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| Field | Value |
|---|---|
| Gene ID | LotjaGi4g1v0114500 |
| Transcript ID | LotjaGi4g1v0114500.4 |
| Related isoforms 4 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | PQ-loop repeat family protein / transmembrane family protein; TAIR: AT4G36850.1 PQ-loop repeat family protein / transmembrane family protein; Swiss-Prot: sp|Q12010|YPQ1_YEAST Probable vacuolar amino acid transporter YPQ1; TrEMBL-Plants: tr|G7LFJ3|G7LFJ3_MEDTR PQ-loop protein/transmembrane family protein; Found in the gene: LotjaGi4g1v0114500 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:16547998..16553722) extracted from Lotus japonicus Gifu genome v1.2.
GTCCGACAGAGTTTTCACTATCACTAGTTGCGTCTCGTTGTGTCTTACTAGTGCTATTTCGGTGAGCTATGTTCCTATAA AACCAGCTCCTGCTATCTTTTCAAAGACACACCAGTGACACCACCACCTTTCCATTTCTCAGCTGAAACTCGCACACAAA AAAGAGAAAGAAGGTTAAAGATTATTATGGCACCTTCTTACTGTGTGAATGAGAGGAAACCCTGTGTAGGATGGGTTGAG ACATACTTCAATGACTGTCTTTGCACCATGAAAGATGACATCTCGTTCAGTCTTGGACTTACCAGTTTAGCATTCTGGGG AATAGCAGAAATCCCTCAAATCATCACCATTTTTCGCACCAAGTCCAACCATGGAATGTCCCTTGCCTTTCTCTGCACTT GGGTCGCTGGGTTCGTTCCATTTTCAATTTAATTCATACACTTTTTCACTTTTTACTATTGTTGCGAAATCATTTATAGG TATCATGTTTTACTAAATGCATGTTTGGAAACTCGTTGAAAATCCACCTAACTAAATTAAGATGTACAAAAGTAACTTTC TTATGATATAATGGTCTTTATGAACAATGCAATTCTGGCTGCAGTGGCAATTTCAGAATTTATGAAAAAAATTAACTCTA GAGTTTGTGGCCGTTCAAAACTGTCACAAACCGTAAGTGTCGCAACTTTCACATATATTTCCATATCCATGAATCTCCAC TACTGATTATGATTTTGACTTCATTGATATTTTGAACGAGTTTATAGTACAAATGTAAAATATATGGGAACAAAGGGTTG ATTAAGAATATTTTGATTTTGATGCAGAGACATATGCAACCTGGTAGGTTGCCTTCTGGAACCAGCTACGGTGAGTCACT CTGAACCAAATGAACTATTAAATGTTTTGTTTGGTTGCAAGGTGGTCCTGAAACAGAGAGCCCTGACATTCAATGCAACT GGGTGGCCTTGATGTTCTCTGTTATCCTGATGATGCTCTGTATCATATCATCCACTACGTTCTCTACATTTTTTTCATTA TTTGTGATTCTCTGGACTCACTTTTTGTCATTTTGCTGTTTGTTTTTTCCTGTTTGGATATGGATATGGATGCACGTGCT GATGCAGCTGCCCACACAGTATTACACTGCATTGGTAAATAATTGCAAGTTCCAATTTTTTGTTGTATCTTGTTCTTCTT TGCACATTGTATATTTCAAATGTTTATCCTGATTGAGAAATCAACTTATGTAGCTGTGATGTTATACAATAAAAAATGTT TTGTTGATTTGCTCACACTTTCCTTAGAGCGTAAAAGAAGTGGTGTCAAGCCATAGAAGAAAACGAAAGAGAGCATAAGA TGTGATATATATATGTTATAATAAGAAAAAAAAAATTAGAAATAGTTCACAATTTGCGAAAATCATGTAAAAATATAACG AGGTATTATGAATAAACTCATACTCCTTCTATATAGATAATAAAATTCTTTAAAACTCATTTGATTATTCAATCTAACTT GGGTACACAGGCCGAGGGAGGGGATATGCTGTTGCTATGATCCCCTAAAGCTTTTTTATTTTATTTTCTGATATATATGT ATGTAAGGTGTAAAAATCATTGTAAACATGTCATATTTTTTTATCTCAGCCTCTCTTTGAACTTAGCCTCCTAATATCAA