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| Field | Value |
|---|---|
| Gene ID | LotjaGi4g1v0115700 |
| Transcript ID | LotjaGi4g1v0115700.1 |
| Related isoforms 2 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Sugar transporter, putative; TAIR: AT4G36670.1 Major facilitator superfamily protein; Swiss-Prot: sp|Q8GXR2|PLT6_ARATH Probable polyol transporter 6; TrEMBL-Plants: tr|Q1XF10|Q1XF10_LOTJA Putative polyol transporter 1; Found in the gene: LotjaGi4g1v0115700 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:16786303..16788650) extracted from Lotus japonicus Gifu genome v1.2.
ATTGCTTTGGAGCCACAATCTCTCAATTCTTTTAGCCAGAGAGGAAGAGAAAGCCTTTCATATATCATCAATATAATGGA ACATGGTGATGGTAAAGAAGACCAGAACATCACGAAGATCAACAAATATGCCTTGGCGTGTGCCATAGTCGCTTCAATGG TATCCATCATATCTGGCTATGGTACGTAATATTGCGTTTGCTCTCAATCTTTCATCTAGTGATTTTATTTTTCTAATGCA AACTTGTCTTTCCTTACAAAAAAAGTCTCTACAGCACTAAGTACTGTTGTATATTCGAATTTGAGTTAAAACTAACCCTA TAATAGAGTGATTAGGGTTGTTCTACCTTTTATAGAGATAACTTATTTGAATATATATCTAATTAATTTGAAATTTGTTA ATACACCTCTCACACTCAAAAGATGAGATTGAAGATCTGTGAATAACTCATATATGACTATATGAGTGGTCTCCAATAAA TATATTTAGGACATGTTCTAATATTATCTTAGAAATTGAATCATAAGTTCATTGTTTTATCATTTATAAGGACATACTTA ACTATAGTTATAGTGATTATGTGACTTCTCAACGGTAAATATATGTGATTTTGACCATAAATTTTCTCTATCAAAATTTA AGTGAAGAATTTGATAATGATTCTCAATATTACTCTTGTTTTATCTACAGGGTCATCTAGAATGAGATGTTGTAAACTAA ATTTTTCCTTGTCTTTTATAATATCTAAGATTTTGGATAAATGCACACCTTGTAATTAATACACACCTTATTTTGATTTC AGATACTGGTGTTATGAGTGGAGCCATGCTATTCATAAAGGAAGATATGGAAATAAGTGATACCCAACAAGAGGTTCTAG CTGGAATCTTAAACCTTTGTGCATTGGTGGGATCTTTAGTTGCTGGAAGAACGTCTGATTACATTGGTCGTCGCTACACA ATCTTCTTGGCTTCTGTTCTCTTCATGCTAGGTGCAGTTCTCATGGGGTATGGCCCAAACTATACAATTTTAATGGTGGG AAGGTGTGTTGGTGGCTTGGGTGTGGGTTTTGCGCTTATGATAGCACCAGTTTACTCAGCAGAGATTTCCTCAGCATCAT CTCGAGGTTTTCTAACCTCCTTACCTGAGTTTTGTATTGGAATTGGAATCCTGCTTGGATATATCTCAAACTACTTCTTG GGAAAATTGACTTTGAAGCTAGGATGGAGATTAATGCTTGGAATTGCAGCATTACCTTCGCTTGCCTTGTCTTTGGGCAT TCTAACAATGCCAGAGTCTCCAAGATGGTTGGTGATGCAAGGTCGTCTAGGAAGCGCCAAGAAGGTCCTTTTGCAAGTTT CTAATACCACGCAAGAGGCTGAACTTCGTTTCAGAGAAATAAAAGTTGCTGCTGGGTTTGATGAGAATTGCAATGATGAG ATTGTGAAACAACCTCAAAAGTCTCACCTCGGTGAAGGTGTTTGGAAAGAGTTGCTTCTGAGACCCACACCACCTGTTCG TTGGATGCTGATTGCGGCGGTTGGAATTCACTTCTTTGAACATGCAACTGGCATTGAAGCTGTGATGTTATATAGCCCAA GAATCTTTAAGAAAGCTGGTGTTACAAACAAGGATAAGCTCTTACTAGCAACAATTGGAGTAGGCCTTACAAAAATTACT TTTCTTATAATAGCCTCATTTTTGCTAGACAAAGTTGGTAGAAGACGCCTCTTGCAAATAAGCACGGGAGGAATGGTTTG TGCACTAACACTTCTAGGTTTCAGCTTGACTATGGTGGACCATTCCAACGAAAAGCTCTTGTGGGCCTTGAGCCTGAGTA TTTTGGCAACGTACTCCTATGTTGCTTTCTTTAATATTGGGCTTGGGCCTGTGACATGGGTGTATAGTTCAGAGATATTT CCTTTGAGGTTGAGAGCACAAGGAGCTAGCATAGGAGTTGCGGTGAACAGGTCCATGAATGCTACAGTCTCTATGAGTTT TATTTCGATCTACAAAGCAATCACTATAGGTGGGAGTTTTTTCATGTTTGCTGGCATATCTGTCTTAGCTTGGGTGTTCT TCTACATTTTCCTCCCAGAAACCAAGGGCGTGGCCTTAGAAGAAATAGAGATGATTTTCAGCAAAAAACCTAGTGGTAAA AATGTAGCAACATAATCGGAGACAAGATATAATGCTAGTGTGTTTTTGTATTTTATATCAAGCTAGTGCATGCATTCTAT TAAAAATTTCATTGTACAAAGTCGATTTGATGAACCTTTTACCAAATGCTATAACAATCAACAGGGCCGGTCCCGACATT TTGGAGGCCTTGGGTAAATAATAAAAAT
