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| Field | Value |
|---|---|
| Gene ID | LotjaGi4g1v0132200 |
| Transcript ID | LotjaGi4g1v0132200.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Eukaryotic aspartyl protease family protein; TAIR: AT2G17760.1 Eukaryotic aspartyl protease family protein; Swiss-Prot: sp|Q8VYV9|APF1_ARATH Aspartyl protease family protein 1; TrEMBL-Plants: tr|G7LB59|G7LB59_MEDTR Eukaryotic aspartyl protease family protein; Found in the gene: LotjaGi4g1v0132200 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:19332349..19338744) extracted from Lotus japonicus Gifu genome v1.2.
GACAAATTCTAACTTCTTACGTGAAATCACCTTTACATTTGAGCCAACGTCAAACCAAATATACACTCAGTTAGACGGAG TTAATTAACCGTGCAACACAGAACTTTATTTGGTCCTCTTCCACTTTTGATCGGGGATGACCCTTGGTTAATTGGGATAA TGTGAAGAAGGATAAGAAAGAAGGTGTGTTTGGCGTGAGAGATATTGTTGCAGCGAATAAAACGATTCTTGGAAAGTCAG TTTGATCTCTCCTTTACCAACCGGATAAGCTGTGGGTGCAAGTAGTGTCGCATAAATATCTGAAGCAAAACAACATTCTG CTTTTTGGAAGGGGTTGTTGAAAGCAAGGGACCAGTTACGGGAAGGGTTTTCTTACAAGCTCGGCAATGGCGAAACGTCT TTTTCGTTCACAGATAGGTATGGGCAAGGAGCTTTGGGTAGAATCGTGTCTGCGGTGCATATTTCAGATTCATCTTATCA GTTGAAGCATTTAATCAAGGAAGGAGGTTGGGATTGTACTGCTCTGTACACGACAGTTCCTCCCCTTTTTCACAAAATTC TGCGAACCATTGAACTTGTGTTGGATTCCCGTTTGCAGGACGTATGGGTTTGGCAGTCGTGTGCGACGGGTGCTTACACA GCGTCTTCAGGTTATAAATGGCTGCACAAGCCAGCTCATGGACCACAGTTGGTGAGTGATTAGGACCTGTTTTGGAAGCT GCGAGTTCCGAAGAAAATTAAAGTATTTATCTGGCTTTTGCTTCAAGATGCTACTCAGGTTAATGCACATCGCTATCGGT GTCACCTTGCACTTTCTCCTGGCTGTATGCGATGCTCTCATGCTATGGAGGATAGTCTCCATGCTCTCATAGATTCCCCC ATGCTCGTGAGGTCTGGTCGCGGTTTGGTGCACAGTAGTGGCCAGGCTTCTTCTCTTTGACGATCCAGCTTTGGGTTTAG ACTCAACTTCGAGGGGAGCGCTGTGCCTTGTTCCTTGCGGTGATTTGGAGGCAGTGGTTATGGCGGAACGAGATGGTGAT GGGCAAGAAGGGCTGGACAGTTGCGTTTGTTTGTGAGGCGATCCGGCGAGATATGGACGAGCATGAGAGGTGGCTTGGCG GTGGGGTTTCGCATGACCAAGTTCGTTCATGGAGCACCTAAGATCCTCCTCCAATTGGCTACATCTCTCTCATGGTGGAT GAAGCTTACAACCCATCTTCCAACCGTATGCGCATGGGGGGTCTTGCTCGTGACTCTACAAGGACTTGGTTGGGAGGCTT TTATGTTGGAGCAGCTGGTGGAGATCCATTACTTGCGGAGATGCAGGCTTTGGCAATGGTATTGAGGTTCCTTTAGTGCA CGAATTGGCAGAAAATTATTTGTGGAACGGATTTCCTGGAGCTGGTTCAGGCGATTGGTAAACGTCGAGTTGATTTTCAC CCGTATGGTAGTGCTTTAATGGACATCCAACTTCTACTAGCAAGGAATTGAGAAGTCAAAATTGGTCATGTTCCTAGAGA