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| Field | Value |
|---|---|
| Gene ID | LotjaGi4g1v0134300 |
| Transcript ID | LotjaGi4g1v0134300.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Regulator of Vps4 activity in the MVB pathway protein; TAIR: AT4G35730.1 Regulator of Vps4 activity in the MVB pathway protein; Swiss-Prot: sp|Q54I39|IST1L_DICDI IST1-like protein; TrEMBL-Plants: tr|A0A0B2RT62|A0A0B2RT62_GLYSO IST1-like protein; Found in the gene: LotjaGi4g1v0134300 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:19572346..19576637) extracted from Lotus japonicus Gifu genome v1.2.
AAAAAAATAAATAAAGTATGTATGTATGTATCATTACTATTACTAGTGCACCTCTTTGCATAGGATTCCAATCGAACACA AATCGAAGCTTCATTCATAACGTGTTCCTACCTCTAACGGCTACATTTTCCCACGCAGTAATGGGCCCACCACTCTACTA AAAACGACACTTTTCAACCTTTATACAGTATATTTTTCTTTCCTTTTCAGCAGACCGTTACACTTCCTCCCTCAAAGCAC CACCATTCCTCCTTCACTCTCTCTCTCTCCGCCGCACCACACCGCCATGACGGTCGCCAGCGCAGCCGCATCACGCACCA AGAGGCTCGTCAAGCTCACCCTCGCCCTCCTCAGCCTCGGCTTCAACTCCTCCAAATGGTAACCAACACCTTCCTCCTTC CTTCTTCCCCCTTCTCGTTCTTGAAACACGAAAATGAAGGTTTATTTTTGTCGTTTTGCAGCAAAACGGCGGCGAAGATG GCGGTGGCGAGGATCAAGCTGCTCAGGAACAAGAGGGAGGTGGTCGTCAGGCAAATGAGGCGTGACATTGCTCTCCTTCT CCAATCAGGTCAAGATGCCACTGCACGTATCAGGGTAATTTGTCCCCTCGCTAAACCCTAACCCAATCCAACGCTCTCTT TCTTGTATTTTTTCCCTTTGAAGTATAAACTGAAACTTTTCAATTTAGAATCCCCAGTTATGGTATCTTCGAATTTCTAT ATATATATGCTAATTAGAGCCTGTTTGGATATGCACCAAAAAGCATTTATTGGAGCTTCTCTACTATAGAAAAAAGTACA ACATAAGCTCCAATATGTGCTCTTGATCCGCATCCAAACGAGGTCTTAGTCCACGAAGGATCTGAGTTTTTGATAAAACT TTAGGGACTGTTCTACTTACTAGGATAGTTGCTCATTGGATGAGGAATCAAAAATAAAAAGTTAGACATGTTCAGCAGAG TATGAAATGAAACACTCCTCACCTATCCAAAAATAGTAGATGATTGTAGTGGGAGTAGAATATGAATGTACTTTATAACT GCGAATCACTACTTAGTTACTTATTATCCGAGAGTTCATACTATACTTGTCCGTGGGGAGGAGGATTCAGATATGTGTGG CCTAGAATTAGTCATAATAATTTGTGATAAGATATTATGATGTCATTTGATCTGCATAATTGACATTATTGAATGGAAGC TGAGATCATTAATTTGGAAGAACTATTGCATGTACAATAGATCTACCATGTGTCTGACCCTTCTTTGGATACTGAGCTTT ATAGCACCAGTTTTCCCTTTTTGTTGGATGCCCTTCAAAATGGCTGTGCTGTTTGTCCTTCTTTATCTTGCCTACATAGA AATGCACTAGATGGTTGTGTTAATTGTACAGAACAGACATAAACGTTCTTCATAGATTGTTATATTTTAAAGAGAAAATG TTCCTTGATTGGAAATTGGGGAGTTAGCCTTTGCCATTTCGTAGAAAAATAGCTTTGGTTCTGTATCTCTGTGCTTACTT GGTTAGTTGTGGGTATTGCTGGTTGTTGCTTAAATCTCATTCCGTGACAAAATGGAGATATTCATATAAGAAACCTAACT ATAGTTCATGGGAATAAAAGTGATAAGGAAGGGTAATTTATGTAATTCCAAATCACTTTCCTAGAGTTCAGGCAAAGAGA ACATCATGTGCTGCTCTTTTGGATATTAGTTATGGAGCCCGTTTGGATACAGATTACAGACTTATTGGAGCTTGTCTGCT AGAAAAAAGAACTGTATACGTTCCAATAAGTGCTCTTTTTTTTTGCATAAAAATGGCTTCATAGATGGAAAGGGAATAAC AAAATGCAGCTTTTCTTTTGTTGATGTTTGAAAATTTTAAAATTTCCCAATTGCTGCTAGGTCAAATTTCTTGGCGCACT CACAATATTTAGTATGTTTGATTTATAGTTTTTCATCAATTCTCCTACTTTCCGATACAAGCTAGTGGATATAAACATGG