Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message
| Field | Value |
|---|---|
| Gene ID | LotjaGi4g1v0128600 |
| Transcript ID | LotjaGi4g1v0128600.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Cold shock protein, putative; TAIR: AT4G36020.1 cold shock domain protein 1; Swiss-Prot: sp|O65639|CSP1_ARATH Cold shock protein 1; TrEMBL-Plants: tr|A0A0S3R460|A0A0S3R460_PHAAN Uncharacterized protein; Found in the gene: LotjaGi4g1v0128600 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:18738796..18740568) extracted from Lotus japonicus Gifu genome v1.2.
GTTGATGTGAATATCTAGAATGAATCAATCAGTATAAATAGAGAGAGAAGCCCTAGGGGTTATTTGCTCTTGTTCTTGGT GTTCTGTTTTCTTGGCGATTCGTTCCGCCACTTGTGACGGTGTCTAGGGTTTCCGAATCGCAATCCAATGGCGGAAGAGA GATTCAGCGGCGTCGTTCAGTGGTTCAACAATGTCAAGGGTTTCGGCTTCATCAAGCCCGATGACGGCGGAGAAGATCTC TTCGTCCACCAATCCTCCATCAGATCCGACGGCTACCGAACCCTCCTCGAAGGCGATCTCGTCGAGTTCTCCATCGCCAC CGGCGACAACGACAAGACCAAAGCCGTCGATGTCACCGGCCCCAACGGCGCCGCTCTCCAGCCCACTCGCAAGGATTCCG CCCCGCGCGGATTCGGCGGATGGAGGGGCGGCGAGAGGCGTAACGGTGGAGGAGGCGGCGGCGGCGGTGGTGGTTGCTAC AACTGTGGCGACACTGGGCATCTGGCTAGGGATTGCCACCGGAGCAATAACAACGGTGGAGGCGGAGGCGGCGCTGCGTG CTACAACTGCGGTGATGCTGGCCATCTGGCTAGGGATTGCAACCGGAGCAACAACAACTCCGGCGGAGGCGGCGCTGGAT GCTACAACTGTGGCGACACTGGGCATCTGGCCAGGGACTGCAACCGGAGCAACAACAGCGGCGGAGGTGGAGGCGGAGGC GGCGCGTGTTACACTTGCGGTGGGTTTGGGCATCTGGCTAGGGACTGCATGCGCGGAGGCAATGGTGGCGGCGGTGGTCC AGGAAGCGCGTCTTGCTTCAGATGCGGTGGGATCGGGCACATGGCGAGGGACTGCGCAACCGCGAAGGGTCCGAGCAGCG GTGGAGTCGGCGGCGGAGGTTGCTTTCGATGCGGGGAGGTTGGTCACTTGGCTAGGGATTGTGATGGTGGCGTTGCTGTC AGTGGTGGTGGTGGGAATGCTGGGAGAAACACATGCTTCAATTGTGGGAAGCCTGGGCATTTTGCTAGGGAATGCATTGA AGCCTCTGGGTGAAAGTGCAGTGAAGATTTGAAGAGGGAGGTTGCTTTTTGCTGAGGATAAGAGGTGGAATAGTACATAG CATATTATCTCTTTTTTGGCACCTTTTAACAGTTAGCTTATTAGTCTCTCTTATTATTATTATTATTCTGATATTTTGGG AAGTTTATACATGAGATGTTATGGCAATTGCTGTGGTTTTGGTTTGACCCTGTTACTGGTTTACATGATGCCTTTTGTGG TTTTCGTTATAGTTGTTACTTGACTGTTAGACCTTGCTTCCGATTATTACTCTCTTGGTCAGTTGAAATTTTAGATCCTG AAGTTGAATGTGTTGATTGATTAGACTGAAGTTTGTTTCAATTTGGATGGTAGGCGAGTTAAAATCATAATGCCAATCTT ATGCCTTTCCAAAGATGCTAATCTAAATCCAATTATAGATATTGTAGCAGTAATTCACTAATTCTCATTGGGTCTGGACT TCATGGTTGATTCTTTGTAACATTAATTTGGATTGAGGCTTGCAATAATGGGTACTAAGATTGACTCATGTGTATTTTTT CCTCTTGAAAACATGAATGTCACATTGTTATTTTCCGATCTATCTTGACCTTTTAAGTATATTGATTTTCCATCCTGTGT CGCCTTTGCAACTCTTCCTTAGAGTCTTGGACATACTTCCCCTGAAACTATGTCAAACTTTTTATTGGCTTCTTTCATAA TTTTATTCCCAGG
CDS sequence (LotjaGi4g1v0128600.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCGGAAGAGAGATTCAGCGGCGTCGTTCAGTGGTTCAACAATGTCAAGGGTTTCGGCTTCATCAAGCCCGATGACGG CGGAGAAGATCTCTTCGTCCACCAATCCTCCATCAGATCCGACGGCTACCGAACCCTCCTCGAAGGCGATCTCGTCGAGT TCTCCATCGCCACCGGCGACAACGACAAGACCAAAGCCGTCGATGTCACCGGCCCCAACGGCGCCGCTCTCCAGCCCACT CGCAAGGATTCCGCCCCGCGCGGATTCGGCGGATGGAGGGGCGGCGAGAGGCGTAACGGTGGAGGAGGCGGCGGCGGCGG TGGTGGTTGCTACAACTGTGGCGACACTGGGCATCTGGCTAGGGATTGCCACCGGAGCAATAACAACGGTGGAGGCGGAG GCGGCGCTGCGTGCTACAACTGCGGTGATGCTGGCCATCTGGCTAGGGATTGCAACCGGAGCAACAACAACTCCGGCGGA GGCGGCGCTGGATGCTACAACTGTGGCGACACTGGGCATCTGGCCAGGGACTGCAACCGGAGCAACAACAGCGGCGGAGG TGGAGGCGGAGGCGGCGCGTGTTACACTTGCGGTGGGTTTGGGCATCTGGCTAGGGACTGCATGCGCGGAGGCAATGGTG GCGGCGGTGGTCCAGGAAGCGCGTCTTGCTTCAGATGCGGTGGGATCGGGCACATGGCGAGGGACTGCGCAACCGCGAAG GGTCCGAGCAGCGGTGGAGTCGGCGGCGGAGGTTGCTTTCGATGCGGGGAGGTTGGTCACTTGGCTAGGGATTGTGATGG TGGCGTTGCTGTCAGTGGTGGTGGTGGGAATGCTGGGAGAAACACATGCTTCAATTGTGGGAAGCCTGGGCATTTTGCTA GGGAATGCATTGAAGCCTCTGGGTGA
