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| Field | Value |
|---|---|
| Gene ID | LotjaGi4g1v0115700 |
| Transcript ID | LotjaGi4g1v0115700.3 |
| Related isoforms 2 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Sugar transporter, putative; TAIR: AT4G36670.1 Major facilitator superfamily protein; Swiss-Prot: sp|Q8GXR2|PLT6_ARATH Probable polyol transporter 6; TrEMBL-Plants: tr|G7LEU7|G7LEU7_MEDTR Polyol/monosaccharide transporter 1; Found in the gene: LotjaGi4g1v0115700 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:16787004..16788494) extracted from Lotus japonicus Gifu genome v1.2.
ATGAGATGTTGTAAACTAAATTTTTCCTTGTCTTTTATAATATCTAAGATTTTGGATAAATGCACACCTTGTAATTAATA CACACCTTATTTTGATTTCAGATACTGGTGTTATGAGTGGAGCCATGCTATTCATAAAGGAAGATATGGAAATAAGTGAT ACCCAACAAGAGGTTCTAGCTGGAATCTTAAACCTTTGTGCATTGGTGGGATCTTTAGTTGCTGGAAGAACGTCTGATTA CATTGGTCGTCGCTACACAATCTTCTTGGCTTCTGTTCTCTTCATGCTAGGTGCAGTTCTCATGGGGTATGGCCCAAACT ATACAATTTTAATGGTGGGAAGGTGTGTTGGTGGCTTGGGTGTGGGTTTTGCGCTTATGATAGCACCAGTTTACTCAGCA GAGATTTCCTCAGCATCATCTCGAGGTTTTCTAACCTCCTTACCTGAGTTTTGTATTGGAATTGGAATCCTGCTTGGATA TATCTCAAACTACTTCTTGGGAAAATTGACTTTGAAGCTAGGATGGAGATTAATGCTTGGAATTGCAGCATTACCTTCGC TTGCCTTGTCTTTGGGCATTCTAACAATGCCAGAGTCTCCAAGATGGTTGGTGATGCAAGGTCGTCTAGGAAGCGCCAAG AAGGTCCTTTTGCAAGTTTCTAATACCACGCAAGAGGCTGAACTTCGTTTCAGAGAAATAAAAGTTGCTGCTGGGTTTGA TGAGAATTGCAATGATGAGATTGTGAAACAACCTCAAAAGTCTCACCTCGGTGAAGGTGTTTGGAAAGAGTTGCTTCTGA GACCCACACCACCTGTTCGTTGGATGCTGATTGCGGCGGTTGGAATTCACTTCTTTGAACATGCAACTGGCATTGAAGCT GTGATGTTATATAGCCCAAGAATCTTTAAGAAAGCTGGTGTTACAAACAAGGATAAGCTCTTACTAGCAACAATTGGAGT AGGCCTTACAAAAATTACTTTTCTTATAATAGCCTCATTTTTGCTAGACAAAGTTGGTAGAAGACGCCTCTTGCAAATAA GCACGGGAGGAATGGTTTGTGCACTAACACTTCTAGGTTTCAGCTTGACTATGGTGGACCATTCCAACGAAAAGCTCTTG TGGGCCTTGAGCCTGAGTATTTTGGCAACGTACTCCTATGTTGCTTTCTTTAATATTGGGCTTGGGCCTGTGACATGGGT