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LotjaGi4g1v0139300.2

Overview

Field Value
Gene ID LotjaGi4g1v0139300
Transcript ID LotjaGi4g1v0139300.2
Related isoforms 1
Lotus japonicus genome version Gifu v1.2
Description DNA-directed RNA polymerase II subunit; TAIR: AT1G06790.1 RNA polymerase Rpb7 N-terminal domain-containing protein; Swiss-Prot: sp|Q9Y535|RPC8_HUMAN DNA-directed RNA polymerase III subunit RPC8; TrEMBL-Plants: tr|A0A151SJW3|A0A151SJW3_CAJCA DNA-directed RNA polymerase III subunit rpc8; Found in the gene: LotjaGi4g1v0139300
Working Lj name n.a.

Sequence information

Genomic sequence (LjG1.1_chr4:20752127..20757612) extracted from Lotus japonicus Gifu genome v1.2.

TCCTCTTTCTCTCACACTATAGTCACTATTAGTCAGATCTCTCTCCTCTCACAGTCACCACGCACGCACTCTGCACTCAC GCTCTCATTCTCTGATTTCCCAAGCTGGCCAAGCACCACCACCGGCCACCACCACGCCGGTCGCCGCCGCCGCACCACCA CGTGCCACTCTCCAGCCGTGCGCCCCTGCCTTTGGCTGTGCCTCTGCGGTTCTAATTTCTACAGGTATGGGCATGGCTGA TTTTTTCCTAACCCTAATTTCTGTTTTTCCCCTAATTTCTAAAGTTATAATCTTCTAATTCTTCTCACCTGTTCAATTTG TTTATCCTAGTTTCTTGTTTTCAAGATTTTCCCCTTCAATTCCAAGTTCAAATTTATATTTTCTTTTTTTGAATCAACAA CTTGTTTCATTCTTTTCCATTGACGTTGAATGTAACTTATTCCAAACACAAACTACATTCATCCTCAGCAATGATATAAT GACCAAATAGCATCAATTGGCACGAAAAGAATGACCTAAAATTACCACTAGTAATAGTTATATTGTATGAAATGGCAATC TTTGTACATCATGCAGCTCATACAAATAATCATATACAACTCCTGCCCGGGTCCTCGCACTGAGATAGCCATAGCCCATA AGTCCATATGCTCTATGATCTTTTGCCTAACTTTGTGAACTGCATCAGGTGATCAGGGGATGTGCACTTCTTCTCATTAC CTTAAATGTTAAACGGATATAGTGTTGATACATTTTAAATTTATACTTTCATTTCAAATTTGTTTCATTTACTGGAATAA TTTTAGTGTTGCCTATATTGAAAAGAATTGAGTTAGAACTGAAAATACATTGACTATTTGATTGTGTTGAGCTGCAAGCA TCATGGTTTTGTTGATTTATAAATAATGGCATGGTGAGCACCAACATGTGATGGATCGCTTGCTATATCTTACAGGGTGT TTTGTCTTTTGTAACCTATGGTGTTACTGTATCATCTTTTGCTTTCTTGGGGCTGGGTAGTAAGGTAGTTATTAATGTTG TTTGGATAACTTAACTATGAAGTATGTTGCTGTCCTTAGTTCTTAGTGATTACTTGGGTCTGATTTGTGTGTAAGGTAAT TGATTTCTCAAACGTTGTATTGCTGTTAGCACTCCTTGTGCTTGATTTTAATGAATGCTTTGCTTATCAAAAATAAATAA ATAATGGCATGGTAACTTGCCATTCCAATTGGCAGCTCAATTGTTTGTATATGCAAGCTGCTGCAAATTACCTTGTTCTG ATATGAATCAAAGTGTTTAATTAAATGCTTAATTATATTATTAATCCTCTTTCTTTTGTTAAAATAGAGTAGTGCTGCCA TGTTTTTACTGATTATTGTATGTTTTTAATTTTAGGAAGGTCATAGACAAATTTGAACCCCCTGACCCCGGGGTCCTGGA TCCGCCACTGGGTTATATGACTCAGTGGACCAAAAATAAAGGGCAACTGACAAACTCTTAGAAGGGTATGAGTCTCAATG TCATAAACATAGGGTAAAATACCTAAAGTTTTTTCAGTTACCATGTTTCTGAATACCTTCAGATTATTCTTTCCAATAAG CAAGCATCATCAGCTTCCCATAAACTTCTTAAACCGATTTGTTTGTTTTCTTAATTGCAGTTTTGTTCTGTCCATTCTTA TAAGGAGACAAGAATAAAATTAATTTTTCTTTATGAAATTGTTGAGAGTTCAGGCTTAGGTTTAACTTTTATGTCTCTGA AGTTATGAAATTGCATGATAAATGTCTAATTGGCAGATATCTAACTGCTTTTCTTGGTAAGTTACAGTAACTTCAACGTC ATAAGTACATGGCTAAGGATGCTTTGATTTTAATATATTTTTATCTAGTCTTACTCTTAGCTAGATTTGGCTATGCGAGA AATCCGTTAAGTAAAAATGAAAGTTATATATGCAACTGAAAGCTGCTAATGAAAGTATTGGAAGTCGGAACTGATTAAAA AAAATGCTTTGAGAAAAGCTTCTGCTTTGCAAGTCAGCAGCTTATATGTTTGGCTTTATGCTCGATCATTTACTGTGGCA TTTATCTTTTATTTTTATGTGCAGCTGTGGATTTCTTTAATCAAGTGAATATCCTGTTTGGTACGCTTACAGAATTATGT ATGCCAAATAACTGTCCTTCAATGACTGCAGGACCAAAGTATAGTTTGATCCTACACCAAAACTTTTCTTATTTTAGTTT CATATTGTTGTTGCAGCTAGATCAGATTAGTTGTTATATCAATATGTATCTTTTATTCTTCAACAATAATCCTTTCACAC CCATTCCACCCACACCCCGAGATAAGAACAAAAGTGAGAGAAAAGTGAGATATGATTGATGATGTGATAGGAAAAGAAGA