TTATCAATACAGAAACATGAAAGGGATGATGATCCTCCATTGAATTGGGTTTACGTTTTAGAAAGTTTCAATACAAACAT ACTCGCAATTGTCTCAAGCATCAGGAGGAGGCAACATTTGAATTTGTAATTCTTTGCAGAAGATTACGTTTAATGTTATG TAAATGTAGCATTCAGTATGAAATTGTATCCAACACAACTAAAGATTCATATTAATTGGTTCAATAATATAATTTCATTG AAATTCTTTTGTGGCTGTTCATTGTCTCTTATTAGTGCTCACTTTTAAGAAAAAGTATAAAATTTGAAAGTTGAGGTTTT CTCCCTCGAGCGTGGTGGTATGTGATGTGTCTGATGCCTTTTGTTTCTTTTTCTCTTGGGATCTGCATTTTGTGATTTTT ACCTAAAGATTCTGTGGCTTTGTAGGTTGAGCACGTGATGAGAGAGCAAAACGTTTTGGCTGCAAATGAGTTCATTGAGC TCTTCTGCGAATTAATTGTGGCCAGGCTCTCAATCATTTCAAAGCAGAGGTGAAGTATAGGGGAACTCAATTCATGGACA TGAAAGTAACATTTGAAATTCTAATGCTAATCCTTGTTTCAGGGTATGTCCAGCTGATTTGAAAGAAGGAATAGCTAGCG TAATCTTTGCAGCCCCTAGGTGCTCAGAAATCCCAGAACTTGTGGCTCTTAAAAATATTTTTGAGAAGAAATATGGGAAA GATTTTGTATCTGCAGCAACTGATCTTAGACCTAACTGTGGTGTAAATCGCCAGGTGAATCTTTTCTGGATTGCAATTTC GCGTGTGTTACTATAAAGAAGAGTCCTTTATGATTTGATGCTTCTTTGTCAAGAAACTACTGAACTGCTATTAATTTCTC AAAAGTATTCACTATCGTGGTTGTGAATTGCAATGTCTTTTAGTTGATCAACAAATTCTCAGTATCAACACCTAAACTTC TATTAAGTCTCAAAAGTATTAATATCCGTGCTTATGCATTGCAATGTCTTTTAGCTGATCGACAAGCTCTCAGTACGAAC ACCTCCTGGTGAGGTAAAGTTGAAAGTTCTGAAGGAAATAGCCAAGGAATATCAAATTGATTGGGATACTGCAGAATCTG AGCAAGAACTTCTGAAACCTCCAGAAGAGCTAATAGTATGTTTTCTGTCTATAATATCAAATTCTATGCTGTCTCAAAAT TTCATTGATAACATTCTGTCTCGGGTCAGGATGGGCACCGTACTTTTGTCAGCGCCAGCAGCTTACCTGTCAAGCCTTTA ACAGATGTGTCCACAGAATCAAATAATCCAACTACAAGGTGAATCTTATTATACCAATAGAATCAGATTAAGCTTGCTAC TTTTTGTTATCTTATTTCCTTATAGGATTGTGTGGTGACTAATCAGATTATCCGGTGGGGGAAAAAGCGATGCCGTGCAT TATGAAAATTCCAAGTCTGCTGCTGAAGCAGCAGCTGAAGCAGCTAAGAAAGCAATTGCTGCCGCAGAAGTTGCTGCTTA TATGGCTATGAAGGAACATAACGAAGCCCCTCAACCATACTTTTATAACTCAGGAGTGAACTCTGGGACCTTCCGATCAA ATGAACAGAACATGACTAGTCATAAATCATCAATTGAGGAGAAAATGCACAGGTCCTACAGCTTGCCAAGGTCTGACCAA ATGAACAGTGAAGAAGATAAATTGCCTACTCAATTCAATGATGGAAAGGACTACAGAAGACACAGCTACCATCCAACTTC TGCACATTCTGATATTAAGTTTGATGAATCAGATTGTGATGAAGAAATTGAAGCAGGAGAACCTTATGTTTCTTTGCCGC CTCAGCGACCTCCACCCCCTGCACCTTCGTCGCAGGTCAAAAGGGATGGTAGCATTCGAGTTCATCCCAAATTGCCAGAT TATGACGAACTTACTGCCCGTTTTGATGCTCTAAAATTCAAAAAGTCACAGTCCTGAACACACTGGAGCCAGTTTATCAG TACGTTTTTAATTCAGTCATATACGTATAGGAATGGTATATTTTGTCATATATAGAGATACTAAGAATGTCATGTTGGAT GCTATACTTGGGATGTATGATTCTGCAACTGCGTATTATATTTGTTCCTGATATATAAATTGTACTATTTTTTTGAAACT TGATTCTCAATAATAATGCAACTCTGGTCACATTTAGAAAACTGAAGTAGTGAAAATTATCATCATATTCTTTTGTGATA TTGAAGGACATTTTAGTGTAAATTTTTTAGAAATTATTATTTTATTATTTTA
