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| Field | Value |
|---|---|
| Gene ID | LotjaGi4g1v0140900 |
| Transcript ID | LotjaGi4g1v0140900.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Auxin efflux carrier family protein; TAIR: AT1G76520.1 Auxin efflux carrier family protein; Swiss-Prot: sp|Q9C9K5|PILS3_ARATH Protein PIN-LIKES 3; TrEMBL-Plants: tr|G7L7X2|G7L7X2_MEDTR Auxin efflux carrier family protein; Found in the gene: LotjaGi4g1v0140900 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:21372295..21377947) extracted from Lotus japonicus Gifu genome v1.2.
CTTTCTTTTGTTAGACACATTAAAGAAATCCTTAATTAAACCAAATTCTCTGTATCCTTCCTGGTTTTTTCTTTTCTACG TGAATCTCTTTCCTTATGATGCTTCTTCCCTTATGCAGTTATGCTGCTGCATCTTAATGTTCATCCATTGCCATTTCCCT TTCTTCACATTGATTTACTCTTACCTTCTATAACGACAAGAAATCTGAGATATACAAAGAATCTCTGAATCATATCTAGC GCGTACAATTCAAGCTACACTCTGCAACAAACCACGCGCGGTGCGGGGTACGTCATAATTCTAACCTTGTCTTGTTTTGA TGCATAAAAACATGTCTTCAATTCAACCTATGTAACAATCGTCATACTCTTCTGGTTAGCTTTTACTCCTTCTCACGTCA CTGACTTGTCTCCTTGAACAAAAGTCTAACACGAATACTAGTCAGAAAGAAATATGAAAACGGAAAAATAACACGTCGTC TTGATGCAGTTTTTGTTCATAGTTTCTGACCGGTATCAAGACGGGCGCTTTGCATTTTGGTTTTCTGTTTAGCTTTAATT AACCATGAAAGCCTGGTACCGGTTTCAATTGGTTATAGACTGGTCCTAATAATAATATGTTGATTTACTGCATACCAATG TTGGCTAAAGTGTTTTCTTAGAAGTGGTAGCTTTCATGGCTGCATGTTGTGGATATAGTTATTAATTAATGTCATGGTGT CCCAATTCTTTTGTTTAATTTATATGATTTTTGGGTAAGCATGTGCTATTTCATGATGAATGCATTCTTTGCACAACTAC CAGTCTCTACTTCACTTTTGCCCTTCTTCACTTTCAATGAAAGGGACCCTGTTCTTTGTTGTGAAGTCACACAGCATCTG TTAATTAAGGTCTTCTTAGAGTTATAGAGTAGTAGGAAAATATAATTGTTCCGTTTTTTCAATTTCTTTGGAGTTTTATT TTGTTTCAGATTTATATGTTTGCTTACAGCTCCAATTTTGTTGGAGTGTAGGATTAGCTAGCATATATACATTGTTTTAA AGATTACTGGAAATGGGGTTTCTAGAACTCTTGTCTGTTGCCTCTTACCCGGTGATGAAAGTGTTACTCATTACCGCGAT TGGTGTGTTTCTTGCATTGGATAACATAGATGTTCTGGGAGCAGATGCAAGGAAGAAAGTGAACAATGTAAGTCCTGAAA TGTTTGAAAAAAGTTCACCTTTTAATTTTTTCTCCCCTGATTTCTGTTTGTTGTTTGCTGACAACAGTGCTGTTTCTGTG ACAGCTTGTGTTTTATGTGTTTAATCCATCCCTGGTGGGTAGCAATTTGGCCAAAACCTTAACCTCTGAGAATGTTCTTT CATTGTGAGTATTAATTTGTATTTTGTAATCATTTATCTTAGGCCCATCCAAGGTTTTAAATTGCGATCCACAGCCGATA TTGCAGCCGTAATGCCATGGCTTATAAGTTCACTACAATCTCATGGCGACTGCAATTGGGGCTGCATTTATCCATAATTT TCTGCATATCCAGGATTGCCATTTAACTGCGATTGTAATCGCAATTTAAAATCTTGGTAGCATCCAATTGGTTTGTTTGT TTTAATTCACAGATTTTGATACATTTTTTGTTGTGATTTAGGTGGTTCATGCCTGTCAATGTTATTGTCACATTCATATT AGGCTCAGCCTTAGCATGGATTTTGATTAAAATCACAAGGCCTCCCAAGCACTTGGAAGGTTTAATTTTGGGTTGCTGTT CTGCAGGTACACTCTTCCTCTGCACAAAAAAGCAATTAATGTGTGAAGCCAGAGACATAATGTGTTTGATGATTTCACTA