AGAGATAGGAAGAGAAAGTGGGTGGAAAAGTATGGTGTGAATATATGAAAACCCTTTATTCTTGTTGGCATGTCTGCAAT ATATTTACACCAATGGGCTTTAGGAACTTGTAGCTTATGATAGGTAATATTGATGAATGTTTTTAGTGTTCATGATGTAC TGAATTACTGATATGATACGCACCACTTTCCTTCTAAATTAAGTACATATACTATACTGTTTCTTTTTGCAATTTGACAA TTTGTTATCTTTTGCTGCAGTACAAACGAAACTAATATCAAAATTGGAAGAACTTGTATCTCCCCTTTGGCAATTAGCAG TGAAGCTCCGCTGGTCAAGGAAACAAATACTTTATTTTGTGGTTGTCCCTAATATTAAGAATCCTAACATATTTCCTCTG GACCTCCTCGGACTCTGTAATTTGGTTCAGGCAAAATGTTCTATCTCAGTAGAATTGAGCATAAATTGCCCTTGCCTCCT CCTCTTCTTGCCCTTCCCCTCCGAGAAGGCATACACATAGAGCTTGAGAAGCTTTTCTTGGATAAGGTTTTTGGTGCTAC CCTTTTCAGTTTCATTTTCGACTCATTTTGTGGAATATATTTGACTTGATTCCATTGGCTTCATCTTGGGTTTTTGTAAT CATTTCAGGTTATTGCAAACTTGGGCCTTTGCATATCTGTTTATGATATCAGATCCATTGAGGGGGGGTTTATCTACCCT GGTGATGGTGCTCCGACTTATAAGGTATGAATTCATGGGTTGGTTTTGAACTTTTTACTGTAACATTGAATTTAAAGTTC TACATGATGGAAGTACAAAACTGAATGCAGGTCTAAGTTCAGTAAATTATTCTTTCTGCTCTTAACTGAATAGTTTAGCT TTATTTTTTACTTTATCCAGAAAAAAATCACCTACTTAAGTTTTCTGTATGGACACAAAAGTGTTGTTATGTTTACTTTA AATTTGTATTTATGGACACAAACTGTTGTTTTGCTTGTGTTATTATAATGAGTTATTTTTTGTATCTTTGGGACATACGA AAGTTGTGGTTTAATTTGGCTCCCTCATTTACAACTTTCTGATGTATAAGGCAATGTTTTGTAGATTGATATAGAAGTTT GTATGTGATTGTTTACGTCTATACACTAAATGTATTCTGGAATTTCTGACAGGTGGTATTCAATTTGATTATGTTTCGTC CATTTGAAGGGGAGATTATTACTGCAAAGCTTCTTTCATCTGATGAAGACGGCTTGCGCTGTATGTATTCAATTTTCAGC TGGTTCCTTGATTGTAACTTTCAATCGATATATTACATACAAGATGGTTAAAATTAAAATACAACATACACGATAGTACA AGATCAGTTACTTTAATTCATCGGCTTGGCACGCTATATGAAGTTTTCTTTCATGCTGTTACTCTGTTAGTTAGGTATCC ATTTTATATGTATTTTCATATGAGATGCGGCTTTAGAATTTTGCTACTGTGACAAGTACTCTGCCCTGACGTCTTTGCTA TTCCATTTTTCCCCATATGTTCCAATATGTGGATTCAAAACTTAATATGAGCCAATGACTCAATGTGTAAATTAATTGAA GCTCCAATCATGTATAGGCATGAATAACTTGACCCTTCAAGTTGAATTGTTACCAAAGCTAATTTTCTGCTTTAGACTTT TGTATTCATATCATGACACTGAGAGAGACATATTTTTTTTTTTGCATCATGTAACAATGCCATCCAAGATTTGCATCCTC TAAAAATTTAACTGATTTCCAAATGTTTGTGTTTTAAATTAGTCCCTTCTGATGTTGAATCTGTTGTTGGCAGTGTCCCT TGGATTCTTCGATGATATTTATATTCCTGCTCACAACCTGCCCAGCCCAAACCACTTTGAGGCTGAACCAATAAATAGGT GATGTTGCCTCTATTTACTTTTACTTTTTGGGATGAACTTTGGATGTTATACCAAAGTATATCCGCATAAACTGTTTCAT TTTTTTAAAGCATAATACATTCTTTCATTATGTATGTTCAACATTGTGCTTATACGGTTTAGATATAAACTACAGCAAGA AAGGCACATGGTATTGGAATTATGGGGATCAACCTTTTCCTATTGATGATACTAATGAGGAGATCAAGTTCCAAATTCAG AGTGTGAGTTACCCACCGATTCCAGTTGAACTTCCAAAAGACTCCAAGCCATTTGCCCCTATGTTGATCACTGTAAGTAT TTTGTTGTTCAACATTTTTCCTCTGCTTTGTTAACCTTGGTTTAATCGAAGTTTTTACTTTATAATTTGATGTTATCTTT AGGATGGTTCAATCATTTATGATTCTAGTAATTTAATTCAGATTGCTTTTACAGCTTCAAATCATTTATCATTATAATTT ATTGTTTGCAAAAAAGTTAGTAGCCTCTTTCGCAGTCGTTTACACCATTAAAAGATTCGTTTATATTAAATTATACAAAG TATAATACTTGCATATTTATTTGTTAGCAAAGGGTTATGTAGCTTTTGAAATAAGAGGGGAGAGTGTAATTCAAGCAGGA GGGAAGGGACAGTGATTTACTCTATTTTTTTTGCAATGCATCATCACATATCTCTTGATAATGGATTGAAATCCCATCAA TTGTATTCGCAACAAATCGATGCAGTTCAGTTTCTTTCAAAGCACTGGTGTTTGAACTTCTTGTTATATACATGCTAGCA TTGCACATTTATAGAAGATTGATCTGATATCTATTTTATAGGGATCAATAGATTTTGATGGTCTGGGCCCTGCTTCTTGG TGGCCAACAGAAGAGGTTGAGGACGAGGAAACGCAAATTGAAGAAAGTTAAACCTTTGTCAAGTGATGTATTCATTGCAA GTTTATGCTCGGTGCTTAGAAGAAAGTGGTCGCTGCTTGAATGATTCAATGCATATTTTAAAGATTATTCATTATTGGCT TAATTGCACTTTTCATCCCTGATATATACCCCTTGTGCAATTTTGGTCCCCTTTATTTAAAAGGAGCAATTTTAGTACAT CAAAGATTAGGATGTGACAATTAGGTCCACCGTTAGCTTCCATCCA
Download Genomic Sequence

