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| Field | Value |
|---|---|
| Gene ID | LotjaGi4g1v0151400 |
| Transcript ID | LotjaGi4g1v0151400.2 |
| Related isoforms 2 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Pentatricopeptide repeat-containing protein, putative; TAIR: AT3G16890.1 pentatricopeptide (PPR) domain protein 40; Swiss-Prot: sp|Q9LSQ2|PP239_ARATH Putative pentatricopeptide repeat-containing protein At3g16890, mitochondrial; TrEMBL-Plants: tr|A0A0R0IT60|A0A0R0IT60_SOYBN Uncharacterized protein; Found in the gene: LotjaGi4g1v0151400 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:24990719..24996097) extracted from Lotus japonicus Gifu genome v1.2.
CCAGCCATTGGTACTTATCTTGCACTTATTGAAGCATTGTACAAGGATGAACGGAGGGAGGAAGGGGATCGAATTTCCAA CCAAATGTTTAGTGATGGACTAATATCAAATATATTTTCATATAACATGATAATTAGTTGCTTCTGCAGAGCCAAACTGG TGGATAAAGCATCTGATGTTTTCAAAGACATGCAGCTTAGAGGATTCACTCCCAACCTTGTTACTTTCAATACCCTTATT GGTGGACATTGCAAGGATGGAACAATAATTAAGGCACGGGAGCTGCTGGTGATGCTTTTAGAGAATGGCCTTAAACCTGA TATCTTCACTTTTAGTTCTATCATTGATGGTCTCTGTCGAAGAAAGATGACTGAGGAAGCTTTTGAATGCTTTACTGAGA TGATTGAATGGGGGGTCAATCCAAATGCTATTATTTACAATATCTTGATTCGGTCTTTATGCGCAATTGGGGATGTTGTG AGATCAGTGAAACTTTTAAGAAGAATGCAAAAGGAAGGAATAAGCCCTGATAATTACTCTTATAATGCTTTGATTCAAAT TTTCTGTAGGATGAATAAGATTGAGAAAGCTAAAAAGCTTTTTGATTCAATGTCAAGATCTGGCTTGAATCCAGACAATT ACACGTATAGTGCTTTTATAGAGGCACTGTCTGAATGTGGCAGAATAGAGGAAGCTAAGAAGATGTTTTACTCAATGGAG GCAAATGGCTGCTCTCCTGATTCATATATATGTAACTTTATTATTAAAACATTGGTTCGGCAAGACTGTATTGATGAGGC CCAAAATATTGTTGAAAGATGCAAACAGAGGGGAATATCTTTGACGTCTATTCCTAATTTGTAGATTGGTTTTCTACAAG TTTCTGGAAAGCTTCCTGCTAATTCATCGAGATTTCTGCAGACTGCGGAGGATACTGATACAGGATAAAGGTACCTTAGA TTATAAGGATTTGTTGATATGCAGATCTTGTGATATGATGGGATACTTGAAGTATTTATGGTCATGTATGAACTTTGTTT GTAAAGTAAGAAAATAAGTTGTGAGGGACAGGGGGGTAATCATGATTTAAGAGAACTCAGTCTATTTGAAATTTGGACAT AGAAAATTTGAAATCCATTAATATCAGTATGTACCTCCTTAAACCAGTAGATATTTAAACCGAATTATTATTAGAGACAA ATACACAGTGAGGCAGGCAACAAAAAATCACAATATTGTCTAAATGAGGGTGGGAAATAGACTGAAGCATTATTATATAT TAAAATTAATTAGAATAATAGGACACATAATGTTTAATGAGTCTTGTGATCTTATTGGATTAAGAAAGTATTAATTATAC TGCCCAAGTACTTGACCTAGCTTATTAGCATTTTGTACCATTCAGGGATCTCATAATGAATGAATTGTTGTTTCTCTCCT