Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message
| Field | Value |
|---|---|
| Gene ID | LotjaGi4g1v0142800 |
| Transcript ID | LotjaGi4g1v0142800.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Rop guanine nucleotide exchange factor, putative; TAIR: AT1G31650.1 RHO guanyl-nucleotide exchange factor 14; Swiss-Prot: sp|Q56WM6|ROGFE_ARATH Rop guanine nucleotide exchange factor 14; TrEMBL-Plants: tr|K7MGA4|K7MGA4_SOYBN Uncharacterized protein; Found in the gene: LotjaGi4g1v0142800 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:22417718..22424989) extracted from Lotus japonicus Gifu genome v1.2.
GACTTCTTCGAGAACAGAGTACGGCGCAATCACATCGCGCCCGCATCGTAACCGTTCGCGTAATCACTCTCAGGAGGTCC CATTTCATCCAACGGCCCAAACACCGCAACGACGCGTTCAACAACGCTCTCTCTCTATTTCTTCTTCTTCGTCATCAAAA CGAAACGCATTAATGCTCTCTCTTTCACACTCTCTCTTAGCCATTACCGTTTCAATTCTTGTTCTCCCCACCTCATAAAT GCACAGCCATATCACTATTAATGCATTCTTCACTTCTATAACACTGACGCTAAATTTAACACCTCAACAATGCCAAGAAA CCCTGTTCGAAACTCAAACATTTCAACCACCTCAGGTATTTTCTTCTTCCTCTGCTTCATTTTTACTACTATTACTTTCT GCTACTCTGCAATCTGTTTCTGCAATTTGTTTTTATCGATTCACTGTGAAACCTTGCTATGCTAAACGCTGCAATCTGCT TCAACTAAACGCTGCGTTTCCATTTCGTAGATTTGGAGTAGTTGTTGTTGTTGTATTGAATTTTTCCTTTTCTATTTGTG AAATCGAACTTGTTCTGTTTGATTGGATCTTCGTTGGAAATGTTTGGGGAAAAACCTTCATGCATTAGTAATTATTTATA TTTTAGAAAAATTAGGAAGAAGAAAGGTGAGTTTGTATGACACATGCTGCATCTGACGAATTTTTTGGTTCTCACACTTT TTTTGACCTTACCTTTCAAAAAGTTATGCCATATGTAAAGCCCTTTTTGCTCGAACAGTGTTCTATTTTTGCTTTTTTCC TTCCCCTCTTTTGCCACTTGAGTAATGAATAATTAATTATTTAATTCCCAAACAAATGTTGTAGGAATGGGCTGGCCTTA TATTTATATTGTTTAAAAAAATTATTCATTAAAAGTTGTGCAAATAAATCAAAATGATATATTTTTTAAATTAACTGAAA GTATTTATAATTTATATTTTTTTTATACATCAGAAAACTGTTTATAATTTATATTAAAAGGCTCTAAGTTAAGATGTTTT GACTCAGTTCAATAGTATATATTCATTGTCTAGTTGTCTAAAGCTGGTTTGTTATTGTTTATTTTGTTAAATAATCACTT ATTATCTTTCCAATGTACCAAAAGAATAATCACTTATTTCAAAAAAAACTAACCTCCTATGTATATTTTTATGTGTTTGT GTGTGTTTTTGGAGAAAATTATTTGTAAAGAAAGCATAGAACTGAACTGATTAATTATTTTCTTAAGTTATTTTGAGTAG TTTTAGAAATGATCTATTATTTTTAGTGTACTTTTAAATGAAAAGCAAATTTTTTTATAAACAAATGAATTTCCAATTTT TTTATAAATCTATTAAAATACAATTAAATGGGCCCATTAATTAACTTCAAAATCAAGCGATAATAAACGGGCCCATGAAT TACGTGTAATACTTTTTGAAGCCTTAAGGACCTTATTTTGCTTTGTTTTGGTATGTGGATGTGAATGACTAAATTGTTTC TAAGATAATAACTTTGGCATATTGTTGGTGATGGACACAGTGCTATTTATTGAAACAACAGTGACATTTCAGTGAAGCCA