATTAAATGTTTTGTTTGGTTGCAAGGTGGTCCTGAAACAGA GAGCCCTGACATTCAATGCAACTGGGTGGCCTTGATGTTCTCTGTTATCCTGATGATGCTCTGTATCATATCATCCACTA CGTTCTCTACATTTTTTTCATTATTTGTGATTCTCTGGACTCACTTTTTGTCATTTTGCTGTTTGTTTTTTCCTGTTTGG ATATGGATATGGATGCACGTGCTGATGCAGCTGCCCACACAGTATTACACTGCATTGGTAAATAATTGCAAGTTCCAATT TTTTGTTGTATCTTGTTCTTCTTTGCACATTGTATATTTCAAATGTTTATCCTGATTGAGAAATCAACTTATGTAGCTGT GATGTTATACAATAAAAAATGTTTTGTTGATTTGCTCACACTTTCCTTAGAGCGTAAAAGAAGTGGTGTCAAGCCATAGA AGAAAACGAAAGAGAGCATAAGATGTGATATATATATGTTATAATAAGAAAAAAAAAATTAGAAATAGTTCACAATTTGC GAAAATCATGTAAAAATATAACGAGGTATTATGAATAAACTCATACTCCTTCTATATAGATAATAAAATTCTTTAAAACT CATTTGATTATTCAATCTAACTTGGGTACACAGGCCGAGGGAGGGGATATGCTGTTGCTATGATCCCCTAAAGCTTTTTT ATTTTATTTTCTGATATATATGTATGTAAGGTGTAAAAATCATTGTAAACATGTCATATTTTTTTATCTCAGCCTCTCTT TGAACTTAGCCTCCTAATATCAAATTCCTACCTCTATCACTAGTGTCTAGGTACATGTCTGATTTTGTTTGAGTAAGGTC TCAATTCGAGTTTTATAGATGAAAAAAATCAATGAAAAAGCTAACACCACCACGATATCAATGTTCTCACTTCTCATGAT GGATACATACATATGATGTGATACACTAAAAAAAAATTACTCAAACAACAATTGTAACTGTTGAGAAGTATCACATTAGC TTAAAATATGTTAAAGTAAGTCTTATTGTTAAGTCATCATCGCTTTTTGGGTAGAGTATGTCCTAGCTCAAATTCTAAGA TAGTATTAGAGTCTTTTCTATATCTGTTTATTGGAGGCCTCTTATATATGGGTGGTCACTTGCGGATATTTATTCCTGTA AATTTCACGTTTCATATGGTCATCCCTTGAATGTGAGAGAGGGTGTTTAAGAATCTCACATTAATTAACAATATGACTAA TAAGTTCTTACTTTCTACGGATTGCTTCTTTCGCCTCTTTCACCATCAAAGTGCCTATGGTACCGGTTCATATTTGATTA GCCGAAGCTCACCCCTAAACTATCTTTTAGAGTAAAATTAAGCCCAACATACATTTTAATAGTAATATCTTACTTTACAC TCTAAAATATTGTGTAAAAACAATATATGTATTTATATAGATTTTTTTTATTCTTAGTTCGGCCCTCTTGTTAACTTCGT TTTTTATAGCAACGTTAGGCGCAGTAAGGAAAAAAAAAACTATAGGGGGGGAATTAGTAGATCTCCATATCAAGGGATGG ATCTGATAAAGGAACTTGTGCAGATATTATCTCAGGGTTAAGCCTTCATTTAGGTCCAAGTTTTGGTAATTTGGGAGGAG GCACTTCTTTAAGAAAATAAAAGGCATGAGCATGACAAGAGTTCGTGGGGGAAGAATTTACGTTAGAAGGTTGAAGCCAC GCTTTTTATATGATTTACAACTACATGATGTGTCTCAAAAAGGATTGTTGGCATCTTTAAAAAATCTGTAACAGCTATTA AGGCAGTCGAAGAGACTCGCTAGTCGTTAAGGTAAACTAGTTGTTGGAAGGACCAACCGTAGGTCTAGGTTTAGTCGATG GCATGCTAAGGTGAAATGACTAGAGGGCAAAGTCATGAATGTGGACAAGAATTGAGGAAAGGTACATGGGCTCAATCCGG