CDS sequence (LotjaGi4g1v0139300.2) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGTTCTATCTCAGTAGAATTGAGCATAAATTGCCCTTGCCTCCTCCTCTTCTTGCCCTTCCCCTCCGAGAAGGCATACA CATAGAGCTTGAGAAGCTTTTCTTGGATAAGGTTATTGCAAACTTGGGCCTTTGCATATCTGTTTATGATATCAGATCCA TTGAGGGGGGGTTTATCTACCCTGGTGATGGTGCTCCGACTTATAAGGTGGTATTCAATTTGATTATGTTTCGTCCATTT GAAGGGGAGATTATTACTGCAAAGCTTCTTTCATCTGATGAAGACGGCTTGCGCTTGTCCCTTGGATTCTTCGATGATAT TTATATTCCTGCTCACAACCTGCCCAGCCCAAACCACTTTGAGGCTGAACCAATAAATAGCAAGAAAGGCACATGGTATT GGAATTATGGGGATCAACCTTTTCCTATTGATGATACTAATGAGGAGATCAAGTTCCAAATTCAGAGTGTGAGTTACCCA CCGATTCCAGTTGAACTTCCAAAAGACTCCAAGCCATTTGCCCCTATGTTGATCACTGGATCAATAGATTTTGATGGTCT GGGCCCTGCTTCTTGGTGGCCAACAGAAGAGGTTGAGGACGAGGAAACGCAAATTGAAGAAAGTTAA
Download CDS Sequence

