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| Field | Value |
|---|---|
| Gene ID | LotjaGi4g1v0134900 |
| Transcript ID | LotjaGi4g1v0134900.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | 50S ribosomal protein L5, putative; TAIR: AT4G01310.1 Ribosomal L5P family protein; Swiss-Prot: sp|O04603|RK5_ARATH 50S ribosomal protein L5, chloroplastic; TrEMBL-Plants: tr|I3SLN7|I3SLN7_LOTJA Uncharacterized protein; Found in the gene: LotjaGi4g1v0134900 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:19674446..19677818) extracted from Lotus japonicus Gifu genome v1.2.
GTGCATTTAAGCAAATTGCTCTCTCACACAAAGTCTAAAATGAGTTGCCATTGCACTCTTATGGATTAGATTGCTTGGAT GATGATGTTGTTCTTAGGGTGACTATTATACTCTAAATTTGATGTTTTCTCCCCCTTCCTAGGAGACTTGAAACTTGAAA GTTGAAACAAACACAATAGGATTGCTTTACCTTTTCACTTTGGTAATATTTACACTAGGTAAATAAGTTGAAGACTGCAC TCTAAACCCCTTTCCCTGCGTTTCCAAACAACATTATCCTTATCAGCTCAGAGAGTGAGCAGAGCACTGAGCTACCCACC ATGGCTACTACCACTCCTTCGCTGCTTCTACACTCATCTGGGTCTTCCTTTCTCGCTCAATTTCGTCCCTCTCCACCCCA ATTCTCTCCTCACGGAATCCGCCATGGAAATGCGGTGGTGTCCGTGAAAGCCACGGCTGCTGGGGCTGTGCTTGTGGAGA AGTCTGAGGCGGAAACGGTCTTCAGGCTCAAGAGAACTTACACTGAGAAAGTTATTCCCAAGCTTGTAGAAGAGTTCTCT TACACCAACATTCACCAGGTTTGGGGAAACTTGGTCCCCTTTTTCGTTATTGGAATTTCTTGTAGTTTACTGGTTTTGAG TTTTTGTTAGGTTTAGTAGCGAAATTTTGAATCTTTTTTGGTTTTGTTTTGATGGGGTTTTGCTGTTTTTTGCATCATAT GGTGGGGGGAATGTGATGGAGGCATGATAAGCTGCTGCTTTGATTTTATGGGGTTTGATGTTTCTTTTCACTTTGTGGCT TCTCTTTTGGTTTTGGGTTAGTGGGGGGGGGGGAGTGTTCAACTTTGGTATTGTACAGTGGGGAACATGAAGTGGAGGCA TGATTAGTTGATTTGGTTTCATGGGGTTTTCACTGTGAGTTCTTCTCCTTCTTTTATTAGTTAATGGGATTTTTAAATTT TGGTGTCATGTAGTGTGGAAGATGAGATGGGTGCATGAAATTGGCTTCCCTTCAATTTTGTAATGTTGGGGAATGAATTA TGTCAGATGAATTTGTCATGTGAAAATTTTCATCTCTCTTTGTTTTCGTAAATATTGACGTGATCCACATATTTAATACA TGTAAAGAAAGATATAGACATCAAATTCCAATTTGTAATGCAAAATTTCAATGTAAAAGGTCTTGATTCACAATGTTGGG TTTGTTTTCCATGGTTACAGGTTCCTAAAGTTAAGAAGATTGTGGTTAACTGCGGTATTGGAGAGGCTGCGCAGAATGCA AAAGGTTTGGATGCGGCAGTTAATGATCTAGCACTGATCACAGGGCAGAGACCTGTTAAGACTCGGGCTAGGACTTCTGT TGCCACCTTCAAGATCAGGGAAGGTCAACCGCTTGGGATTGCTGTGACACTCAGAGGAAAAGTGAGCTTTTAGAATTCAA TTGATAGTGCATTACGATTAACATATTTAATTTCAATGTAGTTACTAGTTATTACTGAGTTTGCTTGTGTTCTAGCTATC ATGACCCTACATTTTTCCACGGTAGATTATATTAGAACAATGTGGGTCTCTACTCTCTAGATGTTGTTAGCTTGTTATAA TCAGCTGCTACAGTACTAATACTTTAGGTTATCATTTTCCTAATTAGTTTTGTTGATTTGCTGGTATACTTAAGATGTTT TGGTAAAGGAACTGTGATTATTGCTGATGCGCTGCCGAGAGACTACTATGAAACATGTTTCTACTTTCTACTAATTTTAA CTTGTCTAGTATGAATGTATGATGCTTTTTGGGATCTTGTGTAAGTTTTTCATGTCTCTCAAGACAAGTAGAATGAAACA TGAGTATTTGAGTTTCTTAATATAGTTCAATGAGGGATAACATGATTATGGAATGACTTCATGCCTTTATTAACATATTT