TTTCTTCTTTTAACCTATATTTTCAACATGATATGAAAGCAATATGACGCATGAACAGCTTATCCTAAGTGATAAGAATG ATAATGCAGCTAAAGTATAGATAAGAGTATTCTGTTGATGGAAAATGAAACACATGGACTAGATATTAGTATTACACCCA GGATGCATGGTATAGAGTGTAAAACAACTCAAACAAGAACTGTCCCACTTGCCATGATGAGTATTAACAACAAACACCAT TGAACATGAGGTGCAGGATAAGCACTACCATGATAGTAACCACCAAATAACTTTGTATATATTATTTACATGGTCAGTGT GATAAAGCATGACCAAAAGTTCATTACAGTTTAGCTACACTTGTTATTATCTCTTGCCTTCATGAAACCATCCTTCATGA CCTAACTGGTCATTGTTCCACTTTTGAGTTCCCAAAATATGGAACTCATTTTGCTTCTCCCTTGCTTTATCTGTCCTGTG AGTCTGTGACTCTCCTTCCTGTCTGCTTTGCATTAATTCCGATGATCAAAGTATTAGCTATCCACACCTTCTCATAGATG ACTCGCATATTTCCAGTCAGCATCAGTAGCTGCATTTATTCTGTGGCATGTTTTTAATCCTTGCCATTGCAACTGCCATC TTCACTTCTTCACCTTCCCTGCCTCTGGCCTATTAATTGATCTCACTATTTGCCAATAAGTTAAGATTCCATGTCTCACT GGGAATCTCCAAACCACTTGCAGCCACATTTTGGAAGCAGTCCTCTACGTCACTACGTGGCAGCACATCAAGCTTCCCCT TCAGTGGAATTGGCAACTAATACATGTGAACTCACGTCAAGCTTTCCTGCCAGTTCTTGTCCCCAGTTTCTAGTTTCAGG CCTTGAGCCACTCTGCGACAGCAGCTGACCCTGTTTGGCCATATCTTTGTTGCATTCACATGTTTGGATGAAGAGCCCTG CCAAACCAATGAAAGGTGAAAGATTTGCCATCTTGAAAGGCAGCTAAGAGTGCAGGTAGTTTTCCACAACACACAGGATA ATCACACGGACACCAGCTGGAGAGGCTCTAAATAGTTTGTTCTGAGACGTCAGTCTGCATAGCATCCTCTTCATCCCTTC TGTCGCACGTAGGCTCAACATTCAAGACAGCAAGACGAGCTCATGGATACTCTGTTGATTGTCTTATTTGTCTCTAATTT TTCATTGGATTTTGTATTTGTTCCACTTTTTTGCTTATTACTGCATGGCTTGCTGTGTCTATACCTCATCGTGCTTTCTT CCCTATGTTTGGTACTGTTTGGATTTAATTGACTCTGTATGTATGTCTCTGATTTTACGCGGATTACTACTCTTGGCTGT GTTTGCCTTGTTTGGCTCTGTTGCATTGTTGTTTGCTTACTATATTCTCTTCAAGAACAAGTTGTAGATCAAGCCAATTC AAGCCAGATTAAATTTTTCTCAATTCTTATCTTCTACTAGTCTAGCGGTGCATCATTCCAGCCCCTTACTGATCTTTTGG CTGTTTTTCATTCCTTCTATCTAATACTCTTCTTGAATCATTCTGGCTATCGTTTTGTTATATTCTCTCCAGCAGTGTTG TGGATGCCTCATTTTACTATGTTGTCTCTTCAGCTCAGTGGTTTATCCTGATTCCTGCCCATTATATATTTGTTTGTTTT CTCTTATTAAATGTATTGATTTGTAACAAGCTGAGAGCTTAGTCAGCTTCATCCTGAGGGAGTGTTAGAGTATTAGGAAT GTTAAGTGTTTTTGGAGTCTTATAGTGTTAGTGGCCTTACAGTATCAGGGTTATTGTACAAAGCATGTCTATGTTCTTGG TGGGATATGCATATATGAATCTTCATCTTCTAATACCATATTTACCAAAAAAATTCTTATTCATTTTGAGCAGAGGATTG GAGAATTAGCTACTTTTACATGTTTTTATCAGCACTGTTTTGAGTTTGGTGAGATTATAATGATATGATGTGAAAAGGCT GGAATAAGAGGACTTTTAATATATCAAAGAACACTTCGGGAAACCATGCAGCCAAACTTTATATGGAATTACCTTATATC