Protein sequence (LotjaGi4g1v0139300.2) extracted from Lotus japonicus Gifu v1.2 Proteins.

MFYLSRIEHKLPLPPPLLALPLREGIHIELEKLFLDKVIANLGLCISVYDIRSIEGGFIYPGDGAPTYKVVFNLIMFRPF EGEIITAKLLSSDEDGLRLSLGFFDDIYIPAHNLPSPNHFEAEPINSKKGTWYWNYGDQPFPIDDTNEEIKFQIQSVSYP PIPVELPKDSKPFAPMLITGSIDFDGLGPASWWPTEEVEDEETQIEES
Download Protein Sequence

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

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Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PANTHER
PTHR12709
1 195 195 5.0E-62 –
PANTHER
PTHR12709:SF1
1 195 195 5.0E-62 –
Gene3D
G3DSA:3.30.1490.120
1 79 79 3.8E-24
IPR036898
SUPERFAMILY
SSF88798
1 78 78 4.19E-18
IPR036898
Pfam
PF03876
9 77 69 1.4E-10
IPR005576
SUPERFAMILY
SSF50249
79 188 110 1.11E-7
IPR012340
Pfam
PF08292
79 161 83 1.4E-17
IPR013238
Gene3D
G3DSA:2.40.50.140
80 200 121 1.2E-26 –

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0006351
Biological process Transcription, DNA-templated The cellular synthesis of RNA on a template of DNA.
Subterm of
Part of

Genome browser

Expression data

Expression pattern

Expression pattern of LotjaGi4g1v0139300.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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