GGGAAATGCTCTAGCGAACGGTCTTGCAGACATTGGTAGAAGGCTTCAATATGCTCTTGTTGATTTAGTTTCTCCTACCA CTTCTTCGGAAGAATAAGGATTTAGTAGCATTGTAGTTGTGGTTAATTTTCCTATTTACAAAAGTAAAAGATTTATTGAG TCCCGAGACCCACATTTATACGTGTTGAATCTTCCCCAATTCCTACTTGAGCAAATAGATGTAGGTAGAGCCAATTGAAC TCTAGGACAGCCCATCATCACTAGAATCCTCGATCACCAAACACTATCATCAAAACTTTTTTCCCCTCTCTCTACACTAC ACATGTCCCTAAACTTTTCTATCTCAACCCAAAAACTCTTGTATCCTACTACTTTTTCTTTTCTCTCTATTTTTTGTCTG TCTTGTCGACGCTCCACATTTTCTACCAAACAGCAAAGTTGACCACAACTTTCCGGGAAAACTCACCTGCATATTTTCTC GCCGGGAAAAAACTCTCCCACCTACCCAACAAGCTCTCTTCAGCTGATCAGCTCATGGCTTTGCCACAACTGGTGTTGTT GGGGTTGGTGGTGGTGAGTTTAGCTTCACAGTGCTGTCACGGTTCCGGCCAATTCGGATTCGACATCCACCACAGATTCT CGGATCCGGTCAAGGGCATTCTGGGTATCGACGAGTTACGGTTACCCCACAAGGGAACTCCTCAGTACTATGCTGCTTTG GTCCACAGAGATCGTGTCTTTCGTGGCCGTCGACTCGCCGGCGATCAGCACGCACCTCTCACTTTCGCCGCCGGCAATGA CACTCATCAGATTGCTGCTTTTGGATAGTATGATAATTCTTCATACACTTGTCAAATTTTCATTATTTATTTGATTTATC TTATTACTATTTTTAAATAACCCAAAAATAAAAATTCTGGGTCCAAGTTTTTATCTGAATTTTGTGTCAATTTCTTAATA TAGAGGTATATACTGTGTTTGTCAGTTGATGTGATCCATTGGAAACCATATTAAGATGGAAAATTCAGAGAAATTGGCAT TAATTATATTCTAATCTGTTGCCAAAGTGTTTTAGTTTGTTGAAGAAATTTGGACTTAGTTATATAAGAAATTATGGATA TTTTTCCTCACCTTCTCTTTGTTGTCCCCCATCTACTTTAATGATAGAAGAAGTTTAATGATGGGTTTTTTGTGCAGGAC TTTCCTAATAGAGTAATGCTATATTGTCACACTATATGCTATATGCTATTCTGTTGCCAAATATGCTATGCTTTTTTTTT TTACACTTCGAAGATATGAAATGAACTAACTTTTCATTTAATATTTTTTTCTATTTAGTATGTAGGGGGATTTATTAATC AAACCTTTCTAATCTGGTTTTTGATTGAACTCAATGGCGTAGTGTGGTTCATATATAGCCGACCTCACTCAGTGGGATAA GGTTTTGTTGTTGTTAAGTATGTAGGAGGATTTATAGTTACTCTTCCTATTATGATGTGTATGATAGTAATAATTCGTCC TCATTATCTGGATTTCAGTTTGCATTTTGCCAATGTTTCGGTTGGGACACCACCTTTATGGTTTGTGGTGGCATTGGATA CTGGGAGTGACTTGTTCTGGTTACCTTGTAATTGTACCAGTTGCGTGCGCGGGTTAAAGAGAGAAAGTGGAAGTGTATGT ATGCACTATCTCTTTGCTGGTTAAGATTCTTTATTGTATTGTGTTACTATGCTTCCTTGGTAATATTGAAGAATGAAGAC CTTACATGAAACTCAGTTAAATTGATACACTTTTCTGTGGCAGGTAATTAATCTTAATATCTATGAGCTTGAGAAGTCAT CCACAATGAAAAGTGTTTCGTGCAGTAGCAGCTTATGTAAACAAACAAAATGCCCTTCATCTGGTAGCCATTGTCGATAT CAAGTTGACTATCTCTCTAATGATACTTCATCTTCTGGGTTCATGGTAGAAGACGTGCTGCACTTGATAACAGATAATGG TCAAACAAAAGATACTGAAACACGAATTAGTATTGGGTAAAATTCTTAACATATTACTGAGAAATTTTATTGGCTGAATA TATATTTGAAGCTTTGTCAAAAACACACGACTCTGCTAATCTGCTTCTTAGTAGGTTAGACTATGCAATGGTATGCAGCT