GGGTCTGAGATACATGCTGATAAGTGAAACATTGACAATAAATTCATTCTTTTATAGTGTGTTTGCGAAATCTAACTGTG TGTTTCAATTCAAGTTTTTGCATCATGACTCCCTGCCTAATGCATCTTGTTGGTTGAGCTCAACTTTTGGATTTATGTGA TAAACAGGAAATTTAGGGAACTTGCCTATAATCATCATTCCAGCTATATGTAAAGACAAAGACAGTCCTTTTGGAGAACC TGATATCTGCTATCAATATGGGATGGCTTACGTCTCACTTTCCATGGCGGTATGCAACTTTGTTATTCGTCCGATGTTAT AATTTTGAAGTTGCAAGTATTGATACAGTCATGTTTGGATAGACGGTGGAAAATAGATCACGGTAAAGTCAAAATCACTT TGCACTAACACAAAAGCTGAGAGAAGTTGCTTCTGTCCACCGTGATTTTGTTTCACTGTTTATCGGAACATGCAAATAGT GTGCACTTATCCAAGAAAGGAAAAAAGTTATTTGACTCTAAATGATTCACTTTAGGTTGGTGCGGTTCTAATATGGACAT ATGTTTACTACATAATGAGGGTTTCCTCAAAGACACTTCACAAAGAAAGTGGTACAATATCACAATCACAGCCAGACAAT ATTTCAGAAACACCTACTCCTGCAAAAGACACACTGGATGATGCATATACTCAACTGCTTCCTACCACAGAATCACAGGA AAAAGTGAAGGTTACTACAAACTTTTCTTCTAAAATCTATATTATGTACTGATGATAATTTCAGAACAGATTTCTTTATA GCCATTTTATAACTAGCAGTTGCATTTTAACAATTCAATAACAAATGTCCAACTTATATAAAATCCTGACTTAATCAAAC TAATGCAATTCGAATTCCCAATACTAGGTTAGTTTTCTAAAGAATGTAGAATACTTCATATATTAACATCAAGCATCCTT ATGTACTATCTCAATTTATTTGCTGTATGCAAGAGGATTTACTTAACTTATGGTCTATCCATTCTGCACTTTAACTAGTA ACTCATATAATCATGTTTCTATATTTTCATTTGTCCTGTGACAAGAAATGTAATTACAATAACATCTTGGTTTTTCGATT TTCAAGGTTTCAATCTCATACAAAATTAAGAGCCAGCTGTGGAAGATTTCAAGCAATATCAATTTTGGACACGTTTTCGC GCCATCAACCATCGGAGCGGTGATAGATTGTTCATTTCCTTGAAAATAACTCACTATTTGTTTTCTGTTTTCTCATAATG TATTTTATTTGTGTTTTTTCATAGATTACTGGCTTTAGCATTGGTGTAATCCCCCCAATACGTAATTTCCTGGTTGGCAA CAATGCTCCACTTCGTGTGGTTGAAGACTCTGCATCCATGTTAGGGTATGCATCCTAAATCTCAGTCTTCAACAAGTTAC AAAGCATTGAAAGTCAAAAAATGTGTGATGGAACACTTATTTTCATATCAAGATTTTTTGTTCCCTAATAGTGTCTTATT TCCTATTGCAACTAATGAAATTATATCAAGTTAATTAAAATTGATGGATATGACATTTAAAGCCTTACATGGGTCATTTC TAATTGACGCGACAACAATTTCATTGGTGAGACAGGGAATGAGACATCATTTGGGTACAGAAGATCCCCATCACTTATTT TCACTTCAACATTGCTTGTTATTGTTTGATATCATAGTTAGCCGCTTAGTATTATCTAACAAATTTGAAATCTTAAAACT TTGTAGTGATGCAGCCATTCCAACAGTCACACTTATATTGGGTGCAAATCTCCTTGGAGGTGAACTTTACTAATGCTAAT TGTTTGGCTTCGCATAAGCACTAGTTCTTTTTTTTCTTCTGTTTTCTTTATTAAATAGAATTATGGGTGAATGGACCAGG TTTGAAGGGAACAAGTACTCCACTTTGGACCATTGTTGGAATTATATTAGTCAGATATATTTTCCTGCCACTATTGGGTG TTGTAATTGTAAAAGGGGCAGTAAAATTTGGCTTGGTGCCATCAGATCCCTTATATCAGTTTGTGCTTCTACTTCAATAT GCATTGCCTCCAGCTATGAATATAGGTAACTCTACTTAATAAACTCATTGAATGGAAATGTTTCATAAGCTTGCAACTTG TTATAGCACAATACAAATTTGCCACCACATGACAATAGTTATGTTTATAATACTGGTAACAAAGGTAGATTAACATGCTG ATGCTATTACTATGTATATAATATGATTTTAACTTCCTTGTTGGTTCAACTGTTTTTACATTAGCTATTGGTACATAACA AACCTCTTGTTTCCACTTATTTTGGCAGGAACTATGGCTCAATTGTTTGGAACTGGCCAAAGTGAATTCTCGGTTATCAT GCTATGGTCATATGCTCTGGCGTCAATTGCAGTAACCCTTTGGTCCACCTATTTCATGTGGCTAGTTGCTTGATTACTTC