ATTCCTACCTCTATCACTAGTGTCTAGGTACATGTCTGATTTTGTTTGAGTAAGGTCTCAATTCGAGTTTTATAGATGAA AAAAATCAATGAAAAAGCTAACACCACCACGATATCAATGTTCTCACTTCTCATGATGGATACATACATATGATGTGATA CACTAAAAAAAAATTACTCAAACAACAATTGTAACTGTTGAGAAGTATCACATTAGCTTAAAATATGTTAAAGTAAGTCT TATTGTTAAGTCATCATCGCTTTTTGGGTAGAGTATGTCCTAGCTCAAATTCTAAGATAGTATTAGAGTCTTTTCTATAT CTGTTTATTGGAGGCCTCTTATATATGGGTGGTCACTTGCGGATATTTATTCCTGTAAATTTCACGTTTCATATGGTCAT CCCTTGAATGTGAGAGAGGGTGTTTAAGAATCTCACATTAATTAACAATATGACTAATAAGTTCTTACTTTCTACGGATT GCTTCTTTCGCCTCTTTCACCATCAAAGTGCCTATGGTACCGGTTCATATTTGATTAGCCGAAGCTCACCCCTAAACTAT CTTTTAGAGTAAAATTAAGCCCAACATACATTTTAATAGTAATATCTTACTTTACACTCTAAAATATTGTGTAAAAACAA TATATGTATTTATATAGATTTTTTTTATTCTTAGTTCGGCCCTCTTGTTAACTTCGTTTTTTATAGCAACGTTAGGCGCA GTAAGGAAAAAAAAAACTATAGGGGGGGAATTAGTAGATCTCCATATCAAGGGATGGATCTGATAAAGGAACTTGTGCAG ATATTATCTCAGGGTTAAGCCTTCATTTAGGTCCAAGTTTTGGTAATTTGGGAGGAGGCACTTCTTTAAGAAAATAAAAG GCATGAGCATGACAAGAGTTCGTGGGGGAAGAATTTACGTTAGAAGGTTGAAGCCACGCTTTTTATATGATTTACAACTA CATGATGTGTCTCAAAAAGGATTGTTGGCATCTTTAAAAAATCTGTAACAGCTATTAAGGCAGTCGAAGAGACTCGCTAG TCGTTAAGGTAAACTAGTTGTTGGAAGGACCAACCGTAGGTCTAGGTTTAGTCGATGGCATGCTAAGGTGAAATGACTAG AGGGCAAAGTCATGAATGTGGACAAGAATTGAGGAAAGGTACATGGGCTCAATCCGGAGTTGAAGATATTTTACGGGCTT CTAGAAGATCTACATAGTGGCAGGTGATTGTTAATTGTTGTAGGCTTGTTAAATTTGCCTCTATAAATCAAGGAAAAAAC ACAACTCAAACATTTATCTTTTGCATTTAGTTGTTGACTTAGTTCATAGCTTTACCTTAGTCACAATTTCTCAATAGCGA TCACTAAGAGATTTTTAAAGTGTTTTACAAACCTACATTGAGGAACATGGTCTCTTACTCGAGTAATTACTTAATTAGAA AATCGTTACGTTGCTTTCTCAGCCGACCCACACAGCTACATAGTCACAATCTATTTGTAAACCAACAAAGATAAAATCTT TATTTAAACCAATTAGTCCCCTATACTCAGTTGTATTAAGGTATCATTAATATTCCACCTGTTTAACCTACAAAATCACA AGATCTTAATTAGCAGTTGTTATTGTGATTAACAGCTTTACATGAGCACCACGATCTTGTTAGTATCGCAAGTCATATAT TTTGACTACATCAGTAGATGGTGTACACATCGTCACAACATCAACAACAAAGGGGTACATTTCCAATTTCTTTGACTCCT AATAGAAATACTTAAGCCCTGTTTTTTGGCTAATTAATATCAAATGTCTATCTTGTAGCAGACTCATGAGGAAGAGGAAA GACCATTGAAACCGAAAGCTAGTGAGGAGTCTGAGATTCCAATACCAAATGGCACACCCAGAGCTGCACCTAGACGAGAG TATTACTATATGTAAGAACAATTTCCTAGCAATTAGTGTCAATTGTAAAATTTAATTTGCATTTTAGAAGTAAAATTAGT TCAAATTGTTATATATGTGTGACATGAAAAATGAACTAAAGTGCTTGAGTTCTAATTATGCAGGTCAGCAAGGTCATTGG CTGGAAGTGCCACTCCACCCTCGCTTAGCTACATAAGAGCTGCTAGAAGTGGCCCATCAGCCATGGAATTCAACGGCGCG GACTCTTCTTCTGACGATGAAGCACCTCCACCTACCTCTGCATCTCGTTCTCTAGCTGTGAGTCACTCACTTGTTTGCCT CAAACATGCTACTTTCCTCCCACTTCTAAAGTTAGACTTTATACCTCTTTAGACGCTGACCAAAAAACACTAATTATCCG