CDS sequence (LotjaGi4g1v0134300.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGACGGTCGCCAGCGCAGCCGCATCACGCACCAAGAGGCTCGTCAAGCTCACCCTCGCCCTCCTCAGCCTCGGCTTCAA CTCCTCCAAATGCAAAACGGCGGCGAAGATGGCGGTGGCGAGGATCAAGCTGCTCAGGAACAAGAGGGAGGTGGTCGTCA GGCAAATGAGGCGTGACATTGCTCTCCTTCTCCAATCAGGTCAAGATGCCACTGCACGTATCAGGGTTGAGCACGTGATG AGAGAGCAAAACGTTTTGGCTGCAAATGAGTTCATTGAGCTCTTCTGCGAATTAATTGTGGCCAGGCTCTCAATCATTTC AAAGCAGAGGGTATGTCCAGCTGATTTGAAAGAAGGAATAGCTAGCGTAATCTTTGCAGCCCCTAGGTGCTCAGAAATCC CAGAACTTGTGGCTCTTAAAAATATTTTTGAGAAGAAATATGGGAAAGATTTTGTATCTGCAGCAACTGATCTTAGACCT AACTGTGGTGTAAATCGCCAGCTGATCGACAAGCTCTCAGTACGAACACCTCCTGGTGAGGTAAAGTTGAAAGTTCTGAA GGAAATAGCCAAGGAATATCAAATTGATTGGGATACTGCAGAATCTGAGCAAGAACTTCTGAAACCTCCAGAAGAGCTAA TAGATGGGCACCGTACTTTTGTCAGCGCCAGCAGCTTACCTGTCAAGCCTTTAACAGATGTGTCCACAGAATCAAATAAT CCAACTACAAGATTATCCGGTGGGGGAAAAAGCGATGCCGTGCATTATGAAAATTCCAAGTCTGCTGCTGAAGCAGCAGC TGAAGCAGCTAAGAAAGCAATTGCTGCCGCAGAAGTTGCTGCTTATATGGCTATGAAGGAACATAACGAAGCCCCTCAAC CATACTTTTATAACTCAGGAGTGAACTCTGGGACCTTCCGATCAAATGAACAGAACATGACTAGTCATAAATCATCAATT GAGGAGAAAATGCACAGGTCCTACAGCTTGCCAAGGTCTGACCAAATGAACAGTGAAGAAGATAAATTGCCTACTCAATT CAATGATGGAAAGGACTACAGAAGACACAGCTACCATCCAACTTCTGCACATTCTGATATTAAGTTTGATGAATCAGATT GTGATGAAGAAATTGAAGCAGGAGAACCTTATGTTTCTTTGCCGCCTCAGCGACCTCCACCCCCTGCACCTTCGTCGCAG GTCAAAAGGGATGGTAGCATTCGAGTTCATCCCAAATTGCCAGATTATGACGAACTTACTGCCCGTTTTGATGCTCTAAA ATTCAAAAAGTCACAGTCCTGA
Protein sequence (LotjaGi4g1v0134300.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MTVASAAASRTKRLVKLTLALLSLGFNSSKCKTAAKMAVARIKLLRNKREVVVRQMRRDIALLLQSGQDATARIRVEHVM REQNVLAANEFIELFCELIVARLSIISKQRVCPADLKEGIASVIFAAPRCSEIPELVALKNIFEKKYGKDFVSAATDLRP NCGVNRQLIDKLSVRTPPGEVKLKVLKEIAKEYQIDWDTAESEQELLKPPEELIDGHRTFVSASSLPVKPLTDVSTESNN PTTRLSGGGKSDAVHYENSKSAAEAAAEAAKKAIAAAEVAAYMAMKEHNEAPQPYFYNSGVNSGTFRSNEQNMTSHKSSI EEKMHRSYSLPRSDQMNSEEDKLPTQFNDGKDYRRHSYHPTSAHSDIKFDESDCDEEIEAGEPYVSLPPQRPPPPAPSSQ VKRDGSIRVHPKLPDYDELTARFDALKFKKSQS
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 16 | 16 | - | – | |
| Phobius | 1 | 31 | 31 | - | – | |
| PANTHER | 10 | 431 | 422 | 1.9E-191 | – | |
| PANTHER | 10 | 431 | 422 | 1.9E-191 | ||
| Phobius | 17 | 26 | 10 | - | – | |
| Gene3D | 20 | 207 | 188 | 9.6E-73 | ||
| Phobius | 27 | 31 | 5 | - | – | |
| Pfam | 32 | 196 | 165 | 6.9E-61 | ||
| Phobius | 32 | 433 | 402 | - | – | |
| MobiDBLite | 231 | 256 | 26 | - | – | |
| MobiDBLite | 231 | 247 | 17 | - | – | |
| Coils | 260 | 280 | 21 | - | – | |
| MobiDBLite | 307 | 411 | 105 | - | – | |
| MobiDBLite | 316 | 371 | 56 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Biological process | Protein transport | The directed movement of proteins into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. |
Expression pattern of LotjaGi4g1v0134300.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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