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| Field | Value |
|---|---|
| Gene ID | LotjaGi4g1v0158200 |
| Transcript ID | LotjaGi4g1v0158200.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Tetratricopeptide repeat-like superfamily protein; TAIR: AT3G26580.1 Tetratricopeptide repeat (TPR)-like superfamily protein; Swiss-Prot: sp|Q28IV3|RPAP3_XENTR RNA polymerase II-associated protein 3; TrEMBL-Plants: tr|M5XWF8|M5XWF8_PRUPE Uncharacterized protein; Found in the gene: LotjaGi4g1v0158200 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:27769365..27773931) extracted from Lotus japonicus Gifu genome v1.2.
AAACACACAAAATTTCTTTGTTGCAGATGCTCTAAGAACCTTGCATTAGAGATGCTCTAAACCACTTGCATATACTAACA GCACCGAAATACCGAATTGTGTTTATGAAACGACAGCGTTTCTGGCAGAGAGGGTGCCACACGGCACTGGCCTACACAGT GCCACGTTCCCATCATGTCCCTAGAAACGACACGATTCCATGGCCATCTTCATCCGTAACACGCACGCCAATAAATATCT TCCATCAACACTGCCTTTCCGTTCTCTCTCTCTTCTCCTTCTTCACGACGATGGCTGTGAATCTGGGAAACCTAGCACTG TTACTCGACATAGCTTCACCGCGAAGCTTGATCTCGGAGAGAAAACCTCGCCTCGCCGGCGCGGACGCGCTTCTGAGCTT GCCGTTAAAGAGGGACTCCGCCTGCAGCTGCAGTTACCCTTCCGACGGAGAGTTGTCGCGGAGCCGCGTGGTGGTGGCGC GTGGGAAGAAGTCGAATTCGGAGAAGAACGGCGTCGACTTCAACGCGAGTGACGAGGATGGAGGGTTTTGGGATGGGGAT GAGTGGAAGAAGGAAATGCGGCGGCGAGTTGGTGAGTTTGAGGAGAGGAGAGAGCTGGAGAAGATGGCGGAGGAGTTGCA GAATCAGGTTGATGATGATGGTGAAGAAGGTAAGGAGGAGACTGAAGAAGAGAAGAGGATGAGAGTGAAGAAAGAGCTTG AGAAGGTGCGTGTGTGTGTGCTTTTTCATGCTCTCCTTATTAATTAATTAACAGTTCTAAGTTTGTTGAATATAATATGT TAACTTGAATAGATTTTGTTTTTTATCTTAATTTAATACTACTATATGCTAATCTTTTGATTGTTATGAGTTATGACTAT GACCGTAGTCACTCTAATTATGTAAGAATTGCTCATATTTATTGCATACGTGATAGATGTTGAGATGATTCCTGTTAAAG GATCTTCTAAATCGAGGGGATTTACATTAAGGGGTAGTCTATGATTGGTGGAGGATGAAGCTATATCTCCTACTTCATCC TCCTACATACTAAATGGAGCAAGAATTTAATATTTTTCTACACTTCTAAGATACAAAATTCATTTACTTTTCATTTAATG CTTTTACTTTAGTCAGTCTACTATATGTGTGAAACAACTTGCTTATGCAATCCTGGAACTTCTTCTTGTCTCCATCTTCC CCGAGACGTGGAATGTTGTGTTGAGTGTTCGTGAGAGTGTGCATGTTCACCAACCCTGATAGAGTTACATATCACCTGCA GTAGTGGCATGCATATGTGGTACATGACATTAGGAAGACTACGTTTTGGTTGTCCAGTCACTGGTGCCATCGGTATATCT GGCTTTGCTGTCTGGTATGCATATAAGAACAGGAACCATGACAGATGATTTAGAAACTCGGCAGTGTTTTTTTTTTTTTT TTATGTTTTTCCAACTGTAAAGAGCTTAGGTTTAGGGCGTGTACAGAAACAACTCATCATGCTTTGTCAAGGCCTTCCCC ATTTTGATGGGGGGATTTTGTATTGTTAACAGAACAGACGAGAAATGCATCCAGTGATTATTCTTTATTCATTCATCATT GGAATTTGGTGCTTTTTAAAAAAATACTTGCTTCAGTTAGTATGTAGGAGGATTTATGGGAGGATTTTGTAGGAGATAAA TAATTACTCTTAATGCAATCATGTGGAGAGAGATTGACACACATTTTCAACACGAGGATTTAGAATTTTCACATGAGAGT ATCCTCATCCGAAGTCCTATTAATTTTTTTAAGAGTATATTTAGAAGAGTAATCCTATTTCTAAATAACATTTGTGCAAC TTTTTATGCAGAAGGGAGAGAAGAAATGTGTAAGGTGAGTGATAAAAGGTGAGGCACTTGAAAAGTTAATTATAGAAAAA