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TREX

Transcript Explorer
for L. japonicus reference genomes

The Transcript Explorer tool can be used to search for candidate Lotus genes using user-defined keywords, or to comb a specific genomic interval—a combination of chromosome and position range—for genes/transcripts of interest.

Repeat Search

  • IPR005576
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We have found 13 results. Now displaying 1 of 1 with 50 rows per page. This search has taken 5.560s to perform.

Transcript Name Description Chr Start End Strand Domain predictions GO predictions
Lj0g3v0128599.1
n.a. PREDICTED: DNA-directed RNA polymerase II subunit RPB7-like isoform X2 [Cicer arietinum] gi|502116157|ref|XP_004495325.1| chr0 58101085 58101922 +
4 domain predictions
1 GO term
Lj2g3v0039360.1
n.a. DNA-directed RNA polymerase II subunit RPB7 [Glycine max] gi|351722267|ref|NP_001236982.1| chr2 860248 872589 +
4 domain predictions
1 GO term
Lj2g3v1984950.1
n.a. DNA-directed RNA polymerase II subunit RPB7 [Glycine max] gi|351722267|ref|NP_001236982.1| chr2 29227044 29231077 -
4 domain predictions
1 GO term
Lj4g3v1062200.1
n.a. PREDICTED: DNA-directed RNA polymerase III subunit rpc8-like [Glycine max] gi|356572779|ref|XP_003554543.1| chr4 15039577 15045008 -
4 domain predictions
1 GO term
LotjaGi2g1v0020200.1
n.a. DNA-directed RNA polymerase II subunit; TAIR: AT5G59180.1 DNA-directed RNA polymerase II; Swiss-Prot: sp|P46279|RPB7_SOYBN DNA-directed RNA polymerase II subunit RPB7; TrEMBL-Plants: tr|I3SGA6|I3SGA6_LOTJA Uncharacterized protein; Found in the gene: LotjaGi2g1v0020200 LjG1.1_chr2 7381590 7390280 -
2 domain predictions
1 GO term
LotjaGi2g1v0020200.2
n.a. DNA-directed RNA polymerase II subunit; TAIR: AT5G59180.1 DNA-directed RNA polymerase II; Swiss-Prot: sp|P46279|RPB7_SOYBN DNA-directed RNA polymerase II subunit RPB7; TrEMBL-Plants: tr|I3SGA6|I3SGA6_LOTJA Uncharacterized protein; Found in the gene: LotjaGi2g1v0020200 LjG1.1_chr2 7382196 7386040 -
2 domain predictions
1 GO term
LotjaGi2g1v0414900.1
n.a. DNA-directed RNA polymerase II subunit; TAIR: AT5G59180.1 DNA-directed RNA polymerase II; Swiss-Prot: sp|P46279|RPB7_SOYBN DNA-directed RNA polymerase II subunit RPB7; TrEMBL-Plants: tr|A0A0G2T569|A0A0G2T569_9ROSI DNA-directed RNA polymerase II non-catalytic subunit; Found in the gene: LotjaGi2g1v0414900 LjG1.1_chr2 91266058 91270148 -
2 domain predictions
1 GO term
LotjaGi2g1v0414900.2
n.a. DNA-directed RNA polymerase II subunit; TAIR: AT5G59180.1 DNA-directed RNA polymerase II; Swiss-Prot: sp|P46279|RPB7_SOYBN DNA-directed RNA polymerase II subunit RPB7; TrEMBL-Plants: tr|I1K337|I1K337_SOYBN Uncharacterized protein; Found in the gene: LotjaGi2g1v0414900 LjG1.1_chr2 91266779 91268964 -
2 domain predictions
1 GO term
LotjaGi2g1v0414900.3
n.a. DNA-directed RNA polymerase II subunit; TAIR: AT5G59180.1 DNA-directed RNA polymerase II; Swiss-Prot: sp|P46279|RPB7_SOYBN DNA-directed RNA polymerase II subunit RPB7; TrEMBL-Plants: tr|I1K337|I1K337_SOYBN Uncharacterized protein; Found in the gene: LotjaGi2g1v0414900 LjG1.1_chr2 91266808 91268964 -
2 domain predictions
1 GO term
LotjaGi4g1v0139300.1
n.a. DNA-directed RNA polymerase II subunit; TAIR: AT1G06790.1 RNA polymerase Rpb7 N-terminal domain-containing protein; Swiss-Prot: sp|Q9Y535|RPC8_HUMAN DNA-directed RNA polymerase III subunit RPC8; TrEMBL-Plants: tr|A0A151SJW3|A0A151SJW3_CAJCA DNA-directed RNA polymerase III subunit rpc8; Found in the gene: LotjaGi4g1v0139300 LjG1.1_chr4 20750890 20757772 -
2 domain predictions
1 GO term
LotjaGi4g1v0139300.2
n.a. DNA-directed RNA polymerase II subunit; TAIR: AT1G06790.1 RNA polymerase Rpb7 N-terminal domain-containing protein; Swiss-Prot: sp|Q9Y535|RPC8_HUMAN DNA-directed RNA polymerase III subunit RPC8; TrEMBL-Plants: tr|A0A151SJW3|A0A151SJW3_CAJCA DNA-directed RNA polymerase III subunit rpc8; Found in the gene: LotjaGi4g1v0139300 LjG1.1_chr4 20752127 20757612 -
2 domain predictions
1 GO term
LotjaGi5g1v0185800.1
n.a. DNA-directed RNA polymerase II subunit; TAIR: AT4G14660.1 RNA polymerase Rpb7-like, N-terminal domain-containing protein; Swiss-Prot: sp|A6QRA1|NRPE7_ARATH DNA-directed RNA polymerase V subunit 7; TrEMBL-Plants: tr|I3SJ91|I3SJ91_LOTJA Uncharacterized protein; Found in the gene: LotjaGi5g1v0185800 LjG1.1_chr5 47260211 47262590 -
2 domain predictions
1 GO term
LotjaGi5g1v0185800.2
n.a. DNA-directed RNA polymerase II subunit; TAIR: AT4G14660.1 RNA polymerase Rpb7-like, N-terminal domain-containing protein; Swiss-Prot: sp|A6QRA1|NRPE7_ARATH DNA-directed RNA polymerase V subunit 7; TrEMBL-Plants: tr|I3SJ91|I3SJ91_LOTJA Uncharacterized protein; Found in the gene: LotjaGi5g1v0185800 LjG1.1_chr5 47260649 47261245 -
2 domain predictions
1 GO term