TACTCATTGACATGGTTATAATTTGATTAATTGATTGTTATTTGATATTGGAGTAGAAAAATCATGCAATACTCATAATA CAAAAGTAATATTCTTTATCTCAAAGTCTGCCAAAGGCTAGAAGAAAAGGACATTCAGTTGAGGTCTCCATTTCAGAGAA TCCATCTGGTTCGGCCTTAACATCCAGCACATTAATATCATAAACAATATAGTTGTCTGTCCAGGTAACCAAATACTTCA TGACTCCACCACCTCCTGATTTCTAATTTTAAAGTCTTCAAATTTTCTTTTAAAACAAATGTTGCTTGCCTACATAGTTA GCATTCAACCAGATTCCTCAACCAATGGTGTGAGGTTTAGGTGTGATATAGACTAAGGTCCCTCACATTATGAAGAGATA TGACTTATGAAGTCCAATAAGTGATGCAATAAGAAAATTGATAATAGGTGTGATATATGATAAGTGAGATAAATGATACG TGCGATAAGTAATAGATATTATATGATAAGTGATATGTGATATATGATAATGATGATACCATGGGTGAAAAGTGATAAGC AATAAAATTTAGAAAAAAAATTCTTGGACCAATACCTATCCAATACCAAATGGATCACCAGGATCATTCCACTGTAATTT GAAGGAAACATCAACAACAACCTCAATTGTTTCAAAATTATCCTTCGAGTCAAATTTGTCAAAAGTAACAACCCAAATAT AAGCAGCACCATGTTCAATTATGGCTTAACAACTGTCATGTTACTTTTCTATTCTACCTAATATAGAATATAGTAGCATT TTACCATATTTGAGCTACTGATAAATTGTCTAACTATACAAGTAATATGTCATCCATTTCTCGAAGCGAGACCAGGCGAG CTGAACGGCAGCATCATCTTCATCAGGCATTCCCATGGCACTGTTCATAAATGCGTGTCTCTTGCCATGAAACATGTGTA TCTCATGTGGAGCTTCAGATTCCTTCAATTTCTCCTCCAATTTCTTCACAGCCGTAACATCCGAAAAGCCAACAAAATCA TCCAACTCCCCAAAGTGAGCCCGAACAGGTTTTATGCCAAAGCCAAGCACTTCTGCACTTGCAAACAGGTCGACCTACTT AAACAGAAAATATTAGTAAAAACTTAATCATTATTGTTGTTGTTATTTTAGATTATTATATTAAATTTATATACTTATTG ACTCACATATTGACACAATAATAAGTCTATTTAAAAAGGACTGATGATCTATTTAAATACCTTTAAAATTGTAAATAAAT TTTCAGGTCTTATATTAAACTCAACACAACTCTCCATATTTTTACCCTACGTG
CDS sequence (LotjaGi4g1v0140900.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGGGTTTCTAGAACTCTTGTCTGTTGCCTCTTACCCGGTGATGAAAGTGTTACTCATTACCGCGATTGGTGTGTTTCT TGCATTGGATAACATAGATGTTCTGGGAGCAGATGCAAGGAAGAAAGTGAACAATCTTGTGTTTTATGTGTTTAATCCAT CCCTGGTGGGTAGCAATTTGGCCAAAACCTTAACCTCTGAGAATGTTCTTTCATTGTGGTTCATGCCTGTCAATGTTATT GTCACATTCATATTAGGCTCAGCCTTAGCATGGATTTTGATTAAAATCACAAGGCCTCCCAAGCACTTGGAAGGTTTAAT TTTGGGTTGCTGTTCTGCAGGAAATTTAGGGAACTTGCCTATAATCATCATTCCAGCTATATGTAAAGACAAAGACAGTC CTTTTGGAGAACCTGATATCTGCTATCAATATGGGATGGCTTACGTCTCACTTTCCATGGCGGTTGGTGCGGTTCTAATA TGGACATATGTTTACTACATAATGAGGGTTTCCTCAAAGACACTTCACAAAGAAAGTGGTACAATATCACAATCACAGCC AGACAATATTTCAGAAACACCTACTCCTGCAAAAGACACACTGGATGATGCATATACTCAACTGCTTCCTACCACAGAAT CACAGGAAAAAGTGAAGGTTTCAATCTCATACAAAATTAAGAGCCAGCTGTGGAAGATTTCAAGCAATATCAATTTTGGA CACGTTTTCGCGCCATCAACCATCGGAGCGATTACTGGCTTTAGCATTGGTGTAATCCCCCCAATACGTAATTTCCTGGT TGGCAACAATGCTCCACTTCGTGTGGTTGAAGACTCTGCATCCATGTTAGGTGATGCAGCCATTCCAACAGTCACACTTA TATTGGGTGCAAATCTCCTTGGAGGTTTGAAGGGAACAAGTACTCCACTTTGGACCATTGTTGGAATTATATTAGTCAGA TATATTTTCCTGCCACTATTGGGTGTTGTAATTGTAAAAGGGGCAGTAAAATTTGGCTTGGTGCCATCAGATCCCTTATA TCAGTTTGTGCTTCTACTTCAATATGCATTGCCTCCAGCTATGAATATAGGAACTATGGCTCAATTGTTTGGAACTGGCC AAAGTGAATTCTCGGTTATCATGCTATGGTCATATGCTCTGGCGTCAATTGCAGTAACCCTTTGGTCCACCTATTTCATG TGGCTAGTTGCTTGA
