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| Field | Value |
|---|---|
| Gene ID | LotjaGi4g1v0114500 |
| Transcript ID | LotjaGi4g1v0114500.5 |
| Related isoforms 4 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | PQ-loop repeat family protein / transmembrane family protein; TAIR: AT4G36850.1 PQ-loop repeat family protein / transmembrane family protein; Swiss-Prot: sp|P38279|YPQ3_YEAST Probable vacuolar amino acid transporter YPQ3; TrEMBL-Plants: tr|G7LFJ3|G7LFJ3_MEDTR PQ-loop protein/transmembrane family protein; Found in the gene: LotjaGi4g1v0114500 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:16548010..16553704) extracted from Lotus japonicus Gifu genome v1.2.
TTTCACTATCACTAGTTGCGTCTCGTTGTGTCTTACTAGTGCTATTTCGGTGAGCTATGTTCCTATAAAACCAGCTCCTG CTATCTTTTCAAAGACACACCAGTGACACCACCACCTTTCCATTTCTCAGCTGAAACTCGCACACAAAAAAGAGAAAGAA GGTTAAAGATTATTATGGCACCTTCTTACTGTGTGAATGAGAGGAAACCCTGTGTAGGATGGGTTGAGACATACTTCAAT GACTGTCTTTGCACCATGAAAGATGACATCTCGTTCAGTCTTGGACTTACCAGTTTAGCATTCTGGGGAATAGCAGAAAT CCCTCAAATCATCACCATTTTTCGCACCAAGTCCAACCATGGAATGTCCCTTGCCTTTCTCTGCACTTGGGTCGCTGGGT TCGTTCCATTTTCAATTTAATTCATACACTTTTTCACTTTTTACTATTGTTGCGAAATCATTTATAGGTATCATGTTTTA CTAAATGCATGTTTGGAAACTCGTTGAAAATCCACCTAACTAAATTAAGATGTACAAAAGTAACTTTCTTATGATATAAT GGTCTTTATGAACAATGCAATTCTGGCTGCAGTGGCAATTTCAGAATTTATGAAAAAAATTAACTCTAGAGTTTGTGGCC GTTCAAAACTGTCACAAACCGTAAGTGTCGCAACTTTCACATATATTTCCATATCCATGAATCTCCACTACTGATTATGA TTTTGACTTCATTGATATTTTGAACGAGTTTATAGTACAAATGTAAAATATATGGGAACAAAGGGTTGATTAAGAATATT TTGATTTTGATGCAGAGACATATGCAACCTGGTAGGTTGCCTTCTGGAACCAGCTACGGTGAGTCACTCTGAACCAAATG AACTATTAAATGTTTTGTTTGGTTGCAAGGTGGTCCTGAAACAGAGAGCCCTGACATTCAATGCAACTGGGTGGCCTTGA TGTTCTCTGTTATCCTGATGATGCTCTGTATCATATCATCCACTACGTTCTCTACATTTTTTTCATTATTTGTGATTCTC TGGACTCACTTTTTGTCATTTTGCTGTTTGTTTTTTCCTGTTTGGATATGGATATGGATGCACGTGCTGATGCAGCTGCC CACACAGTATTACACTGCATTGGTAAATAATTGCAAGTTCCAATTTTTTGTTGTATCTTGTTCTTCTTTGCACATTGTAT ATTTCAAATGTTTATCCTGATTGAGAAATCAACTTATGTAGCTGTGATGTTATACAATAAAAAATGTTTTGTTGATTTGC TCACACTTTCCTTAGAGCGTAAAAGAAGTGGTGTCAAGCCATAGAAGAAAACGAAAGAGAGCATAAGATGTGATATATAT ATGTTATAATAAGAAAAAAAAAATTAGAAATAGTTCACAATTTGCGAAAATCATGTAAAAATATAACGAGGTATTATGAA TAAACTCATACTCCTTCTATATAGATAATAAAATTCTTTAAAACTCATTTGATTATTCAATCTAACTTGGGTACACAGGC CGAGGGAGGGGATATGCTGTTGCTATGATCCCCTAAAGCTTTTTTATTTTATTTTCTGATATATATGTATGTAAGGTGTA AAAATCATTGTAAACATGTCATATTTTTTTATCTCAGCCTCTCTTTGAACTTAGCCTCCTAATATCAAATTCCTACCTCT