AGCTTATCTAGTGTTTTTTTCTCAGATAAGGTGCAATAAGTATTATTTAGTCCGTATCCGAACTGACTCTTTGTAAATTT TAATGTGTCACACGCGTTTATTAAGTCTTACCTTGCTTTTTACGCGTACATTTCCAGGATCTTGAACCCGTGATCTCAAT CATTTGACAACGGCTTTAGTCTTCTTGAGCTTAATTAGTCTTTGCCTCCTTACAGTGATGATACATATAATAATGCTATA TGCTTGCTTGTGGTGCTTGACAGGGAAGTTATGGAACATTTCTAGCAGCATCCCTTAACTTGCCCCTGAAGAGTGATGCT TTGAGACATTATGGATACACAGGATTTACTACAAGAAAGCTCTTACAGGTAACACTGACTAGTGGCACTGGTGAAATAAT TAAATTGAATTACACTCATAATTTTATCTCGTGTTTGATTTCTTAATTAATTTGCATAACTACATTTTCTAGTTTCTAGT AATTAATTAAGATTCATGACAGGGAGACGAGATACATAATGCAATTGGTCTTTGGTTGGGATGGCTCATGGCAGCTATCT ATATAAGTAGTCGTCTTCCTCAAATATGGTTAAACGTAATTCTCCAACTTCTTTTCATTATTTAATTTTGGGTTTGGAAT ATTATTCCTTTATTTTGATTATATTGTTATGTCCTTATTTTTTTATCAGATTAAAAGAGGGAGTGTGGAGGTAATTTTAT CTTTAAACATTCTTCTTGCCTTTTGATTATGAATTAGCATTTCTACTGATTTATACATGCTCTGTTCTGATTATTACAGG GCTTAAGTCCTTTCATGTTCATCTTTGCACTGGTAGCTAATGTTACATACGTAGGAAGGTTCAATTTAATTCCCTCCTTC TGCATAAATCTGGTCCTAATTCTCCAAATTATGTGAAGTTATTTAGTTCTAATTAACATTTGTATTGATGCAGTATTCTT GTACGAGCTACGGAATTCAAAAGCATCAAAGCTAATATGCCATGGTTGCTGGATGCCACCGTTTGCGTGACACTGGACAT TTTTGTATCCTAAACATGCATGTTTAGACACACGCAGTAAAATCATAATGAAGCCAAAATCACAGTGGACAGAAGCAAAT TTCTTTAGTTTTTGCAATTGTTCACCATGATTTTTGTCTCACCATGATTTTCCTCCGTCTATCCAAGCATACACGAAGTT CTTGATGTTAGATTTTTTTTTTTTTTTTTTGAATTTCAGTGCTCTCTGTTAACCCTGCTGTGTATACTACAGAAAAAAGT ATGATTATAACTGAAACCTTAACAACATTTGATAGATAATATCGCAGTACATCTACTATAGATACTTTCAAAAGAGAGAA AGAGAAGCAAGTGATGATAGAGACTACAAAGAAGTGGGAAAAGCTGCTGCATCTTGAATCTTGAGCTGTGTAACTCTGCC TTAACTAATTGAAGTTCAATTTGAAACATCAGTGACAATCAGCATTTTCCCTAAATTGGGCCACTATTTTTGCTTATGTT ACACTCTTCAAGGAGATGGAAGTCAACAAATATTATACAGGGATTATATGATATATTAATGTATCCATTAACATGAACTT GCTTATGACATGATCGTAGTGGCTACTCTGATATTGATGTATTGATTACAGCCAAAACATGTGAGAGACCATAGTTTCTT TATTATAATTTTCAAGACTGATGAACCACCATATTTGTGTTGGAT
CDS sequence (LotjaGi4g1v0114500.4) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCACCTTCTTACTGTGTGAATGAGAGGAAACCCTGTGTAGGATGGGTTGAGACATACTTCAATGACTGTCTTTGCAC CATGAAAGATGACATCTCGTTCAGTCTTGGACTTACCAGTTTAGCATTCTGGGGAATAGCAGAAATCCCTCAAATCATCA CCATTTTTCGCACCAAGTCCAACCATGGAATGTCCCTTGCCTTTCTCTGCACTTGGGTCGCTGGAGACATATGCAACCTG GTAGGTTGCCTTCTGGAACCAGCTACGCTGCCCACACAGTATTACACTGCATTGCTTTACATGAGCACCACGATCTTGTT AGTATCGCAAGTCATATATTTTGACTACATCAGTAGATGGTGTACACATCGTCACAACATCAACAACAAAGGGACTCATG AGGAAGAGGAAAGACCATTGAAACCGAAAGCTAGTGAGGAGTCTGAGATTCCAATACCAAATGGCACACCCAGAGCTGCA