AGTTGAAGATATTTTACGGGCTTCTAGAAGATCTACATAGTGGCAGGTGATTGTTAATTGTTGTAGGCTTGTTAAATTTG CCTCTATAAATCAAGGAAAAAACACAACTCAAACATTTATCTTTTGCATTTAGTTGTTGACTTAGTTCATAGCTTTACCT TAGTCACAATTTCTCAATAGCGATCACTAAGAGATTTTTAAAGTGTTTTACAAACCTACATTGAGGAACATGGTCTCTTA CTCGAGTAATTACTTAATTAGAAAATCGTTACGTTGCTTTCTCAGCCGACCCACACAGCTACATAGTCACAATCTATTTG TAAACCAACAAAGATAAAATCTTTATTTAAACCAATTAGTCCCCTATACTCAGTTGTATTAAGGTATCATTAATATTCCA CCTGTTTAACCTACAAAATCACAAGATCTTAATTAGCAGTTGTTATTGTGATTAACAGCTTTACATGAGCACCACGATCT TGTTAGTATCGCAAGTCATATATTTTGACTACATCAGTAGATGGTGTACACATCGTCACAACATCAACAACAAAGGGGTA CATTTCCAATTTCTTTGACTCCTAATAGAAATACTTAAGCCCTGTTTTTTGGCTAATTAATATCAAATGTCTATCTTGTA GCAGACTCATGAGGAAGAGGAAAGACCATTGAAACCGAAAGCTAGTGAGGAGTCTGAGATTCCAATACCAAATGGCACAC CCAGAGCTGCACCTAGACGAGAGTATTACTATATGTAAGAACAATTTCCTAGCAATTAGTGTCAATTGTAAAATTTAATT TGCATTTTAGAAGTAAAATTAGTTCAAATTGTTATATATGTGTGACATGAAAAATGAACTAAAGTGCTTGAGTTCTAATT ATGCAGGTCAGCAAGGTCATTGGCTGGAAGTGCCACTCCACCCTCGCTTAGCTACATAAGAGCTGCTAGAAGTGGCCCAT CAGCCATGGAATTCAACGGCGCGGACTCTTCTTCTGACGATGAAGCACCTCCACCTACCTCTGCATCTCGTTCTCTAGCT GTGAGTCACTCACTTGTTTGCCTCAAACATGCTACTTTCCTCCCACTTCTAAAGTTAGACTTTATACCTCTTTAGACGCT GACCAAAAAACACTAATTATCCGAGCTTATCTAGTGTTTTTTTCTCAGATAAGGTGCAATAAGTATTATTTAGTCCGTAT CCGAACTGACTCTTTGTAAATTTTAATGTGTCACACGCGTTTATTAAGTCTTACCTTGCTTTTTACGCGTACATTTCCAG GATCTTGAACCCGTGATCTCAATCATTTGACAACGGCTTTAGTCTTCTTGAGCTTAATTAGTCTTTGCCTCCTTACAGTG ATGATACATATAATAATGCTATATGCTTGCTTGTGGTGCTTGACAGGGAAGTTATGGAACATTTCTAGCAGCATCCCTTA ACTTGCCCCTGAAGAGTGATGCTTTGAGACATTATGGATACACAGGATTTACTACAAGAAAGCTCTTACAGGTAACACTG ACTAGTGGCACTGGTGAAATAATTAAATTGAATTACACTCATAATTTTATCTCGTGTTTGATTTCTTAATTAATTTGCAT AACTACATTTTCTAGTTTCTAGTAATTAATTAAGATTCATGACAGGGAGACGAGATACATAATGCAATTGGTCTTTGGTT GGGATGGCTCATGGCAGCTATCTATATAAGTAGTCGTCTTCCTCAAATATGGTTAAACGTAATTCTCCAACTTCTTTTCA TTATTTAATTTTGGGTTTGGAATATTATTCCTTTATTTTGATTATATTGTTATGTCCTTATTTTTTTATCAGATTAAAAG AGGGAGTGTGGAGGTAATTTTATCTTTAAACATTCTTCTTGCCTTTTGATTATGAATTAGCATTTCTACTGATTTATACA TGCTCTGTTCTGATTATTACAGGGCTTAAGTCCTTTCATGTTCATCTTTGCACTGGTAGCTAATGTTACATACGTAGGAA