ATCACTAGTGTCTAGGTACATGTCTGATTTTGTTTGAGTAAGGTCTCAATTCGAGTTTTATAGATGAAAAAAATCAATGA AAAAGCTAACACCACCACGATATCAATGTTCTCACTTCTCATGATGGATACATACATATGATGTGATACACTAAAAAAAA ATTACTCAAACAACAATTGTAACTGTTGAGAAGTATCACATTAGCTTAAAATATGTTAAAGTAAGTCTTATTGTTAAGTC ATCATCGCTTTTTGGGTAGAGTATGTCCTAGCTCAAATTCTAAGATAGTATTAGAGTCTTTTCTATATCTGTTTATTGGA GGCCTCTTATATATGGGTGGTCACTTGCGGATATTTATTCCTGTAAATTTCACGTTTCATATGGTCATCCCTTGAATGTG AGAGAGGGTGTTTAAGAATCTCACATTAATTAACAATATGACTAATAAGTTCTTACTTTCTACGGATTGCTTCTTTCGCC TCTTTCACCATCAAAGTGCCTATGGTACCGGTTCATATTTGATTAGCCGAAGCTCACCCCTAAACTATCTTTTAGAGTAA AATTAAGCCCAACATACATTTTAATAGTAATATCTTACTTTACACTCTAAAATATTGTGTAAAAACAATATATGTATTTA TATAGATTTTTTTTATTCTTAGTTCGGCCCTCTTGTTAACTTCGTTTTTTATAGCAACGTTAGGCGCAGTAAGGAAAAAA AAAACTATAGGGGGGGAATTAGTAGATCTCCATATCAAGGGATGGATCTGATAAAGGAACTTGTGCAGATATTATCTCAG GGTTAAGCCTTCATTTAGGTCCAAGTTTTGGTAATTTGGGAGGAGGCACTTCTTTAAGAAAATAAAAGGCATGAGCATGA CAAGAGTTCGTGGGGGAAGAATTTACGTTAGAAGGTTGAAGCCACGCTTTTTATATGATTTACAACTACATGATGTGTCT CAAAAAGGATTGTTGGCATCTTTAAAAAATCTGTAACAGCTATTAAGGCAGTCGAAGAGACTCGCTAGTCGTTAAGGTAA ACTAGTTGTTGGAAGGACCAACCGTAGGTCTAGGTTTAGTCGATGGCATGCTAAGGTGAAATGACTAGAGGGCAAAGTCA TGAATGTGGACAAGAATTGAGGAAAGGTACATGGGCTCAATCCGGAGTTGAAGATATTTTACGGGCTTCTAGAAGATCTA CATAGTGGCAGGTGATTGTTAATTGTTGTAGGCTTGTTAAATTTGCCTCTATAAATCAAGGAAAAAACACAACTCAAACA TTTATCTTTTGCATTTAGTTGTTGACTTAGTTCATAGCTTTACCTTAGTCACAATTTCTCAATAGCGATCACTAAGAGAT TTTTAAAGTGTTTTACAAACCTACATTGAGGAACATGGTCTCTTACTCGAGTAATTACTTAATTAGAAAATCGTTACGTT GCTTTCTCAGCCGACCCACACAGCTACATAGTCACAATCTATTTGTAAACCAACAAAGATAAAATCTTTATTTAAACCAA TTAGTCCCCTATACTCAGTTGTATTAAGGTATCATTAATATTCCACCTGTTTAACCTACAAAATCACAAGATCTTAATTA GCAGTTGTTATTGTGATTAACAGCTTTACATGAGCACCACGATCTTGTTAGTATCGCAAGTCATATATTTTGACTACATC AGTAGATGGTGTACACATCGTCACAACATCAACAACAAAGGGGTACATTTCCAATTTCTTTGACTCCTAATAGAAATACT TAAGCCCTGTTTTTTGGCTAATTAATATCAAATGTCTATCTTGTAGCAGACTCATGAGGAAGAGGAAAGACCATTGAAAC CGAAAGCTAGTGAGGAGTCTGAGATTCCAATACCAAATGGCACACCCAGAGCTGCACCTAGACGAGAGTATTACTATATG TAAGAACAATTTCCTAGCAATTAGTGTCAATTGTAAAATTTAATTTGCATTTTAGAAGTAAAATTAGTTCAAATTGTTAT ATATGTGTGACATGAAAAATGAACTAAAGTGCTTGAGTTCTAATTATGCAGGTCAGCAAGGTCATTGGCTGGAAGTGCCA CTCCACCCTCGCTTAGCTACATAAGAGCTGCTAGAAGTGGCCCATCAGCCATGGAATTCAACGGCGCGGACTCTTCTTCT GACGATGAAGCACCTCCACCTACCTCTGCATCTCGTTCTCTAGCTGTGAGTCACTCACTTGTTTGCCTCAAACATGCTAC TTTCCTCCCACTTCTAAAGTTAGACTTTATACCTCTTTAGACGCTGACCAAAAAACACTAATTATCCGAGCTTATCTAGT