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LotjaGi4g1v0124800.2

Overview

Field Value
Gene ID LotjaGi4g1v0124800
Transcript ID LotjaGi4g1v0124800.2
Related isoforms 1
Lotus japonicus genome version Gifu v1.2
Description GATA transcription factor; TAIR: AT5G66320.1 GATA transcription factor 5; Swiss-Prot: sp|Q9FH57|GATA5_ARATH GATA transcription factor 5; TrEMBL-Plants: tr|A0A061DFE1|A0A061DFE1_THECC GATA transcription factor 5, putative; Found in the gene: LotjaGi4g1v0124800
Working Lj name n.a.

Sequence information

Genomic sequence (LjG1.1_chr4:18161190..18162911) extracted from Lotus japonicus Gifu genome v1.2.

GTAAAAGAAAAAGGAACCGGCACATTTTATGAATAAGCCAAGGACGCTAACTTTCATCCCTCATTCAATGCTTTACCAAA CTCACCATCCTCTTCTCTTTCAATTTCATCCTTTCACTTCTTCCACACCCTCTCCTCACCTTTCAACTTCATCCTCATCA TCTTCTCCACCTTCACTTCCTCTATCTCCCTCCCCTCTCTCTCTCTCTCTCTCTCTCAGGTAACAGTCACAACCCACTCT GCATGTAAACTCTATTCTAAAACCATAAACTCAAACAAAAATTGAAAACAAATTCAGTTCTTCTTCTTCTTCTTAAAAGA AAAAGCAATTAATTGGTATTGTTTGTTTGTTCCATTTTAGGCTGAAACAGAAATGGAGTGTGTGGAAGCAGCGTTGAAGA GCAGTTTTAGGAAAGACACAGCCCTGAAACTCAGCTCCCAAACGTTCCTAGAAGAGTTGTCGGCGTTCAATGTTCAGAAT GTCGTCACCTCTTGTGACGACTTCGTTGTTGATGACCTCCTTGATTTTTCGCACGAAGAAGAGCTTTTTGAAGAAGAACC AGAACAACACCACCATGGCTCTGTTTCCGAGAAACAGAACGAAACCCAAGAAATTTGCAACCCTTCTTCGTTCAACGACC AGTTTCCCTCTTTACCCACCAGCGAACTCAGTGTTCCGGTAATCTCTTCTTCTTCTTCTTCTCTGCTTCTCTTTCATTTG AACTCAAAAGAAACAAGAAAAAACGGTTTTTAATGGTTGTGGAGTGTTGATTTTTAACGAAAGTTGCAATTTTACAGGAT GATGATGCTGCGAACTTGGAATGGTTGTCTCATTTTGTTGAGGAATCCTTCTCGGAACACACTGTTTCCTTGCCCACCGG AGTTTCAACGGAGAGCGGCGGAGAGAAAGAGGCTGAACCGGGAAGCCAGGTTCGACCCTGTTTCAGAACCCCGGTTCCGG CGAAGGCGAGAAGCAAGCGAACCAGGACCGGTGTACGGGTCTGGCCGGTCGTGTCGCCTTCTTTCCCGGAGTTATCTTCT TCAACCTCGAGCTCCACCACCACCACCACCACCGCAACACCATGTTCTCCGTCGCTCTCCTCACCCTCAAGCCCGGTGTT TGTTTGCCCTGCTGTGAGTTTTGAAAGAGGTTGGTTGCCGCCAGAGAAGAAGGCGAAGGTGAGGCCGGCCACGGAGGCGC TGCCGCCGCGGAGGTGCAGCCATTGCGGGGTTCAGAAGACCCCTCAGTGGCGAACCGGACCGCTCGGGGCAAAGACACTC TGCAACGCTTGTGGTGTCCGGTTCAAGTCGGGCCGGTTATTGCCCGAGTACAGACCGGCTTGCAGCCCTACTTTCTCGAG CCAATTGCACTCGAACCACCACCGAAAGGTGCTTGAGATGCGGCGGAAGAAGGAGGAGGTCATGGGTGAACCGGTGACCG GTTCAGGACTTCCTCCGGTTGACCCCGGTTTTTGATTTGATTACTGTTTAATTTCCCTTTTTTCTTTGTCAGTTAGGAAA AAAAGAGAGGCTAGTTTGAGAAAATTAAAGAATTAGACCCGGTTCAATGGGGCCCCAAGTCAGTGTACATATTCTCTTTT TCACCTTTGTTGGGTGAGGTAGGTGTTATTGTTAGAAGACTGTGATCATGTAACGGATTACTTGATTTGGAGGCTTTGAT ATTGAAATCCTTTTTATTTAAATTTCAAAAATTGTTTCTTTT
Download Genomic Sequence