GGTTCAATTTAATTCCCTCCTTCTGCATAAATCTGGTCCTAATTCTCCAAATTATGTGAAGTTATTTAGTTCTAATTAAC ATTTGTATTGATGCAGTATTCTTGTACGAGCTACGGAATTCAAAAGCATCAAAGCTAATATGCCATGGTTGCTGGATGCC ACCGTTTGCGTGACACTGGACATTTTTGTATCCTAAACATGCATGTTTAGACACACGCAGTAAAATCATAATGAAGCCAA AATCACAGTGGACAGAAGCAAATTTCTTTAGTTTTTGCAATTGTTCACCATGATTTTTGTCTCACCATGATTTTCCTCCG TCTATCCAAGCATACACGAAGTTCTTGATGTTAGATTTTTTTTTTTTTTTTTTGAATTTCAGTGCTCTCTGTTAACCCTG CTGTGTATACTACAGAAAAAAGTATGATTATAACTGAAACCTTAACAACATTTGATAGATAATATCGCAGTACATCTACT ATAGATACTTTCAAAAGAGAGAAAGAGAAGCAAGTGATGATAGAGACTACAAAGAAGTGGGAAAAGCTGCTGCATCTTGA ATCTTGAGCTGTGTAACTCTGCCTTAACTAATTGAAGTTCAATTTGAAACATCAGTGACAATCAGCATTTTCCCTAAATT GGGCCACTATTTTTGCTTATGTTACACTCTTCAAGGAGATGGAAGTCAACAAATATTATACAGGGATTATATGATATATT AATGTATCCATTAACATGAACTTGCTTATGACATGATCGTAGTGGCTACTCTGATATTGATGTATTGATTACAGCCAAAA CATGTGAGAGACCATAGTTTCTTTATTATAATTTTCAAGACTGATGAACCACCATATTTGTGTTGGATCCAAAAGATATC TAGTA
CDS sequence (LotjaGi4g1v0114500.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCACCTTCTTACTGTGTGAATGAGAGGAAACCCTGTGTAGGATGGGTTGAGACATACTTCAATGACTGTCTTTGCAC CATGAAAGATGACATCTCGTTCAGTCTTGGACTTACCAGTTTAGCATTCTGGGGAATAGCAGAAATCCCTCAAATCATCA CCATTTTTCGCACCAAGTCCAACCATGGAATGTCCCTTGCCTTTCTCTGCACTTGGGTCGCTGGAGACATATGCAACCTG GTAGGTTGCCTTCTGGAACCAGCTACGCTGCCCACACAGTATTACACTGCATTGCTTTACATGAGCACCACGATCTTGTT AGTATCGCAAGTCATATATTTTGACTACATCAGTAGATGGTGTACACATCGTCACAACATCAACAACAAAGGGACTCATG AGGAAGAGGAAAGACCATTGAAACCGAAAGCTAGTGAGGAGTCTGAGATTCCAATACCAAATGGCACACCCAGAGCTGCA CCTAGACGAGAGTATTACTATATGTCAGCAAGGTCATTGGCTGGAAGTGCCACTCCACCCTCGCTTAGCTACATAAGAGC TGCTAGAAGTGGCCCATCAGCCATGGAATTCAACGGCGCGGACTCTTCTTCTGACGATGAAGCACCTCCACCTACCTCTG CATCTCGTTCTCTAGCTGGAAGTTATGGAACATTTCTAGCAGCATCCCTTAACTTGCCCCTGAAGAGTGATGCTTTGAGA CATTATGGATACACAGGATTTACTACAAGAAAGCTCTTACAGGGAGACGAGATACATAATGCAATTGGTCTTTGGTTGGG ATGGCTCATGGCAGCTATCTATATAAGTAGTCGTCTTCCTCAAATATGGTTAAACATTAAAAGAGGGAGTGTGGAGGGCT TAAGTCCTTTCATGTTCATCTTTGCACTGGTAGCTAATGTTACATACGTAGGAAGTATTCTTGTACGAGCTACGGAATTC AAAAGCATCAAAGCTAATATGCCATGGTTGCTGGATGCCACCGTTTGCGTGACACTGGACATTTTTATAATATCGCAGTA CATCTACTATAGATACTTTCAAAAGAGAGAAAGAGAAGCAAGTGATGATAGAGACTACAAAGAAGTGGGAAAAGCTGCTG CATCTTGA