GTTTTTTTCTCAGATAAGGTGCAATAAGTATTATTTAGTCCGTATCCGAACTGACTCTTTGTAAATTTTAATGTGTCACA CGCGTTTATTAAGTCTTACCTTGCTTTTTACGCGTACATTTCCAGGATCTTGAACCCGTGATCTCAATCATTTGACAACG GCTTTAGTCTTCTTGAGCTTAATTAGTCTTTGCCTCCTTACAGTGATGATACATATAATAATGCTATATGCTTGCTTGTG GTGCTTGACAGGGAAGTTATGGAACATTTCTAGCAGCATCCCTTAACTTGCCCCTGAAGAGTGATGCTTTGAGACATTAT GGATACACAGGATTTACTACAAGAAAGCTCTTACAGGTAACACTGACTAGTGGCACTGGTGAAATAATTAAATTGAATTA CACTCATAATTTTATCTCGTGTTTGATTTCTTAATTAATTTGCATAACTACATTTTCTAGTTTCTAGTAATTAATTAAGA TTCATGACAGGGAGACGAGATACATAATGCAATTGGTCTTTGGTTGGGATGGCTCATGGCAGCTATCTATATAAGTAGTC GTCTTCCTCAAATATGGTTAAACGTAATTCTCCAACTTCTTTTCATTATTTAATTTTGGGTTTGGAATATTATTCCTTTA TTTTGATTATATTGTTATGTCCTTATTTTTTTATCAGATTAAAAGAGGGAGTGTGGAGGTAATTTTATCTTTAAACATTC TTCTTGCCTTTTGATTATGAATTAGCATTTCTACTGATTTATACATGCTCTGTTCTGATTATTACAGGGCTTAAGTCCTT TCATGTTCATCTTTGCACTGGTAGCTAATGTTACATACGTAGGAAGGTTCAATTTAATTCCCTCCTTCTGCATAAATCTG GTCCTAATTCTCCAAATTATGTGAAGTTATTTAGTTCTAATTAACATTTGTATTGATGCAGTATTCTTGTACGAGCTACG GAATTCAAAAGCATCAAAGCTAATATGCCATGGTTGCTGGATGCCACCGTTTGCGTGACACTGGACATTTTTGTATCCTA AACATGCATGTTTAGACACACGCAGTAAAATCATAATGAAGCCAAAATCACAGTGGACAGAAGCAAATTTCTTTAGTTTT TGCAATTGTTCACCATGATTTTTGTCTCACCATGATTTTCCTCCGTCTATCCAAGCATACACGAAGTTCTTGATGTTAGA TTTTTTTTTTTTTTTTTTGAATTTCAGTGCTCTCTGTTAACCCTGCTGTGTATACTACAGAAAAAAGTATGATTATAACT GAAACCTTAACAACATTTGATAGATAATATCGCAGTACATCTACTATAGATACTTTCAAAAGAGAGAAAGAGAAGCAAGT GATGATAGAGACTACAAAGAAGTGGGAAAAGCTGCTGCATCTTGAATCTTGAGCTGTGTAACTCTGCCTTAACTAATTGA AGTTCAATTTGAAACATCAGTGACAATCAGCATTTTCCCTAAATTGGGCCACTATTTTTGCTTATGTTACACTCTTCAAG GAGATGGAAGTCAACAAATATTATACAGGGATTATATGATATATTAATGTATCCATTAACATGAACTTGCTTATGACATG ATCGTAGTGGCTACTCTGATATTGATGTATTGATTACAGCCAAAACATGTGAGAGACCATAGTTTCTTTATTATAATTTT CAAGACTGATGAACC
CDS sequence (LotjaGi4g1v0114500.5) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCACCTTCTTACTGTGTGAATGAGAGGAAACCCTGTGTAGGATGGGTTGAGACATACTTCAATGACTGTCTTTGCAC CATGAAAGATGACATCTCGTTCAGTCTTGGACTTACCAGTTTAGCATTCTGGGGAATAGCAGAAATCCCTCAAATCATCA CCATTTTTCGCACCAAGTCCAACCATGGAATGTCCCTTGCCTTTCTCTGCACTTGGGTCGCTGGAGACATATGCAACCTG GTAGGTTGCCTTCTGGAACCAGCTACGCTGCCCACACAGTATTACACTGCATTGCTTTACATGAGCACCACGATCTTGTT AGTATCGCAAGTCATATATTTTGACTACATCAGTAGATGGTGTACACATCGTCACAACATCAACAACAAAGGGCAGACTC ATGAGGAAGAGGAAAGACCATTGAAACCGAAAGCTAGTGAGGAGTCTGAGATTCCAATACCAAATGGCACACCCAGAGCT GCACCTAGACGAGAGTATTACTATATGTCAGCAAGGTCATTGGCTGGAAGTGCCACTCCACCCTCGCTTAGCTACATAAG