ATGAGTAGGAATAACACAATTCTAATGATGCAGTGATTGATAAATAAGTGGGTTTTTACTCTTGAAGCTTTAACGCTAGA TTATTTGTTTTTCACAAATAACCCTATCTTGTAGTCGTGATGGTTTGTGAACATAAGCAAGTCTCATTCTCCAAAATTTA AGTTTACCTTTTTCACTTCTTGGTTGAGGGTGATGATTGAATTGGCACTTCTTTACTTGATGTTTTTTTGGTTTGATGAA TCAGGTGGCTAAGGAGCAGGCGGAGCGAAGGGCCACGGCTCAGTTGATGTTTGATTTGGGCCAAAAAGCTTATGGAAGAG GCATGTATGGACGTGCCATCGAGTTTCTTGAAGGGGCACTCACTATCATTCCCAGACCTACATTATTTGGTGGTGAGGTT AGTTCATTCTAGCCTAAATAACAATATCTGCATATTCCTTCCTTGGTTTTTTATTTATTTTTGTCTCTTATGGTATAAAG AGGAAGTACAAGGAGTTTTGTTTTTACTTTTTAATTATAAATTTCAGATTTGCATATGGCTGGCTATGGCTTATGAGGCT AATAACCGCCATAAAGATTGCATTGCTCTGTACCAGCAATTAGAAAAGACTCACCCGTGTATTAGCATTCAACGCCAAGC TGCAGAGCTTCGATACATTTTGCAAGCACCAAAGCTCAAGATATCGCAGGAGGAAATGGTGACTATTCCCTTGATTGGTT CTAGTTATGACAGGTGATTTGATTGTTGACTCGTTCATGTGAATTAGAATGCTATTTTTTGTGTCTGTTTCCATTTGCTG TATAGTTATTGACATAGTGTAGCATTATTCCCATCTAATTGGATTCTTAAAATGTTACAACTTATGTTTTACTGAACAAA TATGCTTTCTTTCTGGTCAGTTTCAAGAGTTTTTGGATGATTGATAATGCTTTACTTGCTGGTTAGGAGGCACATGTTTG TTCCTCCCTAACTAAATCTTGAATTCCTCTTATAAGATGGAAAATGTAGCCTGAAATGAAATAGGATCGAAGCTAGGAGG ATTTGTATGTGGTGTGTTTTATTGCTAAATAAGTGATTTACTTTTAAGTTATGTCATTCCATTGCTTTCATGGTGCAGTG GTGTAATTGTTGGCTCTTCAGAATCCACTGCTCTGTGCAGAGGTGTTGAACTGACGGTTAAACTGAATGATAACCAACAA TCAATATTATTTAATTTTTTTTTGTAAATAGAATTGCAGATTGATAGGATACGAAATAATCACCTTTGCTGCAGCAAATT GTGGGGGCAAAGTTTGGTTTTACCAGGGTTTCCATTTCACATTTCAAGAATAGTATATTTCTATATTCTACTTCTTCATT CTCTGCCTATTAACATCTTACACCTGGACTAAATTATTCCCTAGTTTCATGGCTACCACAGTTTATTTCCTAGTATTTCT ATGCATATTTTAGAGGGAGGCCTAAATATGTACTCCCTGATATTTAACAAACATTGTCAATGATGCTATTGTTTATAATT AACTCAATAAGAAACATTAATATATGTCCTCTATATATAGATGCTGAAGAAAAACTGATGACATATAATTAGTAGTAGCC GAATCATTTGCTGTGAAACTGTGGAAGGAAAAAAAAGGCAAATTTCATTGTCTTATCTCTATCTTTTTTCTTTGTCTTTT TTTGGGCTTATAGGGTTTAGGGGTATAAGGAGGATTGGATTTGCTCCAATATGCTCTACTTGTATCATACAGTTATTGTC TCTTTGTCCTATTCTATTCATATTTCTGTTTCAGTTAATTTCCTTGTTTCTTGAAAATCAGAAATATATCTCCTTAATGC TTCAGTTTCCCAATTAAAGAGACACCCATTTAGGAACACTATAAATGCATATACATTGCAAATTTAAAAATGAGATTTAT CTCCTTCATGCTACTTCTGTGAATTTGAGCAAATTATATATTAGATATATTGATTGAAGAATGTCTTATGACATAATTGT AGTTATGCGGGAACATGGAGCGATAAATACAAGGACAAGGATCGAAAAAGTGGACCAGTCACCAATCAGCTTCCATGGTC TAAAGATTACCTTGCTGACTTTCTTGTATGGAAACCTCCCTCTGGGTTAGAGAAAAATCGAGCTTTGTGGATTGGTTTGA CAATTTGGTTGGGATTACTTGGAGCTGCTGTCTTTATTCAAAGATGATGAGTTCTCCAATTTGTGATGATTTTCATTTGT TGTTATCACAATTGTCATTTTTGTTCATATAATGTGAAGTCCATGTTGTAAAGTTGTATGTTTGGAATAGATTTGTAAAT TGTAATTGTAATATAACTCTACGCATCACATAGATAAAGATGTTATTTACCTATTTTTCCCCAGTGTTGTGTTTTTCTTT TGAAATTACAAGAATACATGGAGTAGTTCAATTAAGAAAAGGCGATAGCGTTTGGTAGTAAACAGGTGGGAAGCAAACGG AACAGGATATACTGGTTTCAATCTGTGTTTGTTACAATTTTAAGATGGAATGGAACATGACATAAGGTTTCAGGAACTTA ACACTTTGTTTAGTGGGAAATGGTGAAACGAAAGGAAATGAAAGTGGAAAATGGTGAAAAGGAAATGAAACGAAAACTAA AACTTTT