TCTCCTGCATGTTCTTTCCTATTTTGATTAAATTAAAAATTTACTATTTTTGCAATTTGATGAATTATGTTTTTAAAATT AAAGTTTCATTTGTTAATAAATTCTGCTGAATTGACTTGGCAATGTGATATTGTTAAAATTTTCAGTTTGAAGACAATGA ATGTAACTTTTCTTATGCTCTTTGCAGCTTGAGTATGCCCAATTTCTTGCCTCAATAGTTCAACTCCTTTTATTGTTTGG CGAGTTGCAAATACAATGATCATCTGATCCCTGAGAGTTATAACTGTGTCTTGTGAACAATATTTGAGTTGAGATGGTCA TGACATGAGATGCCATCCTTGTGCAATAAGAAGAGCTAACAAACATATCGTGGAAAGCTCATGGCTGCACTTAGGAAGCA TTGTATCATCAACCATTATTATGCAGGATTGTCAATGTGGATTTGAACTATAATGAACAAAGGAGGTTTTTGTTCTTCCA CTCAGGTGATTTTATGTCTAACAGCAATAGTCATGCCTCTGATAATCTTTTACCATCCATTAGTGGTCCTTTGAAATATA TCTTCATATGTGACTTTTCTGTTTGCAGTTGCTTGATGGCTGTTACTTTAGCAATGAGTATAATTTTCTACTTGTTTTAT ATTTCACTACATTTATTTGTTGTGGTTCTCTTATTTGGTTGCATATAGAAAACTTAAATTCATGACTGAGATACTAGAAC ATGTGAGGTGCCTATGGTAATCCTTTTAACATGTACGATACATGGGTAATCTTGCCCAGTAATTCAAGATAGCCATGAAT GATTGACACTTGGATGAAGATGCAGTGTATCAAATGGTTCCTTAAACATATTGGAATTTTCTACAATTTATTGCTTGCTA ACTTAGTAGTCAGCTTCATTTAAGAATTACATATGTATTTTATTCCGTAGGTGATGATTAAAAGGTGAATTAAAAAATAT TGGATTACGTTATTTGAAGCCAATGCCAACTTTGATGAAAAGTATGTATGAATGAATGACAAGAGCTCAAAATATTGTTT AAAATGCTATTGTCTTGATAGCATGTAAACATAATATGTGAATGGTAGTAAAATATTAACTGCTGCATTAGTGCATTGTA GACTCTGCATTTTCGTTGTAGATGTAATTCTTCTGTGTTTCTTTTACTCTGTTGAAACTCAGCTAAATGTTAAACCACAC TAACTTTATTATTATTTAGGAAAATCATTTCTCATGTAGAGATACCACATTAATTCTTCACAGGAAATATTATGTGTACC TTAAGGTGGCATAATTTCTGGTGCTACAGAGCCTTCAGATCAGGTGTTGTCAAAGTCTTGATCTGTTTCATGATAGACGA GAGAAATAAATCTATCTCAAACCGCTTTGCATAAGATCAATGTAAATTTAATGTACTGTGAGAAGTCTGTGCCTGCTATC TTGGCATCCAATCTGTATCAATTTGGACCAATGCTTTGATTTACATCTGTTGGGAAGAAACTTGCAGATCAAAGTTAACT TAATGTACCTTTGAAAGTCGAATCTATGCTTACTAAATGGTGTCTGACCAATCAAGCTTGATGCTAGGCTTAATCTTAGG GACCAACTTGACCTCTTACTGGAATGTTTATACAGGATGCAGAAAAGACCTGGCAATAGCTGGCTTAAGATTTATTTCAT GAAAACAGCAACCTGGTTCTGTAAAGCTCTCACTACACGCGAAGTCTAGTGAAAGATCAAACCATGAATTGAGTTCAAGG ATTATGGTTTGGGGTTGAAATTTCAATTGCTAAACACTTGTATCAAGGATTTTTTTTATCATGTAATTAACATCAAGCAA TGCTCTTTTGATAGAGTTT
