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IPR036898 is a RNA polymerase Rpb7-like, N-terminal domain superfamily.
<p>The eukaryotic RNA polymerase subunits RPB4 and RPB7 form a heterodimer that reversibly associates with the RNA polymerase II core, being involved in initiation complex formation [[cite:PUB00081608]]. Archaeal cells contain a single RNAP made up of about 12 subunits, displaying considerable homology to the eukaryotic RNAPII subunits. The RPB4 and RPB7 homologues are called subunits F and E, respectively, and have been shown to form a stable heterodimer. While the RPB7 homologue is reasonably well conserved, the similarity between the eukaryotic RPB4 and the archaeal F subunit is barely detectable [[cite:PUB00007873]].</p> <p>This entry represents the N-terminal, heterodimerisation domain superfamily of RPB7 and homologues. This domain has a β-α-β(2) fold arranged in two layers (α/β) with antiparallel β-sheet.</p>
This description is obtained from EB-eye REST.
| Transcript | Name | Description | Predicted domains | Domain count |
|---|---|---|---|---|
| – | DNA-directed RNA polymerase II subunit; TAIR: AT5G59180.1 DNA-directed RNA polymerase II; Swiss-Prot: sp|P46279|RPB7_SOYBN DNA-directed RNA polymerase II subunit RPB7; TrEMBL-Plants: tr|I3SGA6|I3SGA6_LOTJA Uncharacterized protein; Found in the gene: LotjaGi2g1v0020200 | 14 | ||
| – | DNA-directed RNA polymerase II subunit; TAIR: AT5G59180.1 DNA-directed RNA polymerase II; Swiss-Prot: sp|P46279|RPB7_SOYBN DNA-directed RNA polymerase II subunit RPB7; TrEMBL-Plants: tr|I3SGA6|I3SGA6_LOTJA Uncharacterized protein; Found in the gene: LotjaGi2g1v0020200 | 14 | ||
| – | DNA-directed RNA polymerase II subunit; TAIR: AT5G59180.1 DNA-directed RNA polymerase II; Swiss-Prot: sp|P46279|RPB7_SOYBN DNA-directed RNA polymerase II subunit RPB7; TrEMBL-Plants: tr|A0A0G2T569|A0A0G2T569_9ROSI DNA-directed RNA polymerase II non-catalytic subunit; Found in the gene: LotjaGi2g1v0414900 | 14 | ||
| – | DNA-directed RNA polymerase II subunit; TAIR: AT5G59180.1 DNA-directed RNA polymerase II; Swiss-Prot: sp|P46279|RPB7_SOYBN DNA-directed RNA polymerase II subunit RPB7; TrEMBL-Plants: tr|I1K337|I1K337_SOYBN Uncharacterized protein; Found in the gene: LotjaGi2g1v0414900 | 14 | ||
| – | DNA-directed RNA polymerase II subunit; TAIR: AT5G59180.1 DNA-directed RNA polymerase II; Swiss-Prot: sp|P46279|RPB7_SOYBN DNA-directed RNA polymerase II subunit RPB7; TrEMBL-Plants: tr|I1K337|I1K337_SOYBN Uncharacterized protein; Found in the gene: LotjaGi2g1v0414900 | 14 | ||
| – | DNA-directed RNA polymerase II subunit; TAIR: AT1G06790.1 RNA polymerase Rpb7 N-terminal domain-containing protein; Swiss-Prot: sp|Q9Y535|RPC8_HUMAN DNA-directed RNA polymerase III subunit RPC8; TrEMBL-Plants: tr|A0A151SJW3|A0A151SJW3_CAJCA DNA-directed RNA polymerase III subunit rpc8; Found in the gene: LotjaGi4g1v0139300 | 12 | ||
| – | DNA-directed RNA polymerase II subunit; TAIR: AT1G06790.1 RNA polymerase Rpb7 N-terminal domain-containing protein; Swiss-Prot: sp|Q9Y535|RPC8_HUMAN DNA-directed RNA polymerase III subunit RPC8; TrEMBL-Plants: tr|A0A151SJW3|A0A151SJW3_CAJCA DNA-directed RNA polymerase III subunit rpc8; Found in the gene: LotjaGi4g1v0139300 | 12 | ||
| – | DNA-directed RNA polymerase II subunit; TAIR: AT4G14660.1 RNA polymerase Rpb7-like, N-terminal domain-containing protein; Swiss-Prot: sp|A6QRA1|NRPE7_ARATH DNA-directed RNA polymerase V subunit 7; TrEMBL-Plants: tr|I3SJ91|I3SJ91_LOTJA Uncharacterized protein; Found in the gene: LotjaGi5g1v0185800 | 10 | ||
| – | DNA-directed RNA polymerase II subunit; TAIR: AT4G14660.1 RNA polymerase Rpb7-like, N-terminal domain-containing protein; Swiss-Prot: sp|A6QRA1|NRPE7_ARATH DNA-directed RNA polymerase V subunit 7; TrEMBL-Plants: tr|I3SJ91|I3SJ91_LOTJA Uncharacterized protein; Found in the gene: LotjaGi5g1v0185800 | 10 |
A list of co-occurring predicted domains within the L. japonicus gene space:
| Predicted domain | Source | Observations | Saturation (%) |
|---|---|---|---|
| SSF88798 | SUPERFAMILY | 1 | 11.11 |