GAATTCAAACTACAGCAGTAGATAGAGGGAAGAGAGAAAAGATGCTGCTGATTAGAAAAAGACTAACTTGCTGCGCCAGG GAAACCAAAATTAGCATTGATTATGACGAGCCAGATAGTAAGTTCTTACTCCCAATTTTCATCCTTGTATGATCATTTAT TTATTTAAGGTGGATCATTTGATCAGAGTTACCAGAAAATAATTTGTTAATTATATGAAAGGATTATTTATATAGTTCAA AATATGTCATCATAATCAATGAACTTTTATGCATAACACTTTTACACTAGAGTTCTCAGTTCTCACTAGTGTTATATTGA ACATGAATCTTGCATTTTATTATGGTGAATTCTACCGTACCTTCATTGTATGGTACATAACTGATGCGATTTGACGTGTA TTAATAGGAAACCGACATCTGACAGGGTATTTAAATTTTTTATTCATTTTAAAACATATATGGTAAAAAGAAGAAACACC CACTTAAATGGTATTGGTCCACCTCACGTCTTGTATTATACCCCAACTAAGTGTTGAGGTATCCTAGCAACCACCTTTAA TTATTAGTCTTGTTTTCTCTTCCTTTTAAATAATACTATATTTAGTAGTTAATTTAACTTTTGGATTATCAATATTAAAA TCATTACAATTTAATTTTAACACACTACATTAGATTAAATAGAATAACAGTTGGTTTTCATTTTATAAAATAGAGATCTT TCAAATATACCATTAGTCAAATTTAGATCACTGAGGGATCTGACATTTGTGTTTATTTTATTCTTTGGTCTGTATTAATT CTTTGTTATACAGTGACTAATCAGCACTAGCAGCATGCATTCTTAAAGAATCAGCCAATCAGGCTCCAATTTATATATTT TTTTTTAATTTAAGGAGAAGAAAACGGTCATGCCGGTGACATACCATTAGAAAAAAATCAACAATGTCAGTTGATCAATT AAGTTTACAACTTTCAAGGTTTAGTTGATTTATTTTCTCAATTAGAATTCTTGTTCAGTAAAATGGTTATCCTTCAAAAG CTAAATTTAAGTGATTTTAGACAACGGAATGGTAGAGGTAGAATTTTCTTGAATAATTAATTTTCTCTAATAATTATTAG AGCGTTATAATATTTTTTTCGTTTGTTGTTTTTATAATTTTGTAAAAAATGCTAAATATATATATATATATATATATATA TATATATATATCCTTTGCAATGAAAATGAAGATAAATAAAATATGGAATATTTTCCTTCCTATTTGTATTTCAAACATTT GTTGTTTTCTATTTGATGATCTATCGTACTCATTGTCCCCCACCAGAAAACTTCCAATTTATATTTTTGTTATTACAAGG TCCCGAACTATAATATTTTTGACATGTTAAATCTTTCATCGTTATCTTATCACACACAAGCAAGGTGGCTACACTGTTAA AAAAGGAAAAAAATTAAACTAAGTTTGCTGATATAACTTGCATGTGACCATGTGTGCTGCATTTATGATGTGGACAAATT TGACCGATTGTTATGCCCTTTTCTCTGGTGTGAACATCTGACATATCTTTATGAAAGCATTTCGTAGGACAACGGTACAG TAGATTCTTTTGTCCAAACAATTCTCCGGTTTATTGGCAATAAATGAAAGGGAATACATATGAATTAACAATGTGATAGA ATCACTGTAATTACTTAGCTTGTTTTTTGTGATTACGTGAAAAAAATGAGTTTTCCCTTAAGCAACATCTGTTAGAGTAA TGCCATTCAAGTTTCTTTGAAGCTTTCTAGTCCCGCATTACTCACTTCAACATATTCTCTTTTAATTTTCCAGTCAAGCC CTAATTACATATTTTAATTTGTCTTTACCCTAAACATTGTCCACATTATATCTGATTGCTTGATTACTGGTATAATTATT AATTGATTCGTTTTCCAGAAATTACCTACCTGCCCATGATATTCATATTTAACTAATTGAACAATTAGTTTTCCTCTTGT AACAAAAAAAACTAATTGAACAATTATCATAATTACCGATTGAAATCATGTACTAAAGTCATATTATCTCCACCAATGGG TGATAGGTTCAATTGGTATTGATTCCGTTTAAGAAAGCCTCCGGTTTGAGTCTTGGGTATGGATAAAACCTCCCAGGAGA GCTAGTCACACTAGGATGTGAATGATCCTAACTCGAACATATGATTGCATCTTGCAGAGGATACATGTGTTAGACAAAAA