GTTTGATCATGTAAGGTAGAGCCGTAGAGGTAGTAGCAGCTATTCTGAATGTTGATTGGTAATGGACTCATGGCCAACTA TGCTAAATAACTTTTCACAAATGCACACCTTCCATACTTGTGATTTCAAAAGTAAACTAAAACGGGTAGTTGTAGTTTCT CTGTAGTTTTCTAGTGTATATATTCGTGTTGTTGGAAATATTCTCTGTTTGCATATATATGCTTTCGATTAATCAGACGT TATCTTGTAATGGAAAATGTTTCCATATAAAACATAATCCTCCACTTAGTAGAACAGAAGAATGTGACATTATTATCCTT TATCTTGAACATGGTACTCCATGACTCAAAGGTTAAAGTAAAATTTAGTTTTTTCTTTTGTTTCGTTTGTGTTCTGGGAG GGGGTTGAAATTTTCTTTTTCACTATACTGACCATTTGTATTGTATTTTCAATACGACTTTAATGAAGAGTATCGTCACC AATTACCAGTATTTACTGAATGAGGGAGTTTCTCAATTGTTCAAATTTGATGATATGTTGCAATACATGTGAAATTGATA TCTGCTTGATCTTTTCTTCATTAAAAAAGAATTGTAAGTACGTTATAATTCTCCATGGAGTACTAAATGCTAGCATTCTA GCTTTTCATTAAGCTCACATTCTAGCATATTATGCTAGCTGCATTCATTGTTTTTATATAGCCGAAATATAATACCTATT GTATGACTATTTACAGGTGATGTACTCATTCCTAGATAGACTTGTCAACTTGGGATTTCCCAGGACAAGAGATTTCCAAG GTGTGAACACCAGCAGCTTTGATGGGCATGGGAATTTCAACATTGGCATTAAGGACCAGGGTGTGTTCCCAGAGATCAGA TTTGATGTTGTTGGTAAGCCTAGAGGAATGGATGTCTGCATTGAAACAACGGCTGAAACTGATAAAGAAGCACAAAGGTT ATTGGCTCTTCTGGGTATGCCATTCAGAGAGGGAGGTGGTTCTTCTGCCACCGCACTTCCCAAAAAGAAGCTGAAGTCTC ATCATTTTGATCCAAAAGCAAAGGGAAAAGTTAGGAAGTGACACAATTTTGATGCAAAATCATGGGGCAAGGGAACGAGG GTTGTGACCCCAAGAAACATTATGTTGTATACCTTGTTCCATTCAGATGTAATAACATTGATTCTTTTTGTAAGAGATAT GGATATGACATCAGTGATGTCTTTCAAGGTTGTATAATGGCCATGCAGATCTTACTTGCTAACTGATTTCCATTTATTTC TATACCATTTAGTTTAATAGACAATGATTTTGGTTATGTCTATTCATTCTTCTACAATATGCATTATTGACTACTCGTCT CTGAATTCAAATCTTAAGTCAACCCTTTGTAAATACACCAAACTAATTGCAAAGGTCTGGGCTCTTAAAATTACAAGAAA AAAGTAGGTCTGT
CDS sequence (LotjaGi4g1v0134900.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCTACTACCACTCCTTCGCTGCTTCTACACTCATCTGGGTCTTCCTTTCTCGCTCAATTTCGTCCCTCTCCACCCCA ATTCTCTCCTCACGGAATCCGCCATGGAAATGCGGTGGTGTCCGTGAAAGCCACGGCTGCTGGGGCTGTGCTTGTGGAGA AGTCTGAGGCGGAAACGGTCTTCAGGCTCAAGAGAACTTACACTGAGAAAGTTATTCCCAAGCTTGTAGAAGAGTTCTCT TACACCAACATTCACCAGGTTCCTAAAGTTAAGAAGATTGTGGTTAACTGCGGTATTGGAGAGGCTGCGCAGAATGCAAA AGGTTTGGATGCGGCAGTTAATGATCTAGCACTGATCACAGGGCAGAGACCTGTTAAGACTCGGGCTAGGACTTCTGTTG CCACCTTCAAGATCAGGGAAGGTCAACCGCTTGGGATTGCTGTGACACTCAGAGGAAAAGTGATGTACTCATTCCTAGAT AGACTTGTCAACTTGGGATTTCCCAGGACAAGAGATTTCCAAGGTGTGAACACCAGCAGCTTTGATGGGCATGGGAATTT CAACATTGGCATTAAGGACCAGGGTGTGTTCCCAGAGATCAGATTTGATGTTGTTGGTAAGCCTAGAGGAATGGATGTCT GCATTGAAACAACGGCTGAAACTGATAAAGAAGCACAAAGGTTATTGGCTCTTCTGGGTATGCCATTCAGAGAGGGAGGT GGTTCTTCTGCCACCGCACTTCCCAAAAAGAAGCTGAAGTCTCATCATTTTGATCCAAAAGCAAAGGGAAAAGTTAGGAA GTGA
Protein sequence (LotjaGi4g1v0134900.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MATTTPSLLLHSSGSSFLAQFRPSPPQFSPHGIRHGNAVVSVKATAAGAVLVEKSEAETVFRLKRTYTEKVIPKLVEEFS YTNIHQVPKVKKIVVNCGIGEAAQNAKGLDAAVNDLALITGQRPVKTRARTSVATFKIREGQPLGIAVTLRGKVMYSFLD RLVNLGFPRTRDFQGVNTSSFDGHGNFNIGIKDQGVFPEIRFDVVGKPRGMDVCIETTAETDKEAQRLLALLGMPFREGG GSSATALPKKKLKSHHFDPKAKGKVRK