GTATAGTTCAGAGATATTTCCTTTGAGGTTGAGAGCACAAGGAGCTAGCATAGGAGTTGCGGTGAACAGGTCCATGAATG CTACAGTCTCTATGAGTTTTATTTCGATCTACAAAGCAATCACTATAGGTGGGAGTTTTTTCATGTTTGCTGGCATATCT GTCTTAGCTTGGGTGTTCTTCTACATTTTCCTCCCAGAAACCAAGGGCGTGGCCTTAGAAGAAATAGAGATGATTTTCAG CAAAAAACCTAGTGGTAAAAATGTAGCAACATAATCGGAGACAAGATATAA
CDS sequence (LotjaGi4g1v0115700.3) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGAGTGGAGCCATGCTATTCATAAAGGAAGATATGGAAATAAGTGATACCCAACAAGAGGTTCTAGCTGGAATCTTAAA CCTTTGTGCATTGGTGGGATCTTTAGTTGCTGGAAGAACGTCTGATTACATTGGTCGTCGCTACACAATCTTCTTGGCTT CTGTTCTCTTCATGCTAGGTGCAGTTCTCATGGGGTATGGCCCAAACTATACAATTTTAATGGTGGGAAGGTGTGTTGGT GGCTTGGGTGTGGGTTTTGCGCTTATGATAGCACCAGTTTACTCAGCAGAGATTTCCTCAGCATCATCTCGAGGTTTTCT AACCTCCTTACCTGAGTTTTGTATTGGAATTGGAATCCTGCTTGGATATATCTCAAACTACTTCTTGGGAAAATTGACTT TGAAGCTAGGATGGAGATTAATGCTTGGAATTGCAGCATTACCTTCGCTTGCCTTGTCTTTGGGCATTCTAACAATGCCA GAGTCTCCAAGATGGTTGGTGATGCAAGGTCGTCTAGGAAGCGCCAAGAAGGTCCTTTTGCAAGTTTCTAATACCACGCA AGAGGCTGAACTTCGTTTCAGAGAAATAAAAGTTGCTGCTGGGTTTGATGAGAATTGCAATGATGAGATTGTGAAACAAC CTCAAAAGTCTCACCTCGGTGAAGGTGTTTGGAAAGAGTTGCTTCTGAGACCCACACCACCTGTTCGTTGGATGCTGATT GCGGCGGTTGGAATTCACTTCTTTGAACATGCAACTGGCATTGAAGCTGTGATGTTATATAGCCCAAGAATCTTTAAGAA AGCTGGTGTTACAAACAAGGATAAGCTCTTACTAGCAACAATTGGAGTAGGCCTTACAAAAATTACTTTTCTTATAATAG CCTCATTTTTGCTAGACAAAGTTGGTAGAAGACGCCTCTTGCAAATAAGCACGGGAGGAATGGTTTGTGCACTAACACTT CTAGGTTTCAGCTTGACTATGGTGGACCATTCCAACGAAAAGCTCTTGTGGGCCTTGAGCCTGAGTATTTTGGCAACGTA CTCCTATGTTGCTTTCTTTAATATTGGGCTTGGGCCTGTGACATGGGTGTATAGTTCAGAGATATTTCCTTTGAGGTTGA GAGCACAAGGAGCTAGCATAGGAGTTGCGGTGAACAGGTCCATGAATGCTACAGTCTCTATGAGTTTTATTTCGATCTAC AAAGCAATCACTATAGGTGGGAGTTTTTTCATGTTTGCTGGCATATCTGTCTTAGCTTGGGTGTTCTTCTACATTTTCCT CCCAGAAACCAAGGGCGTGGCCTTAGAAGAAATAGAGATGATTTTCAGCAAAAAACCTAGTGGTAAAAATGTAGCAACAT AA
Protein sequence (LotjaGi4g1v0115700.3) extracted from Lotus japonicus Gifu v1.2 Proteins.