AGCTAGTAATGTTCATGAAACCTATGGCAGGTTCATGAGCTGGAAGTTTCATAGTTTCCATTAATACTTAAAACAATATT CCAATACCAATGCTTCTGTTTAATTCTTTTTTCTTTGAAATTGAAACTGCTTTGTATAATCAACCTTTTTGCTTTGTTAT TTCTCAAATTAACAACATTTAAGTTGGTTCTTCTTAACATCAATTTATGGTATTTGCCACCCAATTTGTTGCAGTTGTGG TCAAGTTCAGACTGGTGTGTTTCTAGAGGGGGCCGCTCCAAATGGTCTATTTGGACTTGGTATGGATAATGTATCTGTTC CTAGCATCCTAGCCCAAAAGGGGCTTATTTCAAATTCTTTTTCAATGTGTTTTGGATCTGATGGTTCTGGAAGAATCACA TTTGGGGATACTGGCAGCTTGGACCAAGGAAAAACACCATTCAACCTAAGGGCATTGCAGTAAGTGAATATTATCTTTCT TTCCTCTTGTAACAAGAAGTTGCGACTTCCTTGCACTAAGGGTGCAGTATGTTTTTGTTTAATAAAAATGGTCAATATTT GATTTTGGTCCATGATTTTAAAACTCCACGTTTTGGTCCCTCGTTTCTTGGAAGTCTCGTTTTGGTTCTCTATCGTCAAC ACATTTTGTAATAAATGAGAAATACATGGGCTATTTTGAAAATATACCAATTATAGGGAGTGTATGAAGGAAAGTCTTCA AAAGAGTGTGTAACTAGCATCCTCAGCACTAAAACTATAATGAACAAATTTGATATCACAAATGTTGTTTAGTAATGATT ATCCTTTTCTTGTATTGTTTGGTTTACCATTTTGTTAAGGCCGAGGCCTAAAATGAGGCTATTTCAGAATTAGAACCAAA ATGGGCCGTTTTAAAATAAGTTACCAAAAGTATCGTGTACCCTAAAAAAATATGGTGCTATGTTTACTAATGCGTATTTT GTCCTGGATACTTCTTGCCAGTCCGACATATAACATCACCATTACCCAAATTAAAGTGGGACGAAATGTTGCTGATCTTG AGTTTCATGCAATTTTTGACTCTGGGACCTCATTCACATACTTAAATGACCCAGCTTATACACTTATTGCGGATAAGGTA AGCAATCTATGTCATAGTTTTTTAAAATGGGATCACGAGTTTTCATGTCACACCAGTTGTAAAAAATTTCTGTTTTGTTT GCAGTTCAACTCTCTAATCAAAGCAGATCGGCCTTCATCTCAATCAACTGATTCTGATCTCCCCTTCGAGCACTGTTATG CCGTCAGGTAATAATGGCTTGAGAGAAACCACCAATTTATTTTTTCCTTTAACAAAATTCAGTACTGATTTCCACCTTAC ATGCAGTCCAGATCAGACAATTGAACTTCCCTATTTGAATCTAACGATGAAAGGTGGAGATGATTATTATGTCACGAATC CATTAATACCAGTTTTTAGTGAGGTGAGAGCATAATGTCAAACTTCTGGTTTTATGATATCTAATGATTCTCAACCTTAT TAATTTCAAATTACTTTTGTGATTTCCAGGTTGAAGGAAATCTCCTTTGTTTGGGTATCCAGAAAAGTGACAACGTGAAT ATCATTGGACGTGAGTATTTACAGAAGAACCTTGATTGATAAGATCATAAAGTTTTGAATTCAGAGTGCATGTTAGAAAA ACATTGCAGAATCGTGTAGTGGGCTAAACTCGTGTATTCTGAATGCTACAAATAACTGTTTTTGGCCTCTCATATGCCAT GAGTTTCCCTATAGCTAAACCAAACATGCACATAATTGTCAACTATGATGTCCTTTTGAAAACTATTTTGTCAATCCACG CCTTCTATAGCGTATTTGGAAATCCTCCTATAATAGATTCTAAAACCAAAATCAAATCTGAAGAAAAGCTTATGTGAGTA GCTTCTGGAGGCCATAATTGATTATGAGGAAAGAGAAATTGATCCAAATATGTTATTATTAGCGTAACAGCTGCCAAGTA ACAGTACATGCTAGTTGTGCTTGTCTATAATTTTAATAAATCATACATTGAGTTATGACTAGAGAATGTATGACTTCAAT CAAGTTATTATTACTAAGCATTGACATTATGTTTATCTTGATGCAGAAAACTTCATGACCGGTTACCGTTTAGTCTTTGA