AGCTGCTAGAAGTGGCCCATCAGCCATGGAATTCAACGGCGCGGACTCTTCTTCTGACGATGAAGCACCTCCACCTACCT CTGCATCTCGTTCTCTAGCTGGAAGTTATGGAACATTTCTAGCAGCATCCCTTAACTTGCCCCTGAAGAGTGATGCTTTG AGACATTATGGATACACAGGATTTACTACAAGAAAGCTCTTACAGGGAGACGAGATACATAATGCAATTGGTCTTTGGTT GGGATGGCTCATGGCAGCTATCTATATAAGTAGTCGTCTTCCTCAAATATGGTTAAACATTAAAAGAGGGAGTGTGGAGG GCTTAAGTCCTTTCATGTTCATCTTTGCACTGGTAGCTAATGTTACATACGTAGGAAGTATTCTTGTACGAGCTACGGAA TTCAAAAGCATCAAAGCTAATATGCCATGGTTGCTGGATGCCACCGTTTGCGTGACACTGGACATTTTTATAATATCGCA GTACATCTACTATAGATACTTTCAAAAGAGAGAAAGAGAAGCAAGTGATGATAGAGACTACAAAGAAGTGGGAAAAGCTG CTGCATCTTGA
Protein sequence (LotjaGi4g1v0114500.5) extracted from Lotus japonicus Gifu v1.2 Proteins.
MAPSYCVNERKPCVGWVETYFNDCLCTMKDDISFSLGLTSLAFWGIAEIPQIITIFRTKSNHGMSLAFLCTWVAGDICNL VGCLLEPATLPTQYYTALLYMSTTILLVSQVIYFDYISRWCTHRHNINNKGQTHEEEERPLKPKASEESEIPIPNGTPRA APRREYYYMSARSLAGSATPPSLSYIRAARSGPSAMEFNGADSSSDDEAPPPTSASRSLAGSYGTFLAASLNLPLKSDAL RHYGYTGFTTRKLLQGDEIHNAIGLWLGWLMAAIYISSRLPQIWLNIKRGSVEGLSPFMFIFALVANVTYVGSILVRATE FKSIKANMPWLLDATVCVTLDIFIISQYIYYRYFQKREREASDDRDYKEVGKAAAS
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 31 | 31 | - | – | |
| PANTHER | 1 | 375 | 375 | 2.9E-194 | – | |
| PANTHER | 1 | 375 | 375 | 2.9E-194 | – | |
| Gene3D | 28 | 125 | 98 | 8.1E-8 | – | |
| Pfam | 32 | 88 | 57 | 2.6E-16 | ||
| Phobius | 32 | 54 | 23 | - | – | |
| TMHMM | 34 | 56 | 23 | - | – | |
| SMART | 46 | 77 | 32 | 1.8E-8 | ||
| Phobius | 55 | 65 | 11 | - | – | |
| Phobius | 66 | 88 | 23 | - | – | |
| Phobius | 89 | 93 | 5 | - | – | |
| TMHMM | 92 | 114 | 23 | - | – | |
| Phobius | 94 | 114 | 21 | - | – | |
| Phobius | 115 | 258 | 144 | - | – | |
| MobiDBLite | 130 | 159 | 30 | - | – | |
| MobiDBLite | 130 | 146 | 17 | - | – | |
| MobiDBLite | 196 | 217 | 22 | - | – | |
| MobiDBLite | 197 | 217 | 21 | - | – | |
| Phobius | 259 | 278 | 20 | - | – | |
| TMHMM | 262 | 284 | 23 | - | – | |
| Gene3D | 263 | 368 | 106 | 1.0E-6 | – | |
| Pfam | 264 | 321 | 58 | 1.4E-17 | ||
| SMART | 277 | 308 | 32 | 9.4E-10 | ||
| Phobius | 279 | 297 | 19 | - | – | |
| TMHMM | 294 | 316 | 23 | - | – | |
| Phobius | 298 | 318 | 21 | - | – | |
| Phobius | 319 | 329 | 11 | - | – | |
| TMHMM | 329 | 351 | 23 | - | – | |
| Phobius | 330 | 350 | 21 | - | – | |
| Phobius | 351 | 376 | 26 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi4g1v0114500.5, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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