AAAGAAGTCATATTAGCTCCACTATAAACTTAGTTCCAGTTTTGCTTTTATTTCTTCTTATACTACTTTAGTTTCATTAC ATTACTTTATTTGTCCAACATCAATGAGAGAGTATGTTCTTCCATTTTTGACATTTACAGCTAAATGTTCATCTTGTTCT TGAGGTTTTGGCAATATTGCTAAATCTAACCATGGCAGGTTCTAGAAATCACATGTTTATGAATTTATAATGGAATATTT CAGGGATTATGACATATAATGGCCTTGAGGGTTGCATTCTTGATAATCAATCTTATGAAGATGAAAGCAGAACTAGTAGA GGAGATGGATGTATAACTGATTCATTCAATGACGATGACTCCAGTTGTTCATCCAGTAAAGATGCTTTTGATTCATTCTC TTCGAAATGTTTGCCAATGAAAAGGGATGAACATGGATTGGAAGATTGGGAACTCTCAGAAAGCCCTCAACATTTTTATA TGAAAGAGAAGCCTGCATCTACCGTCCAATATTCAGATGTAGAAGCCATGAAAGAAAAGTTTGCAAAGCTGTTGCTAGGT GATGATGTTACAGGAGGAACTAAGGGCTCTAACACAGCTTTAGCACTGTCCAATGCCATCACTAACCTAGCAGGTTGGCT CTAAATGCATTTTCTACCATGTTTTCATTCTTTCTGGTTATCCATTGATAAGTACATTTAGTTTGAACTTTATAAACTTA TCACTGAAGAAAAAGAAATAGGTGCCTTGTCAAAGGTTTGATGTGGAAAATGGCATATAGAGAAGATCTTTTAAGTTTAG GACCGCAGAATTCCACCTTCAAGCTGTTTTATGTTCTTCCTCTGTTTTTTTTTAAGCGAATCTAAAAGCAAGATGAAAAT ATGCAGTGACGGTTTTCGGTGAGTTGTGGAAATTGGAACCTCTATCTGAAGAAAGGAAGAACAAATGGCGAAGAGAAATG GACTGGTTTCTGTCTCCTACCAACTATATGGTTGAACTAGTTCCTGCTAAGCAAAATGGTGCTAATGGAGGGATCTTTGA GGTATCTTTTGTTTGAACTGGAAAGAGAAGAGTATAGTATTTTATAAATATCGCAGTATTTTATAAATATCGCATTGCCT TAAATTAAGTTAATACTCATCTTTTGACAGATAATGACTCCAAAAGCCCGGGCAGACATCGGCATGAATCTTCCAGCACT TCACAAGTTGGACTCTATGCTTATTGTGGGTCATCTCTTCATTCTCATCAGAGATCTCGAAACACTGTTAGCAGTTTGGC TCATCTTTCTGATGTTCTGTTTGACAGGAGGCTCTTGACTCAATGGTGCATACCGAGTTTTGCTATGCCAAGGGAGCAAG CCAGGCAGAAGGGAGGAACACAAGTGGAAAACAAAGCAAAAGATGGTGGCTTCCATCACCCCAAGTACCAGCAACTGGGC TTTCTGACACTGAAAGAAAGAGGCTACTTCATCAGGGAAGGATAGTACATCAAGTATTCAAGGCTGCCAAAGCTATCAAT GACAATGTGTTGCTTGAAATGCCCGTGCCATCAATAATTAAAGATGCACTTCTGAAGGTAATTGTTAGAAATATGATACA AAACCATTCATGTGTCCTTTACCTAACAATGTAAGCTTTTGAGATAATTGGTTCATGCCATGGTATCAGACCTTCCTATG ACCAATTACCCAAATTATTTTAATAAAAAATTTGAATTTCACCGCAAAGACGGGGGAGGGGAGTGGCAGTGTGCATTGTC AATATTTCAAGCCCAATGGGCTTTTACGTGAGGGGCGTATTAGAAATATAAAAACTTTCATCTATCCTTTATCCAACAGT TTAAGCTTTTGGTATAATTGGTTCATAACAGTAATAAACTTTGAGGGTTGGGTAACTTCAATCTTTATTGAAATTATATT TTTAGCCTCAGGCAAACTGCGCGCAGCAAGATAGCCAAAAAAAGGATAATCCATGTGAGGAGTAGAGTGGGGTTAAAGAT TTTAAACATGATGATGAATAAAATGGGGTTCTATTTTCGTCTATAAATGTTTAAAGTTGAATGCTATTAAAGGTGTAAAG TATGATCTTAAGAAATATGTTCTGTCCTTAATCTGAGCTTAGTTTCATTCACAACAAGACTACATTAAAATAACACTGGT CATGAGGATTTTTTTTCATTCTTGGATGTAGAAATAGAGAATATCAATGCAACCTAGAATATTTTTGTATGTTATTACAA