CDS sequence (LotjaGi4g1v0158200.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGAAACGACAGCGTTTCTGGCAGAGAGGGTGCCACACGGCACTGGCCTACACAGTGCCACGTTCCCATCATGTCCCTAG AAACGACACGATTCCATGGCCATCTTCATCCGTAACACGCACGCCAATAAATATCTTCCATCAACACTGCCTTTCCGTTC TCTCTCTCTTCTCCTTCTTCACGACGATGGCTGTGAATCTGGGAAACCTAGCACTGTTACTCGACATAGCTTCACCGCGA AGCTTGATCTCGGAGAGAAAACCTCGCCTCGCCGGCGCGGACGCGCTTCTGAGCTTGCCGTTAAAGAGGGACTCCGCCTG CAGCTGCAGTTACCCTTCCGACGGAGAGTTGTCGCGGAGCCGCGTGGTGGTGGCGCGTGGGAAGAAGTCGAATTCGGAGA AGAACGGCGTCGACTTCAACGCGAGTGACGAGGATGGAGGGTTTTGGGATGGGGATGAGTGGAAGAAGGAAATGCGGCGG CGAGTTGGTGAGTTTGAGGAGAGGAGAGAGCTGGAGAAGATGGCGGAGGAGTTGCAGAATCAGGTTGATGATGATGGTGA AGAAGGTAAGGAGGAGACTGAAGAAGAGAAGAGGATGAGAGTGAAGAAAGAGCTTGAGAAGGTGGCTAAGGAGCAGGCGG AGCGAAGGGCCACGGCTCAGTTGATGTTTGATTTGGGCCAAAAAGCTTATGGAAGAGGCATGTATGGACGTGCCATCGAG TTTCTTGAAGGGGCACTCACTATCATTCCCAGACCTACATTATTTGGTGGTGAGATTTGCATATGGCTGGCTATGGCTTA TGAGGCTAATAACCGCCATAAAGATTGCATTGCTCTGTACCAGCAATTAGAAAAGACTCACCCGTGTATTAGCATTCAAC GCCAAGCTGCAGAGCTTCGATACATTTTGCAAGCACCAAAGCTCAAGATATCGCAGGAGGAAATGGTGACTATTCCCTTG ATTGGTTCTAGTTATGACAGTTATGCGGGAACATGGAGCGATAAATACAAGGACAAGGATCGAAAAAGTGGACCAGTCAC CAATCAGCTTCCATGGTCTAAAGATTACCTTGCTGACTTTCTTGTATGGAAACCTCCCTCTGGGTTAGAGAAAAATCGAG CTTTGTGGATTGGTTTGACAATTTGGTTGGGATTACTTGGAGCTGCTGTCTTTATTCAAAGATGA
Protein sequence (LotjaGi4g1v0158200.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MKRQRFWQRGCHTALAYTVPRSHHVPRNDTIPWPSSSVTRTPINIFHQHCLSVLSLFSFFTTMAVNLGNLALLLDIASPR SLISERKPRLAGADALLSLPLKRDSACSCSYPSDGELSRSRVVVARGKKSNSEKNGVDFNASDEDGGFWDGDEWKKEMRR RVGEFEERRELEKMAEELQNQVDDDGEEGKEETEEEKRMRVKKELEKVAKEQAERRATAQLMFDLGQKAYGRGMYGRAIE FLEGALTIIPRPTLFGGEICIWLAMAYEANNRHKDCIALYQQLEKTHPCISIQRQAAELRYILQAPKLKISQEEMVTIPL IGSSYDSYAGTWSDKYKDKDRKSGPVTNQLPWSKDYLADFLVWKPPSGLEKNRALWIGLTIWLGLLGAAVFIQR
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 49 | 49 | - | – | |
| Phobius | 50 | 74 | 25 | - | – | |
| TMHMM | 50 | 72 | 23 | - | – | |
| PANTHER | 62 | 394 | 333 | 1.3E-150 | – | |
| Phobius | 75 | 373 | 299 | - | – | |
| Gene3D | 154 | 303 | 150 | 6.7E-8 | ||
| Coils | 161 | 211 | 51 | - | – | |
| MobiDBLite | 176 | 199 | 24 | - | – | |
| SUPERFAMILY | 216 | 288 | 73 | 5.22E-7 | ||
| ProSiteProfiles | 219 | 252 | 34 | 8.113 | ||
| TMHMM | 374 | 392 | 19 | - | – | |
| Phobius | 374 | 392 | 19 | - | – | |
| Phobius | 393 | 394 | 2 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of LotjaGi4g1v0158200.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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