TCGCGAAAACATGATTCTTGGTTGGAAGGAATCGAATTGTGAGTACATTTCCCCTCAGCATTAGAACTTGTCACAATTTA TTTCTCTTTAATTTATTTCTCTTTTCCATTGATTGTTATTAAACAATGAGATATGCATGTTCTTAGGTTCTGAGGAAGTA CTCTCCAACACATTACCTTTTAACCCATCTCACTCTCCTGCTATTTCCCCTGCTGTTGCTGTGAACCCCGTGGCTACATC AAACCCATCAAGTAATCCTGGGAGGCTTTCGCCAAATCACTCGTTTAGGATGAAACCTACTTTTGCATTTATGATGGTCC TTTTACCTCTTTTAGCCATTCTTTGAGCATTCCTTTGTCCATTCCATCATATATTATTCAATTTTATAGGATTTGTAATT TTAGCATACGAGAAGCATTGCTGCTTCCTTTTTTTCTTTTAGTTTTAATAGCATTGATTTGATCATGGGCTTGTATATAA TGTACCTACCATATAGTAAACTAAAGAAATTTCTGTTACATTATATGTTATATAGCAATTGGCTGGCATCACTTAA
CDS sequence (LotjaGi4g1v0132200.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCTTTGCCACAACTGGTGTTGTTGGGGTTGGTGGTGGTGAGTTTAGCTTCACAGTGCTGTCACGGTTCCGGCCAATT CGGATTCGACATCCACCACAGATTCTCGGATCCGGTCAAGGGCATTCTGGGTATCGACGAGTTACGGTTACCCCACAAGG GAACTCCTCAGTACTATGCTGCTTTGGTCCACAGAGATCGTGTCTTTCGTGGCCGTCGACTCGCCGGCGATCAGCACGCA CCTCTCACTTTCGCCGCCGGCAATGACACTCATCAGATTGCTGCTTTTGGATATTTGCATTTTGCCAATGTTTCGGTTGG GACACCACCTTTATGGTTTGTGGTGGCATTGGATACTGGGAGTGACTTGTTCTGGTTACCTTGTAATTGTACCAGTTGCG TGCGCGGGTTAAAGAGAGAAAGTGGAAGTGTAATTAATCTTAATATCTATGAGCTTGAGAAGTCATCCACAATGAAAAGT GTTTCGTGCAGTAGCAGCTTATGTAAACAAACAAAATGCCCTTCATCTGGTAGCCATTGTCGATATCAAGTTGACTATCT CTCTAATGATACTTCATCTTCTGGGTTCATGGTAGAAGACGTGCTGCACTTGATAACAGATAATGGTCAAACAAAAGATA CTGAAACACGAATTAGTATTGGTTGTGGTCAAGTTCAGACTGGTGTGTTTCTAGAGGGGGCCGCTCCAAATGGTCTATTT GGACTTGGTATGGATAATGTATCTGTTCCTAGCATCCTAGCCCAAAAGGGGCTTATTTCAAATTCTTTTTCAATGTGTTT TGGATCTGATGGTTCTGGAAGAATCACATTTGGGGATACTGGCAGCTTGGACCAAGGAAAAACACCATTCAACCTAAGGG CATTGCATCCGACATATAACATCACCATTACCCAAATTAAAGTGGGACGAAATGTTGCTGATCTTGAGTTTCATGCAATT TTTGACTCTGGGACCTCATTCACATACTTAAATGACCCAGCTTATACACTTATTGCGGATAAGTTCAACTCTCTAATCAA AGCAGATCGGCCTTCATCTCAATCAACTGATTCTGATCTCCCCTTCGAGCACTGTTATGCCGTCAGTCCAGATCAGACAA TTGAACTTCCCTATTTGAATCTAACGATGAAAGGTGGAGATGATTATTATGTCACGAATCCATTAATACCAGTTTTTAGT GAGGTTGAAGGAAATCTCCTTTGTTTGGGTATCCAGAAAAGTGACAACGTGAATATCATTGGACAAAACTTCATGACCGG TTACCGTTTAGTCTTTGATCGCGAAAACATGATTCTTGGTTGGAAGGAATCGAATTGTTCTGAGGAAGTACTCTCCAACA CATTACCTTTTAACCCATCTCACTCTCCTGCTATTTCCCCTGCTGTTGCTGTGAACCCCGTGGCTACATCAAACCCATCA AGTAATCCTGGGAGGCTTTCGCCAAATCACTCGTTTAGGATGAAACCTACTTTTGCATTTATGATGGTCCTTTTACCTCT TTTAGCCATTCTTTGA
