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| Field | Value |
|---|---|
| Gene ID | LotjaGi4g1v0115600 |
| Transcript ID | LotjaGi4g1v0115600.1 |
| Related isoforms 2 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Zinc finger protein; TAIR: AT5G66730.1 C2H2-like zinc finger protein; Swiss-Prot: sp|Q9LVQ7|IDD1_ARATH Protein indeterminate-domain 1; TrEMBL-Plants: tr|A0A1J7HX60|A0A1J7HX60_LUPAN Uncharacterized protein; Found in the gene: LotjaGi4g1v0115600 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:16753250..16756586) extracted from Lotus japonicus Gifu genome v1.2.
TTTATAATTAACTATCTGTTTAGTGCGAGCACTTTCACCGTAATATTATTTATTATTTATTGTAGGGCTAAATAAACAAG TAAACTTTGCAGGTTGACTGATGGATATAGACAGAGAGAGGGGGAAAGAAAGAGAGAAGATACTTATTAGTTATTACTCA TTAGAGTGGAAAATAGAAACCCTAGAAATCAGAAGAAAAAAAAAAACCAAAACTTTATCCCCAAACCCAAAAAAGTTGCT TTGGGAATCCAAGTGTAAATGCCCCTAAGATTTTCCCTCTTTGTCAATAGATTGTCCAGTAAGGAAGAACCATTGTTCAA GAGTTTCTAGGAAGAAGCGTTTTCCTCCATGCCTGTTGATTTTGACAATGTTTCCACACCTTCAGGGGAAGCACCTAGTG TTTCTTCCTCTGGTAATCAACCACCACAACCCACAACCAAGAAAAAACGAAACCTTCCTGGAATGCCAGGTACCCAAATG AAAAAACCATCCAAATCTTCATCAACAAGCTTCTGATTTCATTGATTTTGATTTTTCAAATTTGACATAATTTTCACTGT TTTTTTGATGTTTCAGATCCAGAAGCAGAGGTGATTGCTCTGTCACCGAAGACTCTAATGGCGACGAACAGATTCGTATG CGAAATTTGCAACAAAGGGTTTCAGAGGGACCAGAATCTGCAGCTTCACCGGAGAGGTCACAATCTGCCATGGAAGCTGA GGCAGAGGACGAGCAAGGAGGTGAGGAAGAGGGTGTATGTCTGCCCGGAACCAACGTGTGTCCACCATGACCCTTCTCGA GCGTTGGGTGATCTCACCGGAATTAAAAAGCACTTCTGCAGAAAGCACGGTGAGAAGAAGTGGAAATGCGAGAAATGCTC CAAGAAATATGCAGTTCAATCTGATTGGAAAGCTCACTCCAAGGTTTGCGGTACCAGAGAGTATAAATGTGACTGCGGCA CGGTGTTTTCGAGGTTCTTGTTCATCTTCTTGTGCTTTGTTTTGTTCACTCGTTGATTCTGTTTCTTTCTAGTGTGTGTT TCTGAAATGGGATTTGGTTTGGTTTTGATTTGAAGGAGGGATAGCTTCATTACTCATAGAGCTTTTTGCGATGCGTTGGC AGAGGAGAGTACAAGATCTCAGACTCAGAAGGCGAATTCGGAGTCTGAATCGAAGGTTTTAACGGCTGATTCTTCACCGC CGCCAGCTGCTGCCACTGCCGCCGCCGCTAATGCTTCTACTACTCAGTCAAATAGTGGCATTTCCTCTGCTTTGCAGACA CAGAACCTAGGTAGATCAAATCAAACAGAATCTGGAAAATGTGCAATGTTTTTTTTTTGTCTGGTGTGATGTGGTTAAAA GTAGACAATTACAAAATCAAAACTATGATGTTTTTTGTCTCTGATCTTGGAGCTTAGTAGTTTTTTGTCTGGTTTCGTTT TTTGGTATGATGGGTGTCATCAAGTGATCTGAGATTGTGGGAGCTAATTAAGTAATGAAAATAAACCACTTAAAAAGGTG TTTGTTCTTTGGGATTGTTGTGATGAGATCTAAATTATGCACATAGCTGACAAAGAAACTTCAAAAAGATTCAAAAGCTA AAAAGAGAAAAGATTTGTTTAAAGGGAGGAAAAAAACTATTATTTTGTTCATTACTTCCTGCTATGCACTTTAAGATAAA ACAAAGGCACTAACTTTCTTCAAGTCTAGGTGCATGTTTTAAGTGGCTGCTTTTGCTCTTTCTTTTGTTCTCCTACTAAT TGATGATAATTACTCATTACAATAGTGTTATTGTTGCTTTTGCATCATCTTATTCTCCTTTCTGATGTTTCAGAGTTGCC TGAAAATCCCCAACAAATCAGAGAGGAACCACAAGCTGTTGTTGCTACTGCTGCTTTAAATGGGAGCTGCAGCAGCAGCA GCTGCACCACCACAATCACTGCCACTACCAGCTCCACCTCAATTGCCAATGGTAGTGGTGCTACTAATAATAGCTGTAGT GTGTTTGCAAGCTTGTTTGCCTCCTCAACCGCATCTGGGAGCCTGCACTCTCAAGCACAGCCAGCATTCACGGACCTAAT