CCTTCATCTTATCATTAAGTAAATCTGTTTCTGTGCTGTATAGTCTGGAAAGGCAACCCTTGGAGAGCAACTGCACAAGG TTTTGATGGCTGAATCTAATTCTGGAGAAGAAATTCTTGAATCTCTCAATTTGAAATCTGAACATAGTGCCCTAGAGACC ATTAATAGATTGGAAGCTGCTACATTTTCATGGAAAGAGAGAGTAAAGCAAGAACAAAATGGCAGATCCCCACTACGAAC CTCGTGGTCTTTCAAGAAAGACCCTGTGTCAGGTATGGATAAGATGGAAACATTGTTGGACCGTGCAGAAACACTTATAA AGCAGCTTAAAACCGAATACCCAAATCTTCCTCAAACATTTCTGGATGCTGCAAAAGTTCAATATGGCAAGGTGAGTTTT ACTTTATAGTTTATACTGCAAACATTTACAGGCAATGACAAATTAGAGGCAATGTTGATTTCTTTTTATTTATTTTTGTA GGATATTGGGTATTCCATTTTGGAAGCATATTCCAGAGTTCTTGGAAATTTAGCCTTCAGCATCCTATCAAGAATAGGAG ATATATTGCAGGAGGATGCTTTAAGCAATCCCAATTCCCCTATGAGTATGACTACAAGTTGCTCTCCAGTGATAAATCTT TTTGAGGTTACTAGGGTGGTTGGTTCACATATCAGGCACTCATTAATTGATAAGATGAACAAGACAGATGTGAAGAATTG TGATTCTGATTCAGAACCCTCATCTGTTGAGGCAAAACCTGACTCAGTAACCGCCACACCAAGCCGTGGTTGAGTGTAGT GCATTACTGGTAGAGAGGTTTGTAAATGTGCACCCCCTCAAAATTCCCCACAGTAGCTTTTGGTAGCTCACTCTTGTACA TGTAATTTATTGTTATTCCTTTATGCACTCTTCGAATAGAAGCAAACTAGCAAGTTTGCCTTCCCATAAATTTTGGATGG TTTTGTCTTCAAGACAAATTTGTAGCTTGTGGCTAACAATTCTGACCATTTGTGGTTGTAGATCCCAGCTTCTTTCTTGC TATGCTAATTCAGATCATATTTCTTAAAACAATTTAAGAGATTTAAAAAGGCATTTTTATGGCTTTAAGTTGTAAACAAT TTTTAAGACTTTTAAATATATAAATAAGTACGTTAAAAAAAATTAAGTTGACTTTTTAAAGGATACATTTTT
CDS sequence (LotjaGi4g1v0142800.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGCTGCTGATTAGAAAAAGACTAACTTGCTGCGCCAGGGAAACCAAAATTAGCATTGATTATGACGAGCCAGATAGGAT TATGACATATAATGGCCTTGAGGGTTGCATTCTTGATAATCAATCTTATGAAGATGAAAGCAGAACTAGTAGAGGAGATG GATGTATAACTGATTCATTCAATGACGATGACTCCAGTTGTTCATCCAGTAAAGATGCTTTTGATTCATTCTCTTCGAAA TGTTTGCCAATGAAAAGGGATGAACATGGATTGGAAGATTGGGAACTCTCAGAAAGCCCTCAACATTTTTATATGAAAGA GAAGCCTGCATCTACCGTCCAATATTCAGATGTAGAAGCCATGAAAGAAAAGTTTGCAAAGCTGTTGCTAGGTGATGATG TTACAGGAGGAACTAAGGGCTCTAACACAGCTTTAGCACTGTCCAATGCCATCACTAACCTAGCAGTGACGGTTTTCGGT GAGTTGTGGAAATTGGAACCTCTATCTGAAGAAAGGAAGAACAAATGGCGAAGAGAAATGGACTGGTTTCTGTCTCCTAC CAACTATATGGTTGAACTAGTTCCTGCTAAGCAAAATGGTGCTAATGGAGGGATCTTTGAGATAATGACTCCAAAAGCCC GGGCAGACATCGGCATGAATCTTCCAGCACTTCACAAGTTGGACTCTATGCTTATTGAGGCTCTTGACTCAATGGTGCAT ACCGAGTTTTGCTATGCCAAGGGAGCAAGCCAGGCAGAAGGGAGGAACACAAGTGGAAAACAAAGCAAAAGATGGTGGCT TCCATCACCCCAAGTACCAGCAACTGGGCTTTCTGACACTGAAAGAAAGAGGCTACTTCATCAGGGAAGGATAGTACATC AAGTATTCAAGGCTGCCAAAGCTATCAATGACAATGTGTTGCTTGAAATGCCCGTGCCATCAATAATTAAAGATGCACTT