CDS sequence (LotjaGi4g1v0151400.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGTTTAGTGATGGACTAATATCAAATATATTTTCATATAACATGATAATTAGTTGCTTCTGCAGAGCCAAACTGGTGGA TAAAGCATCTGATGTTTTCAAAGACATGCAGCTTAGAGGATTCACTCCCAACCTTGTTACTTTCAATACCCTTATTGGTG GACATTGCAAGGATGGAACAATAATTAAGGCACGGGAGCTGCTGGTGATGCTTTTAGAGAATGGCCTTAAACCTGATATC TTCACTTTTAGTTCTATCATTGATGGTCTCTGTCGAAGAAAGATGACTGAGGAAGCTTTTGAATGCTTTACTGAGATGAT TGAATGGGGGGTCAATCCAAATGCTATTATTTACAATATCTTGATTCGGTCTTTATGCGCAATTGGGGATGTTGTGAGAT CAGTGAAACTTTTAAGAAGAATGCAAAAGGAAGGAATAAGCCCTGATAATTACTCTTATAATGCTTTGATTCAAATTTTC TGTAGGATGAATAAGATTGAGAAAGCTAAAAAGCTTTTTGATTCAATGTCAAGATCTGGCTTGAATCCAGACAATTACAC GTATAGTGCTTTTATAGAGGCACTGTCTGAATGTGGCAGAATAGAGGAAGCTAAGAAGATGTTTTACTCAATGGAGGCAA ATGGCTGCTCTCCTGATTCATATATATGTAACTTTATTATTAAAACATTGGTTCGGCAAGACTGTATTGATGAGGCCCAA AATATTGTTGAAAGATGCAAACAGAGGGGAATATCTTTGACGTCTATTCCTAATTTGTAG
Protein sequence (LotjaGi4g1v0151400.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MFSDGLISNIFSYNMIISCFCRAKLVDKASDVFKDMQLRGFTPNLVTFNTLIGGHCKDGTIIKARELLVMLLENGLKPDI FTFSSIIDGLCRRKMTEEAFECFTEMIEWGVNPNAIIYNILIRSLCAIGDVVRSVKLLRRMQKEGISPDNYSYNALIQIF CRMNKIEKAKKLFDSMSRSGLNPDNYTYSAFIEALSECGRIEEAKKMFYSMEANGCSPDSYICNFIIKTLVRQDCIDEAQ NIVERCKQRGISLTSIPNL
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Gene3D | 1 | 70 | 70 | 1.0E-18 | ||
| PANTHER | 3 | 67 | 65 | 9.2E-73 | – | |
| Pfam | 9 | 57 | 49 | 2.3E-16 | ||
| ProSiteProfiles | 9 | 43 | 35 | 12.836 | ||
| TIGRFAM | 11 | 44 | 34 | 2.3E-11 | ||
| PANTHER | 40 | 252 | 213 | 9.2E-73 | – | |
| ProSiteProfiles | 44 | 78 | 35 | 11.192 | ||
| TIGRFAM | 46 | 80 | 35 | 4.8E-6 | ||
| Gene3D | 71 | 145 | 75 | 7.5E-22 | ||
| ProSiteProfiles | 79 | 113 | 35 | 12.847 | ||
| TIGRFAM | 81 | 115 | 35 | 4.0E-10 | ||
| Pfam | 82 | 126 | 45 | 2.0E-13 | ||
| SUPERFAMILY | 85 | 246 | 162 | 1.18E-5 | ||
| ProSiteProfiles | 114 | 148 | 35 | 11.893 | ||
| TIGRFAM | 117 | 149 | 33 | 1.5E-8 | ||
| ProSiteProfiles | 149 | 183 | 35 | 13.274 | ||
| TIGRFAM | 151 | 184 | 34 | 6.0E-10 | ||
| Pfam | 152 | 196 | 45 | 1.9E-15 | ||
| Gene3D | 159 | 257 | 99 | 4.3E-25 | ||
| ProSiteProfiles | 184 | 218 | 35 | 12.606 | ||
| TIGRFAM | 186 | 220 | 35 | 1.1E-9 | ||
| ProSiteProfiles | 219 | 253 | 35 | 8.495 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of LotjaGi4g1v0151400.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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