CDS sequence (LotjaGi4g1v0115700.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGAACATGGTGATGGTAAAGAAGACCAGAACATCACGAAGATCAACAAATATGCCTTGGCGTGTGCCATAGTCGCTTC AATGGTATCCATCATATCTGGCTATGATACTGGTGTTATGAGTGGAGCCATGCTATTCATAAAGGAAGATATGGAAATAA GTGATACCCAACAAGAGGTTCTAGCTGGAATCTTAAACCTTTGTGCATTGGTGGGATCTTTAGTTGCTGGAAGAACGTCT GATTACATTGGTCGTCGCTACACAATCTTCTTGGCTTCTGTTCTCTTCATGCTAGGTGCAGTTCTCATGGGGTATGGCCC AAACTATACAATTTTAATGGTGGGAAGGTGTGTTGGTGGCTTGGGTGTGGGTTTTGCGCTTATGATAGCACCAGTTTACT CAGCAGAGATTTCCTCAGCATCATCTCGAGGTTTTCTAACCTCCTTACCTGAGTTTTGTATTGGAATTGGAATCCTGCTT GGATATATCTCAAACTACTTCTTGGGAAAATTGACTTTGAAGCTAGGATGGAGATTAATGCTTGGAATTGCAGCATTACC TTCGCTTGCCTTGTCTTTGGGCATTCTAACAATGCCAGAGTCTCCAAGATGGTTGGTGATGCAAGGTCGTCTAGGAAGCG CCAAGAAGGTCCTTTTGCAAGTTTCTAATACCACGCAAGAGGCTGAACTTCGTTTCAGAGAAATAAAAGTTGCTGCTGGG TTTGATGAGAATTGCAATGATGAGATTGTGAAACAACCTCAAAAGTCTCACCTCGGTGAAGGTGTTTGGAAAGAGTTGCT TCTGAGACCCACACCACCTGTTCGTTGGATGCTGATTGCGGCGGTTGGAATTCACTTCTTTGAACATGCAACTGGCATTG AAGCTGTGATGTTATATAGCCCAAGAATCTTTAAGAAAGCTGGTGTTACAAACAAGGATAAGCTCTTACTAGCAACAATT GGAGTAGGCCTTACAAAAATTACTTTTCTTATAATAGCCTCATTTTTGCTAGACAAAGTTGGTAGAAGACGCCTCTTGCA AATAAGCACGGGAGGAATGGTTTGTGCACTAACACTTCTAGGTTTCAGCTTGACTATGGTGGACCATTCCAACGAAAAGC TCTTGTGGGCCTTGAGCCTGAGTATTTTGGCAACGTACTCCTATGTTGCTTTCTTTAATATTGGGCTTGGGCCTGTGACA TGGGTGTATAGTTCAGAGATATTTCCTTTGAGGTTGAGAGCACAAGGAGCTAGCATAGGAGTTGCGGTGAACAGGTCCAT GAATGCTACAGTCTCTATGAGTTTTATTTCGATCTACAAAGCAATCACTATAGGTGGGAGTTTTTTCATGTTTGCTGGCA TATCTGTCTTAGCTTGGGTGTTCTTCTACATTTTCCTCCCAGAAACCAAGGGCGTGGCCTTAGAAGAAATAGAGATGATT TTCAGCAAAAAACCTAGTGGTAAAAATGTAGCAACATAA
Protein sequence (LotjaGi4g1v0115700.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MEHGDGKEDQNITKINKYALACAIVASMVSIISGYDTGVMSGAMLFIKEDMEISDTQQEVLAGILNLCALVGSLVAGRTS DYIGRRYTIFLASVLFMLGAVLMGYGPNYTILMVGRCVGGLGVGFALMIAPVYSAEISSASSRGFLTSLPEFCIGIGILL GYISNYFLGKLTLKLGWRLMLGIAALPSLALSLGILTMPESPRWLVMQGRLGSAKKVLLQVSNTTQEAELRFREIKVAAG FDENCNDEIVKQPQKSHLGEGVWKELLLRPTPPVRWMLIAAVGIHFFEHATGIEAVMLYSPRIFKKAGVTNKDKLLLATI GVGLTKITFLIIASFLLDKVGRRRLLQISTGGMVCALTLLGFSLTMVDHSNEKLLWALSLSILATYSYVAFFNIGLGPVT WVYSSEIFPLRLRAQGASIGVAVNRSMNATVSMSFISIYKAITIGGSFFMFAGISVLAWVFFYIFLPETKGVALEEIEMI FSKKPSGKNVAT
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 19 | 19 | - | – | |
| PANTHER | 10 | 489 | 480 | 1.8E-224 | – | |