Protein sequence (LotjaGi4g1v0140900.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MGFLELLSVASYPVMKVLLITAIGVFLALDNIDVLGADARKKVNNLVFYVFNPSLVGSNLAKTLTSENVLSLWFMPVNVI VTFILGSALAWILIKITRPPKHLEGLILGCCSAGNLGNLPIIIIPAICKDKDSPFGEPDICYQYGMAYVSLSMAVGAVLI WTYVYYIMRVSSKTLHKESGTISQSQPDNISETPTPAKDTLDDAYTQLLPTTESQEKVKVSISYKIKSQLWKISSNINFG HVFAPSTIGAITGFSIGVIPPIRNFLVGNNAPLRVVEDSASMLGDAAIPTVTLILGANLLGGLKGTSTPLWTIVGIILVR YIFLPLLGVVIVKGAVKFGLVPSDPLYQFVLLLQYALPPAMNIGTMAQLFGTGQSEFSVIMLWSYALASIAVTLWSTYFM WLVA
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 404 | 404 | 1.0E-199 | – | |
| PANTHER | 1 | 404 | 404 | 1.0E-199 | – | |
| Phobius | 1 | 11 | 11 | - | – | |
| TMHMM | 7 | 29 | 23 | - | – | |
| Pfam | 11 | 395 | 385 | 5.6E-67 | ||
| Phobius | 12 | 31 | 20 | - | – | |
| Phobius | 32 | 42 | 11 | - | – | |
| Phobius | 43 | 61 | 19 | - | – | |
| Phobius | 62 | 72 | 11 | - | – | |
| TMHMM | 72 | 94 | 23 | - | – | |
| Phobius | 73 | 94 | 22 | - | – | |
| Phobius | 95 | 105 | 11 | - | – | |
| TMHMM | 106 | 128 | 23 | - | – | |
| Phobius | 106 | 127 | 22 | - | – | |
| Phobius | 128 | 146 | 19 | - | – | |
| TMHMM | 143 | 165 | 23 | - | – | |
| Phobius | 147 | 168 | 22 | - | – | |
| Phobius | 169 | 241 | 73 | - | – | |
| MobiDBLite | 179 | 196 | 18 | - | – | |
| MobiDBLite | 179 | 199 | 21 | - | – | |
| TMHMM | 237 | 259 | 23 | - | – | |
| Phobius | 242 | 262 | 21 | - | – | |
| Phobius | 263 | 281 | 19 | - | – | |
| TMHMM | 281 | 303 | 23 | - | – | |
| Phobius | 282 | 303 | 22 | - | – | |
| Phobius | 304 | 309 | 6 | - | – | |
| TMHMM | 310 | 332 | 23 | - | – | |
| Phobius | 310 | 332 | 23 | - | – | |
| Phobius | 333 | 351 | 19 | - | – | |
| Phobius | 352 | 370 | 19 | - | – | |
| Phobius | 371 | 381 | 11 | - | – | |
| TMHMM | 380 | 402 | 23 | - | – | |
| Phobius | 382 | 403 | 22 | - | – | |
| Phobius | 404 | 404 | 1 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Cellular component | Integral component of membrane | The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. | ||
| Biological process | Transmembrane transport | The process in which a solute is transported across a lipid bilayer, from one side of a membrane to the other. |
Expression pattern of LotjaGi4g1v0140900.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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