MSGAMLFIKEDMEISDTQQEVLAGILNLCALVGSLVAGRTSDYIGRRYTIFLASVLFMLGAVLMGYGPNYTILMVGRCVG GLGVGFALMIAPVYSAEISSASSRGFLTSLPEFCIGIGILLGYISNYFLGKLTLKLGWRLMLGIAALPSLALSLGILTMP ESPRWLVMQGRLGSAKKVLLQVSNTTQEAELRFREIKVAAGFDENCNDEIVKQPQKSHLGEGVWKELLLRPTPPVRWMLI AAVGIHFFEHATGIEAVMLYSPRIFKKAGVTNKDKLLLATIGVGLTKITFLIIASFLLDKVGRRRLLQISTGGMVCALTL LGFSLTMVDHSNEKLLWALSLSILATYSYVAFFNIGLGPVTWVYSSEIFPLRLRAQGASIGVAVNRSMNATVSMSFISIY KAITIGGSFFMFAGISVLAWVFFYIFLPETKGVALEEIEMIFSKKPSGKNVAT
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Gene3D | 1 | 446 | 446 | 1.2E-117 | – | |
| ProSiteProfiles | 1 | 431 | 431 | 47.15 | ||
| Phobius | 1 | 19 | 19 | - | – | |
| PANTHER | 1 | 450 | 450 | 6.9E-213 | – | |
| PANTHER | 1 | 450 | 450 | 6.9E-213 | – | |
| CDD | 1 | 438 | 438 | 0.0 | – | |
| SUPERFAMILY | 2 | 439 | 438 | 2.22E-60 | ||
| TIGRFAM | 14 | 438 | 425 | 1.1E-95 | ||
| Pfam | 15 | 442 | 428 | 2.9E-103 | ||
| Phobius | 20 | 37 | 18 | - | – | |
| TMHMM | 21 | 38 | 18 | - | – | |
| ProSitePatterns | 37 | 54 | 18 | - | ||
| Phobius | 38 | 48 | 11 | - | – | |
| TMHMM | 48 | 70 | 23 | - | – | |
| Phobius | 49 | 66 | 18 | - | – | |
| Phobius | 67 | 71 | 5 | - | – | |
| Phobius | 72 | 94 | 23 | - | – | |
| PRINTS | 74 | 93 | 20 | 1.3E-16 | ||
| TMHMM | 75 | 97 | 23 | - | – | |
| ProSitePatterns | 79 | 104 | 26 | - | ||
| Phobius | 95 | 105 | 11 | - | – | |
| Phobius | 106 | 124 | 19 | - | – | |
| TMHMM | 107 | 129 | 23 | - | – | |
| Phobius | 125 | 135 | 11 | - | – | |
| TMHMM | 136 | 158 | 23 | - | – | |
| Phobius | 136 | 159 | 24 | - | – | |
| Phobius | 160 | 275 | 116 | - | – | |
| PRINTS | 249 | 259 | 11 | 1.3E-16 | ||
| Phobius | 276 | 297 | 22 | - | – | |
| TMHMM | 276 | 298 | 23 | - | – | |
| ProSitePatterns | 294 | 311 | 18 | - | ||
| Phobius | 298 | 308 | 11 | - | – | |
| TMHMM | 305 | 327 | 23 | - | – | |
| Phobius | 309 | 328 | 20 | - | – | |
| Phobius | 329 | 334 | 6 | - | – | |
| Phobius | 335 | 357 | 23 | - | – | |
| TMHMM | 342 | 364 | 23 | - | – | |
| PRINTS | 343 | 364 | 22 | 1.3E-16 | ||
| Phobius | 358 | 376 | 19 | - | – | |
| PRINTS | 366 | 378 | 13 | 1.3E-16 | ||
| Phobius | 377 | 397 | 21 | - | – | |
| Phobius | 398 | 408 | 11 | - | – | |
| TMHMM | 405 | 427 | 23 | - | – | |
| Phobius | 409 | 427 | 19 | - | – | |
| Phobius | 428 | 453 | 26 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Cellular component | Membrane | A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. | ||
| Cellular component | Integral component of membrane | The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. | ||
| Molecular function | Transmembrane transporter activity | Enables the transfer of a substance, usually a specific substance or a group of related substances, from one side of a membrane to the other. | ||
| Biological process | Transmembrane transport | The process in which a solute is transported across a lipid bilayer, from one side of a membrane to the other. |
Expression pattern of LotjaGi4g1v0115700.3, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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