| PANTHER | 10 | 489 | 480 | 1.8E-224 | – | |
| Gene3D | 11 | 485 | 475 | 1.1E-125 | – | |
| SUPERFAMILY | 11 | 478 | 468 | 1.57E-66 | ||
| TIGRFAM | 17 | 477 | 461 | 5.0E-101 | ||
| Phobius | 20 | 47 | 28 | - | – | |
| TMHMM | 21 | 40 | 20 | - | – | |
| ProSiteProfiles | 22 | 470 | 449 | 50.043 | ||
| Pfam | 22 | 481 | 460 | 2.2E-107 | ||
| CDD | 25 | 477 | 453 | 0.0 | – | |
| PRINTS | 30 | 40 | 11 | 7.0E-21 | ||
| Phobius | 48 | 58 | 11 | - | – | |
| Phobius | 59 | 76 | 18 | - | – | |
| TMHMM | 60 | 77 | 18 | - | – | |
| ProSitePatterns | 76 | 93 | 18 | - | ||
| Phobius | 77 | 87 | 11 | - | – | |
| Phobius | 88 | 105 | 18 | - | – | |
| TMHMM | 89 | 106 | 18 | - | – | |
| Phobius | 106 | 110 | 5 | - | – | |
| TMHMM | 111 | 133 | 23 | - | – | |
| Phobius | 111 | 133 | 23 | - | – | |
| PRINTS | 113 | 132 | 20 | 7.0E-21 | ||
| ProSitePatterns | 118 | 143 | 26 | - | ||
| Phobius | 134 | 144 | 11 | - | – | |
| Phobius | 145 | 163 | 19 | - | – | |
| TMHMM | 145 | 167 | 23 | - | – | |
| Phobius | 164 | 174 | 11 | - | – | |
| Phobius | 175 | 198 | 24 | - | – | |
| TMHMM | 177 | 199 | 23 | - | – | |
| Phobius | 199 | 314 | 116 | - | – | |
| TMHMM | 278 | 300 | 23 | - | – | |
| PRINTS | 288 | 298 | 11 | 7.0E-21 | ||
| Phobius | 315 | 336 | 22 | - | – | |
| TMHMM | 315 | 337 | 23 | - | – | |
| ProSitePatterns | 333 | 350 | 18 | - | ||
| Phobius | 337 | 347 | 11 | - | – | |
| TMHMM | 344 | 366 | 23 | - | – | |
| Phobius | 348 | 367 | 20 | - | – | |
| Phobius | 368 | 373 | 6 | - | – | |
| Phobius | 374 | 396 | 23 | - | – | |
| TMHMM | 381 | 403 | 23 | - | – | |
| PRINTS | 382 | 403 | 22 | 7.0E-21 | ||
| Phobius | 397 | 415 | 19 | - | – | |
| PRINTS | 405 | 417 | 13 | 7.0E-21 | ||
| Phobius | 416 | 436 | 21 | - | – | |
| Phobius | 437 | 447 | 11 | - | – | |
| TMHMM | 444 | 466 | 23 | - | – | |
| Phobius | 448 | 466 | 19 | - | – | |
| Phobius | 467 | 492 | 26 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Cellular component | Membrane | A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. | ||
| Cellular component | Integral component of membrane | The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. | ||
| Molecular function | Transmembrane transporter activity | Enables the transfer of a substance, usually a specific substance or a group of related substances, from one side of a membrane to the other. | ||
| Biological process | Transmembrane transport | The process in which a solute is transported across a lipid bilayer, from one side of a membrane to the other. |
Expression pattern of LotjaGi4g1v0115700.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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