Protein sequence (LotjaGi4g1v0132200.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MALPQLVLLGLVVVSLASQCCHGSGQFGFDIHHRFSDPVKGILGIDELRLPHKGTPQYYAALVHRDRVFRGRRLAGDQHA PLTFAAGNDTHQIAAFGYLHFANVSVGTPPLWFVVALDTGSDLFWLPCNCTSCVRGLKRESGSVINLNIYELEKSSTMKS VSCSSSLCKQTKCPSSGSHCRYQVDYLSNDTSSSGFMVEDVLHLITDNGQTKDTETRISIGCGQVQTGVFLEGAAPNGLF GLGMDNVSVPSILAQKGLISNSFSMCFGSDGSGRITFGDTGSLDQGKTPFNLRALHPTYNITITQIKVGRNVADLEFHAI FDSGTSFTYLNDPAYTLIADKFNSLIKADRPSSQSTDSDLPFEHCYAVSPDQTIELPYLNLTMKGGDDYYVTNPLIPVFS EVEGNLLCLGIQKSDNVNIIGQNFMTGYRLVFDRENMILGWKESNCSEEVLSNTLPFNPSHSPAISPAVAVNPVATSNPS SNPGRLSPNHSFRMKPTFAFMMVLLPLLAIL
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 23 | 23 | - | – | |
| Phobius | 1 | 5 | 5 | - | – | |
| SignalP_EUK | 1 | 17 | 17 | - | – | |
| Phobius | 6 | 17 | 12 | - | – | |
| PANTHER | 7 | 468 | 462 | 7.3E-159 | – | |
| PANTHER | 7 | 468 | 462 | 7.3E-159 | ||
| Phobius | 18 | 23 | 6 | - | – | |
| Phobius | 24 | 491 | 468 | - | – | |
| Gene3D | 84 | 279 | 196 | 3.4E-42 | ||
| SUPERFAMILY | 94 | 447 | 354 | 1.07E-82 | ||
| ProSiteProfiles | 100 | 442 | 343 | 38.858 | ||
| Pfam | 101 | 279 | 179 | 1.7E-36 | ||
| PRINTS | 106 | 126 | 21 | 1.8E-8 | ||
| ProSitePatterns | 115 | 126 | 12 | - | ||
| Gene3D | 282 | 451 | 170 | 3.5E-33 | ||
| Pfam | 299 | 442 | 144 | 3.3E-16 | ||
| PRINTS | 319 | 330 | 12 | 1.8E-8 | ||
| ProSitePatterns | 319 | 330 | 12 | - | ||
| PRINTS | 418 | 433 | 16 | 1.8E-8 | ||
| Phobius | 492 | 510 | 19 | - | – | |
| Phobius | 511 | 511 | 1 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Aspartic-type endopeptidase activity | Catalysis of the hydrolysis of internal, alpha-peptide bonds in a polypeptide chain by a mechanism in which a water molecule bound by the side chains of aspartic residues at the active center acts as a nucleophile. | ||
| Biological process | Proteolysis | The hydrolysis of proteins into smaller polypeptides and/or amino acids by cleavage of their peptide bonds. |
Expression pattern of LotjaGi4g1v0132200.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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