TAGAGCCATGGGATGTCCCGACCGCCCTGCAGACCTCTCCCTCCCGGCTCCTTCGTCATCTGAGGCCATATCTCTCTGCC TCTCCACCAATCACGGACCATCCATTTTCGGAACTGGAGGGCAGCTGGAGTACCGCCAGTACATGCCATCGCCGCAGCCG CCAGCCATGTCCGCCACTGCATTGCTGCAGAAGGCTGCTCAGATGGATGCTGCCGCCACAAATGCCTCATTGCTTCGCGG GTTGGGCATTGTGTCATCGTCTTCAGCGGCTTCAACTTCATCCGGCCAGCAAGATAGCCTGCAATGGGGTCAGGTGAAAG TGGAGCGGGATAGTGATGGGTTTCCTTCCGGGCTTGGACTTGGGCTTCCTAGTGATGGCGGTTCAGGACTGAAGGAATTG ATGATGGGGACACCTACGGTGTTCGGTGATCCTAAGCAGACCACCCTTGATTTCCTAGGATTGGGGATGGCTGTGGGTGG CAGTTCTGGTGGAGGCATATCTGCACTCATGACATCTATTAGTGGCGGTTTCGATGTTACGACATCATTTGGTAATGGAG GAGAGTTCTCTGGCAAGGACATTGGGAGGAGCTCATGATTTTTTTTTGGAATGCGGGAGGAGCTCATGATAATTGCATGA ACAAATTCTATTAGTGCCCTTGGTTTTCACTCTTATGGACCCATTTCTTGTGCTGAAACCACTTTTAGCAAGATGAAGCT ATAATAGGTAGCTAGCTTTAGGGACAAACGTTCTGTAGTAAAGCATGAAGATTGAAGTGTAACCAAACACACCAAATTTA TCTGGGCCCAAATTTTTGGTTTTAGAGTTACATGTTAGATTTTTTGTGCAATCTGAAGTTGCAATGCTTTAGGGAAGGGT CTATAAATTATGGATATGATGTGAAGTTATGGAGCAATGCAACAACAAATACACAAATGTGAGTCTTTGGAATGTCTTAC CTTCCCTTTCTAATGCGAGGGAAAAGAAAGTTATGTTATGGAAAAAGGTTCATTTACTGGCACAAGTTACAATATGGTTG CTATAAAAACGACACTGTGGTGAGTTACTACAATATCTTGTTTTGGGTTCTTGAGTGTCTACAGTTTTGATGAATTTATG GATTCCGCCATTGAATGATTTGGTACGTAGATGTAGGCATAAATCAGGAAACTTTAATGTAGATTTGCTTTCTCCATCCG TTGAATTATTGACTCACGAGGTGGATTTCCACGTATGCCCCTTATTTGGCAATTAAT
CDS sequence (LotjaGi4g1v0115600.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCGACGAACAGATTCGTATGCGAAATTTGCAACAAAGGGTTTCAGAGGGACCAGAATCTGCAGCTTCACCGGAGAGG TCACAATCTGCCATGGAAGCTGAGGCAGAGGACGAGCAAGGAGGTGAGGAAGAGGGTGTATGTCTGCCCGGAACCAACGT GTGTCCACCATGACCCTTCTCGAGCGTTGGGTGATCTCACCGGAATTAAAAAGCACTTCTGCAGAAAGCACGGTGAGAAG AAGTGGAAATGCGAGAAATGCTCCAAGAAATATGCAGTTCAATCTGATTGGAAAGCTCACTCCAAGGTTTGCGGTACCAG AGAGTATAAATGTGACTGCGGCACGGTGTTTTCGAGGTTCTTGTTCATCTTCTTGTGCTTTGTTTTGTTCACTCGTTGA
Protein sequence (LotjaGi4g1v0115600.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MATNRFVCEICNKGFQRDQNLQLHRRGHNLPWKLRQRTSKEVRKRVYVCPEPTCVHHDPSRALGDLTGIKKHFCRKHGEK KWKCEKCSKKYAVQSDWKAHSKVCGTREYKCDCGTVFSRFLFIFLCFVLFTR
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 119 | 119 | 9.2E-106 | – | |
| Phobius | 1 | 113 | 113 | - | – | |
| PANTHER | 1 | 119 | 119 | 9.2E-106 | – | |
| SUPERFAMILY | 5 | 102 | 98 | 1.34E-7 | ||
| Pfam | 6 | 28 | 23 | 2.4E-5 | ||
| ProSiteProfiles | 6 | 28 | 23 | 10.949 | ||
| SMART | 6 | 28 | 23 | 0.017 | ||
| ProSitePatterns | 8 | 28 | 21 | - | ||
| SMART | 47 | 77 | 31 | 190.0 | ||
| SMART | 82 | 102 | 21 | 140.0 | ||
| Phobius | 114 | 131 | 18 | - | – | |
| Phobius | 132 | 132 | 1 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Nucleic acid binding | Interacting selectively and non-covalently with any nucleic acid. |
Expression pattern of LotjaGi4g1v0115600.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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