Protein sequence (LotjaGi4g1v0128600.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MAEERFSGVVQWFNNVKGFGFIKPDDGGEDLFVHQSSIRSDGYRTLLEGDLVEFSIATGDNDKTKAVDVTGPNGAALQPT RKDSAPRGFGGWRGGERRNGGGGGGGGGGCYNCGDTGHLARDCHRSNNNGGGGGGAACYNCGDAGHLARDCNRSNNNSGG GGAGCYNCGDTGHLARDCNRSNNSGGGGGGGGACYTCGGFGHLARDCMRGGNGGGGGPGSASCFRCGGIGHMARDCATAK GPSSGGVGGGGCFRCGEVGHLARDCDGGVAVSGGGGNAGRNTCFNCGKPGHFARECIEASG
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Gene3D | 1 | 83 | 83 | 3.9E-27 | – | |
| PANTHER | 3 | 178 | 176 | 4.0E-87 | – | |
| PANTHER | 3 | 178 | 176 | 4.0E-87 | – | |
| SUPERFAMILY | 4 | 73 | 70 | 1.05E-20 | ||
| ProSiteProfiles | 5 | 71 | 67 | 31.909 | – | |
| Pfam | 7 | 71 | 65 | 1.6E-23 | ||
| SMART | 7 | 72 | 66 | 1.2E-23 | ||
| CDD | 8 | 71 | 64 | 1.73084E-26 | ||
| PRINTS | 8 | 23 | 16 | 1.3E-11 | ||
| ProSitePatterns | 19 | 38 | 20 | - | ||
| PRINTS | 29 | 38 | 10 | 1.3E-11 | ||
| PRINTS | 44 | 62 | 19 | 1.3E-11 | ||
| MobiDBLite | 65 | 100 | 36 | - | – | |
| SUPERFAMILY | 93 | 125 | 33 | 5.93E-5 | ||
| Gene3D | 104 | 162 | 59 | 3.7E-14 | – | |
| Pfam | 109 | 123 | 15 | 5.1E-6 | ||
| SMART | 109 | 125 | 17 | 4.5E-4 | ||
| ProSiteProfiles | 110 | 123 | 14 | 11.004 | ||
| SUPERFAMILY | 127 | 181 | 55 | 1.35E-11 | ||
| SMART | 137 | 153 | 17 | 6.4E-4 | ||
| Pfam | 137 | 151 | 15 | 1.6E-6 | ||
| ProSiteProfiles | 138 | 151 | 14 | 10.971 | ||
| Gene3D | 163 | 186 | 24 | 2.3E-6 | – | |
| SMART | 164 | 180 | 17 | 2.8E-4 | ||
| Pfam | 164 | 178 | 15 | 8.4E-7 | ||
| ProSiteProfiles | 165 | 178 | 14 | 11.004 | ||
| PANTHER | 184 | 239 | 56 | 4.0E-87 | – | |
| PANTHER | 184 | 239 | 56 | 4.0E-87 | – | |
| SUPERFAMILY | 185 | 239 | 55 | 1.26E-9 | ||
| Gene3D | 187 | 248 | 62 | 1.1E-14 | – | |
| SMART | 193 | 209 | 17 | 8.2E-4 | ||
| Pfam | 193 | 208 | 16 | 6.4E-6 | ||
| ProSiteProfiles | 194 | 207 | 14 | 10.147 | ||
| SMART | 222 | 238 | 17 | 2.7E-4 | ||
| ProSiteProfiles | 223 | 236 | 14 | 10.361 | ||
| Pfam | 223 | 237 | 15 | 3.1E-6 | ||
| SUPERFAMILY | 241 | 266 | 26 | 2.89E-6 | ||
| PANTHER | 244 | 298 | 55 | 4.0E-87 | – | |
| PANTHER | 244 | 298 | 55 | 4.0E-87 | – | |
| Gene3D | 249 | 269 | 21 | 1.5E-5 | – | |
| SMART | 251 | 267 | 17 | 1.5E-4 | ||
| Pfam | 251 | 266 | 16 | 1.0E-6 | ||
| ProSiteProfiles | 252 | 265 | 14 | 10.79 | ||
| SUPERFAMILY | 273 | 297 | 25 | 2.51E-7 | ||
| Gene3D | 274 | 301 | 28 | 2.5E-7 | – | |
| Pfam | 281 | 296 | 16 | 2.2E-7 | ||
| SMART | 282 | 298 | 17 | 1.3E-5 | ||
| ProSiteProfiles | 283 | 296 | 14 | 11.021 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Nucleic acid binding | Interacting selectively and non-covalently with any nucleic acid. | ||
| Molecular function | Zinc ion binding | Interacting selectively and non-covalently with zinc (Zn) ions. |
Expression pattern of LotjaGi4g1v0128600.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
Loading expression data from ljgea-geneid. Please wait…