CCTAGACGAGAGTATTACTATATGTCAGCAAGGTCATTGGCTGGAAGTGCCACTCCACCCTCGCTTAGCTACATAAGAGC TGCTAGAAGTGGCCCATCAGCCATGGAATTCAACGGCGCGGACTCTTCTTCTGACGATGAAGCACCTCCACCTACCTCTG CATCTCGTTCTCTAGCTGGAAGTTATGGAACATTTCTAGCAGCATCCCTTAACTTGCCCCTGAAGAGTGATGCTTTGAGA CATTATGGATACACAGGATTTACTACAAGAAAGCTCTTACAGGGAGACGAGATACATAATGCAATTGGTCTTTGGTTGGG ATGGCTCATGGCAGCTATCTATATAAGTAGTCGTCTTCCTCAAATATGGTTAAACGGCTTAAGTCCTTTCATGTTCATCT TTGCACTGGTAGCTAATGTTACATACGTAGGAAGTATTCTTGTACGAGCTACGGAATTCAAAAGCATCAAAGCTAATATG CCATGGTTGCTGGATGCCACCGTTTGCGTGACACTGGACATTTTTATAATATCGCAGTACATCTACTATAGATACTTTCA AAAGAGAGAAAGAGAAGCAAGTGATGATAGAGACTACAAAGAAGTGGGAAAAGCTGCTGCATCTTGA
Protein sequence (LotjaGi4g1v0114500.4) extracted from Lotus japonicus Gifu v1.2 Proteins.
MAPSYCVNERKPCVGWVETYFNDCLCTMKDDISFSLGLTSLAFWGIAEIPQIITIFRTKSNHGMSLAFLCTWVAGDICNL VGCLLEPATLPTQYYTALLYMSTTILLVSQVIYFDYISRWCTHRHNINNKGTHEEEERPLKPKASEESEIPIPNGTPRAA PRREYYYMSARSLAGSATPPSLSYIRAARSGPSAMEFNGADSSSDDEAPPPTSASRSLAGSYGTFLAASLNLPLKSDALR HYGYTGFTTRKLLQGDEIHNAIGLWLGWLMAAIYISSRLPQIWLNGLSPFMFIFALVANVTYVGSILVRATEFKSIKANM PWLLDATVCVTLDIFIISQYIYYRYFQKREREASDDRDYKEVGKAAAS
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 367 | 367 | 5.9E-186 | – | |
| Phobius | 1 | 31 | 31 | - | – | |
| PANTHER | 1 | 367 | 367 | 5.9E-186 | – | |
| Gene3D | 28 | 125 | 98 | 7.8E-8 | – | |
| Phobius | 32 | 54 | 23 | - | – | |
| Pfam | 32 | 88 | 57 | 2.6E-16 | ||
| TMHMM | 34 | 56 | 23 | - | – | |
| SMART | 46 | 77 | 32 | 1.8E-8 | ||
| Phobius | 55 | 65 | 11 | - | – | |
| Phobius | 66 | 88 | 23 | - | – | |
| Phobius | 89 | 93 | 5 | - | – | |
| TMHMM | 92 | 114 | 23 | - | – | |
| Phobius | 94 | 114 | 21 | - | – | |
| Phobius | 115 | 257 | 143 | - | – | |
| MobiDBLite | 130 | 158 | 29 | - | – | |
| MobiDBLite | 130 | 145 | 16 | - | – | |
| MobiDBLite | 196 | 216 | 21 | - | – | |
| TMHMM | 258 | 276 | 19 | - | – | |
| Phobius | 258 | 277 | 20 | - | – | |
| Pfam | 263 | 313 | 51 | 5.2E-7 | ||
| SMART | 276 | 300 | 25 | 0.86 | ||
| Phobius | 278 | 288 | 11 | - | – | |
| TMHMM | 286 | 308 | 23 | - | – | |
| Phobius | 289 | 310 | 22 | - | – | |
| Phobius | 311 | 321 | 11 | - | – | |
| TMHMM | 321 | 343 | 23 | - | – | |
| Phobius | 322 | 342 | 21 | - | – | |
| Phobius | 343 | 368 | 26 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi4g1v0114500.4, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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