CTGAAGTCTGGAAAGGCAACCCTTGGAGAGCAACTGCACAAGGTTTTGATGGCTGAATCTAATTCTGGAGAAGAAATTCT TGAATCTCTCAATTTGAAATCTGAACATAGTGCCCTAGAGACCATTAATAGATTGGAAGCTGCTACATTTTCATGGAAAG AGAGAGTAAAGCAAGAACAAAATGGCAGATCCCCACTACGAACCTCGTGGTCTTTCAAGAAAGACCCTGTGTCAGGTATG GATAAGATGGAAACATTGTTGGACCGTGCAGAAACACTTATAAAGCAGCTTAAAACCGAATACCCAAATCTTCCTCAAAC ATTTCTGGATGCTGCAAAAGTTCAATATGGCAAGGATATTGGGTATTCCATTTTGGAAGCATATTCCAGAGTTCTTGGAA ATTTAGCCTTCAGCATCCTATCAAGAATAGGAGATATATTGCAGGAGGATGCTTTAAGCAATCCCAATTCCCCTATGAGT ATGACTACAAGTTGCTCTCCAGTGATAAATCTTTTTGAGGTTACTAGGGTGGTTGGTTCACATATCAGGCACTCATTAAT TGATAAGATGAACAAGACAGATGTGAAGAATTGTGATTCTGATTCAGAACCCTCATCTGTTGAGGCAAAACCTGACTCAG TAACCGCCACACCAAGCCGTGGTTGA
Protein sequence (LotjaGi4g1v0142800.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MLLIRKRLTCCARETKISIDYDEPDRIMTYNGLEGCILDNQSYEDESRTSRGDGCITDSFNDDDSSCSSSKDAFDSFSSK CLPMKRDEHGLEDWELSESPQHFYMKEKPASTVQYSDVEAMKEKFAKLLLGDDVTGGTKGSNTALALSNAITNLAVTVFG ELWKLEPLSEERKNKWRREMDWFLSPTNYMVELVPAKQNGANGGIFEIMTPKARADIGMNLPALHKLDSMLIEALDSMVH TEFCYAKGASQAEGRNTSGKQSKRWWLPSPQVPATGLSDTERKRLLHQGRIVHQVFKAAKAINDNVLLEMPVPSIIKDAL LKSGKATLGEQLHKVLMAESNSGEEILESLNLKSEHSALETINRLEAATFSWKERVKQEQNGRSPLRTSWSFKKDPVSGM DKMETLLDRAETLIKQLKTEYPNLPQTFLDAAKVQYGKDIGYSILEAYSRVLGNLAFSILSRIGDILQEDALSNPNSPMS MTTSCSPVINLFEVTRVVGSHIRHSLIDKMNKTDVKNCDSDSEPSSVEAKPDSVTATPSRG
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 4 | 540 | 537 | 1.1E-270 | – | |
| PANTHER | 4 | 540 | 537 | 1.1E-270 | ||
| ProSiteProfiles | 108 | 480 | 373 | 95.614 | ||
| Gene3D | 109 | 349 | 241 | 5.6E-92 | – | |
| Pfam | 116 | 474 | 359 | 7.7E-157 | ||
| Gene3D | 386 | 480 | 95 | 7.2E-15 | – | |
| Coils | 400 | 420 | 21 | - | – | |
| MobiDBLite | 514 | 541 | 28 | - | – | |
| MobiDBLite | 527 | 541 | 15 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Rho guanyl-nucleotide exchange factor activity | Stimulates the exchange of guanyl nucleotides associated with a GTPase of the Rho family. Under normal cellular physiological conditions, the concentration of GTP is higher than that of GDP, favoring the replacement of GDP by GTP in association with the GTPase. |
Expression pattern of LotjaGi4g1v0142800.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
Loading expression data from ljgea-geneid. Please wait…