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 18 | 18 | - | – | |
| Phobius | 1 | 1 | 1 | - | – | |
| Phobius | 2 | 10 | 9 | - | – | |
| Phobius | 11 | 18 | 8 | - | – | |
| Phobius | 19 | 267 | 249 | - | – | |
| Hamap | 60 | 238 | 179 | 40.077 | ||
| SUPERFAMILY | 62 | 237 | 176 | 2.59E-68 | ||
| Gene3D | 62 | 236 | 175 | 2.5E-73 | ||
| PANTHER | 63 | 238 | 176 | 2.1E-78 | – | |
| PANTHER | 63 | 238 | 176 | 2.1E-78 | ||
| Pfam | 83 | 139 | 57 | 1.6E-25 | ||
| ProSitePatterns | 116 | 132 | 17 | - | ||
| Pfam | 143 | 236 | 94 | 6.7E-33 | ||
| MobiDBLite | 240 | 267 | 28 | - | – | |
| MobiDBLite | 249 | 267 | 19 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Structural constituent of ribosome | The action of a molecule that contributes to the structural integrity of the ribosome. | ||
| Cellular component | Ribosome | An intracellular organelle, about 200 A in diameter, consisting of RNA and protein. It is the site of protein biosynthesis resulting from translation of messenger RNA (mRNA). It consists of two subunits, one large and one small, each containing only protein and RNA. Both the ribosome and its subunits are characterized by their sedimentation coefficients, expressed in Svedberg units (symbol: S). Hence, the prokaryotic ribosome (70S) comprises a large (50S) subunit and a small (30S) subunit, while the eukaryotic ribosome (80S) comprises a large (60S) subunit and a small (40S) subunit. Two sites on the ribosomal large subunit are involved in translation, namely the aminoacyl site (A site) and peptidyl site (P site). Ribosomes from prokaryotes, eukaryotes, mitochondria, and chloroplasts have characteristically distinct ribosomal proteins. | ||
| Biological process | Translation | The cellular metabolic process in which a protein is formed, using the sequence of a mature mRNA or circRNA molecule to specify the sequence of amino acids in a polypeptide chain. Translation is mediated by the ribosome, and begins with the formation of a ternary complex between aminoacylated initiator methionine tRNA, GTP, and initiation factor 2, which subsequently associates with the small subunit of the ribosome and an mRNA or circRNA. Translation ends with the release of a polypeptide chain from the ribosome. |
Expression pattern of LotjaGi4g1v0134900.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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