CDS sequence (LotjaGi4g1v0124800.2) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGGAGTGTGTGGAAGCAGCGTTGAAGAGCAGTTTTAGGAAAGACACAGCCCTGAAACTCAGCTCCCAAACGTTCCTAGA AGAGTTGTCGGCGTTCAATGTTCAGAATGTCGTCACCTCTTGTGACGACTTCGTTGTTGATGACCTCCTTGATTTTTCGC ACGAAGAAGAGCTTTTTGAAGAAGAACCAGAACAACACCACCATGGCTCTGTTTCCGAGAAACAGAACGAAACCCAAGAA ATTTGCAACCCTTCTTCGTTCAACGACCAGTTTCCCTCTTTACCCACCAGCGAACTCAGTGTTCCGGATGATGATGCTGC GAACTTGGAATGGTTGTCTCATTTTGTTGAGGAATCCTTCTCGGAACACACTGTTTCCTTGCCCACCGGAGTTTCAACGG AGAGCGGCGGAGAGAAAGAGGCTGAACCGGGAAGCCAGGTTCGACCCTGTTTCAGAACCCCGGTTCCGGCGAAGGCGAGA AGCAAGCGAACCAGGACCGGTGTACGGGTCTGGCCGGTCGTGTCGCCTTCTTTCCCGGAGTTATCTTCTTCAACCTCGAG CTCCACCACCACCACCACCACCGCAACACCATGTTCTCCGTCGCTCTCCTCACCCTCAAGCCCGGTGTTTGTTTGCCCTG CTGTGAGTTTTGAAAGAGGTTGGTTGCCGCCAGAGAAGAAGGCGAAGGTGAGGCCGGCCACGGAGGCGCTGCCGCCGCGG AGGTGCAGCCATTGCGGGGTTCAGAAGACCCCTCAGTGGCGAACCGGACCGCTCGGGGCAAAGACACTCTGCAACGCTTG TGGTGTCCGGTTCAAGTCGGGCCGGTTATTGCCCGAGTACAGACCGGCTTGCAGCCCTACTTTCTCGAGCCAATTGCACT CGAACCACCACCGAAAGGTGCTTGAGATGCGGCGGAAGAAGGAGGAGGTCATGGGTGAACCGGTGACCGGTTCAGGACTT CCTCCGGTTGACCCCGGTTTTTGA
Download CDS Sequence

Protein sequence (LotjaGi4g1v0124800.2) extracted from Lotus japonicus Gifu v1.2 Proteins.

MECVEAALKSSFRKDTALKLSSQTFLEELSAFNVQNVVTSCDDFVVDDLLDFSHEEELFEEEPEQHHHGSVSEKQNETQE ICNPSSFNDQFPSLPTSELSVPDDDAANLEWLSHFVEESFSEHTVSLPTGVSTESGGEKEAEPGSQVRPCFRTPVPAKAR SKRTRTGVRVWPVVSPSFPELSSSTSSSTTTTTTATPCSPSLSSPSSPVFVCPAVSFERGWLPPEKKAKVRPATEALPPR RCSHCGVQKTPQWRTGPLGAKTLCNACGVRFKSGRLLPEYRPACSPTFSSQLHSNHHRKVLEMRRKKEEVMGEPVTGSGL PPVDPGF
Download Protein Sequence

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PANTHER
PTHR45658
1 319 319 9.2E-130 –
PANTHER
PTHR45658:SF16
1 319 319 9.2E-130 –
PIRSF
PIRSF016992
16 319 304 3.3E-84
IPR016679
MobiDBLite
mobidb-lite
58 102 45 - –
MobiDBLite
mobidb-lite
59 74 16 - –
MobiDBLite
mobidb-lite
75 97 23 - –
MobiDBLite
mobidb-lite
123 164 42 - –
MobiDBLite
mobidb-lite
177 200 24 - –
ProSiteProfiles
PS50114
236 272 37 11.556
IPR000679
SMART
SM00401
236 290 55 3.7E-16
IPR000679
SUPERFAMILY
SSF57716
238 298 61 5.23E-14 –
Gene3D
G3DSA:3.30.50.10
239 282 44 2.1E-12
IPR013088
CDD
cd00202
241 289 49 7.6366E-14
IPR000679
Pfam
PF00320
242 276 35 3.9E-16
IPR000679
ProSitePatterns
PS00344
242 267 26 -
IPR000679
MobiDBLite
mobidb-lite
307 327 21 - –

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0003677
Molecular function DNA binding Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid).
Subterm of
GO:0005634
Cellular component Nucleus A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent.
Subterm of
GO:0006355
Biological process Regulation of transcription, DNA-templated Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription.
Subterm of
Regulates
GO:0008270
Molecular function Zinc ion binding Interacting selectively and non-covalently with zinc (Zn) ions.
Subterm of
GO:0043565
Molecular function Sequence-specific DNA binding Interacting selectively and non-covalently with DNA of a specific nucleotide composition, e.g. GC-rich DNA binding, or with a specific sequence motif or type of DNA e.g. promotor binding or rDNA binding.
Subterm of
GO:0045893
Biological process Positive regulation of transcription, DNA-templated Any process that activates or increases the frequency, rate or extent of cellular DNA-templated transcription.
Subterm of
Positively regulates

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Expression data

Expression pattern

Expression pattern of LotjaGi4g1v0124800.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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