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IPR005576

Source: InterPro

Description

IPR005576 is a RNA polymerase Rpb7-like , N-terminal.

<p>Rpb7 is a subunit of eukaryotic RNA polymerase (RNAP) II that is homologous to Rpa43 of RNAP I, Rpc8/Rpc25 of RNP III, and RpoE of archaeal RNAP. Rpb7 binds to Rpb4 to form a heterodimer. This complex is thought to interact with the nascent RNA strand during RNA polymerase II elongation [[cite:PUB00007873]] and plays a part in transcription, mRNA transport and DNA repair [[cite:PUB00093697]]. In RNA polymerase I, Rpa43 is at least one of the subunits contacted by the transcription factor TIF-IA [[cite:PUB00010209]]. The N terminus of Rpb7 and homologues has a SHS2 domain that is involved in protein-protein interaction [[cite:PUB00057445]].</p>

This description is obtained from EB-eye REST.

Associated GO terms

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0006351
Biological process Transcription, DNA-templated The cellular synthesis of RNA on a template of DNA.
Subterm of
Part of

Associated Lotus transcripts 13

Transcript Name Description Predicted domains Domain count
Lj0g3v0128599.1
– PREDICTED: DNA-directed RNA polymerase II subunit RPB7-like isoform X2 [Cicer arietinum] gi|502116157|ref|XP_004495325.1|
Domains
9
Lj2g3v0039360.1
– DNA-directed RNA polymerase II subunit RPB7 [Glycine max] gi|351722267|ref|NP_001236982.1|
Domains
12
Lj2g3v1984950.1
– DNA-directed RNA polymerase II subunit RPB7 [Glycine max] gi|351722267|ref|NP_001236982.1|
Domains
12
Lj4g3v1062200.1
– PREDICTED: DNA-directed RNA polymerase III subunit rpc8-like [Glycine max] gi|356572779|ref|XP_003554543.1|
Domains
10
LotjaGi2g1v0020200.1
– DNA-directed RNA polymerase II subunit; TAIR: AT5G59180.1 DNA-directed RNA polymerase II; Swiss-Prot: sp|P46279|RPB7_SOYBN DNA-directed RNA polymerase II subunit RPB7; TrEMBL-Plants: tr|I3SGA6|I3SGA6_LOTJA Uncharacterized protein; Found in the gene: LotjaGi2g1v0020200
Domains
14
LotjaGi2g1v0020200.2
– DNA-directed RNA polymerase II subunit; TAIR: AT5G59180.1 DNA-directed RNA polymerase II; Swiss-Prot: sp|P46279|RPB7_SOYBN DNA-directed RNA polymerase II subunit RPB7; TrEMBL-Plants: tr|I3SGA6|I3SGA6_LOTJA Uncharacterized protein; Found in the gene: LotjaGi2g1v0020200
Domains
14
LotjaGi2g1v0414900.1
– DNA-directed RNA polymerase II subunit; TAIR: AT5G59180.1 DNA-directed RNA polymerase II; Swiss-Prot: sp|P46279|RPB7_SOYBN DNA-directed RNA polymerase II subunit RPB7; TrEMBL-Plants: tr|A0A0G2T569|A0A0G2T569_9ROSI DNA-directed RNA polymerase II non-catalytic subunit; Found in the gene: LotjaGi2g1v0414900
Domains
14
LotjaGi2g1v0414900.2
– DNA-directed RNA polymerase II subunit; TAIR: AT5G59180.1 DNA-directed RNA polymerase II; Swiss-Prot: sp|P46279|RPB7_SOYBN DNA-directed RNA polymerase II subunit RPB7; TrEMBL-Plants: tr|I1K337|I1K337_SOYBN Uncharacterized protein; Found in the gene: LotjaGi2g1v0414900
Domains
14
LotjaGi2g1v0414900.3
– DNA-directed RNA polymerase II subunit; TAIR: AT5G59180.1 DNA-directed RNA polymerase II; Swiss-Prot: sp|P46279|RPB7_SOYBN DNA-directed RNA polymerase II subunit RPB7; TrEMBL-Plants: tr|I1K337|I1K337_SOYBN Uncharacterized protein; Found in the gene: LotjaGi2g1v0414900
Domains
14
LotjaGi4g1v0139300.1
– DNA-directed RNA polymerase II subunit; TAIR: AT1G06790.1 RNA polymerase Rpb7 N-terminal domain-containing protein; Swiss-Prot: sp|Q9Y535|RPC8_HUMAN DNA-directed RNA polymerase III subunit RPC8; TrEMBL-Plants: tr|A0A151SJW3|A0A151SJW3_CAJCA DNA-directed RNA polymerase III subunit rpc8; Found in the gene: LotjaGi4g1v0139300
Domains
12
LotjaGi4g1v0139300.2
– DNA-directed RNA polymerase II subunit; TAIR: AT1G06790.1 RNA polymerase Rpb7 N-terminal domain-containing protein; Swiss-Prot: sp|Q9Y535|RPC8_HUMAN DNA-directed RNA polymerase III subunit RPC8; TrEMBL-Plants: tr|A0A151SJW3|A0A151SJW3_CAJCA DNA-directed RNA polymerase III subunit rpc8; Found in the gene: LotjaGi4g1v0139300
Domains
12
LotjaGi5g1v0185800.1
– DNA-directed RNA polymerase II subunit; TAIR: AT4G14660.1 RNA polymerase Rpb7-like, N-terminal domain-containing protein; Swiss-Prot: sp|A6QRA1|NRPE7_ARATH DNA-directed RNA polymerase V subunit 7; TrEMBL-Plants: tr|I3SJ91|I3SJ91_LOTJA Uncharacterized protein; Found in the gene: LotjaGi5g1v0185800
Domains
10
LotjaGi5g1v0185800.2
– DNA-directed RNA polymerase II subunit; TAIR: AT4G14660.1 RNA polymerase Rpb7-like, N-terminal domain-containing protein; Swiss-Prot: sp|A6QRA1|NRPE7_ARATH DNA-directed RNA polymerase V subunit 7; TrEMBL-Plants: tr|I3SJ91|I3SJ91_LOTJA Uncharacterized protein; Found in the gene: LotjaGi5g1v0185800
Domains
10

Co-occuring domains 1

A list of co-occurring predicted domains within the L. japonicus gene space:

Predicted domain Source Observations Saturation (%)
SSF88798 SUPERFAMILY 1 7.69