Protein sequence (LotjaGi4g1v0114500.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MAPSYCVNERKPCVGWVETYFNDCLCTMKDDISFSLGLTSLAFWGIAEIPQIITIFRTKSNHGMSLAFLCTWVAGDICNL VGCLLEPATLPTQYYTALLYMSTTILLVSQVIYFDYISRWCTHRHNINNKGTHEEEERPLKPKASEESEIPIPNGTPRAA PRREYYYMSARSLAGSATPPSLSYIRAARSGPSAMEFNGADSSSDDEAPPPTSASRSLAGSYGTFLAASLNLPLKSDALR HYGYTGFTTRKLLQGDEIHNAIGLWLGWLMAAIYISSRLPQIWLNIKRGSVEGLSPFMFIFALVANVTYVGSILVRATEF KSIKANMPWLLDATVCVTLDIFIISQYIYYRYFQKREREASDDRDYKEVGKAAAS
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 374 | 374 | 2.8E-195 | – | |
| PANTHER | 1 | 374 | 374 | 2.8E-195 | – | |
| Phobius | 1 | 31 | 31 | - | – | |
| Gene3D | 28 | 125 | 98 | 8.1E-8 | – | |
| Pfam | 32 | 88 | 57 | 2.6E-16 | ||
| Phobius | 32 | 54 | 23 | - | – | |
| TMHMM | 34 | 56 | 23 | - | – | |
| SMART | 46 | 77 | 32 | 1.8E-8 | ||
| Phobius | 55 | 65 | 11 | - | – | |
| Phobius | 66 | 88 | 23 | - | – | |
| Phobius | 89 | 93 | 5 | - | – | |
| TMHMM | 92 | 114 | 23 | - | – | |
| Phobius | 94 | 114 | 21 | - | – | |
| Phobius | 115 | 257 | 143 | - | – | |
| MobiDBLite | 130 | 158 | 29 | - | – | |
| MobiDBLite | 130 | 145 | 16 | - | – | |
| MobiDBLite | 195 | 216 | 22 | - | – | |
| MobiDBLite | 196 | 216 | 21 | - | – | |
| Phobius | 258 | 277 | 20 | - | – | |
| TMHMM | 261 | 283 | 23 | - | – | |
| Gene3D | 262 | 367 | 106 | 1.0E-6 | – | |
| Pfam | 263 | 320 | 58 | 1.4E-17 | ||
| SMART | 276 | 307 | 32 | 9.4E-10 | ||
| Phobius | 278 | 296 | 19 | - | – | |
| TMHMM | 293 | 315 | 23 | - | – | |
| Phobius | 297 | 317 | 21 | - | – | |
| Phobius | 318 | 328 | 11 | - | – | |
| TMHMM | 328 | 350 | 23 | - | – | |
| Phobius | 329 | 349 | 21 | - | – | |
| Phobius | 350 | 375 | 26 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi4g1v0114500.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
Loading expression data from ljgea-geneid. Please wait…