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| Field | Value |
|---|---|
| Gene ID | LotjaGi4g1v0164100 |
| Transcript ID | LotjaGi4g1v0164100.2 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | NHL repeat protein; TAIR: AT1G70280.1 NHL domain-containing protein; Swiss-Prot: sp|Q5ZI67|NHLC2_CHICK NHL repeat-containing protein 2; TrEMBL-Plants: tr|A0A0B2QR98|A0A0B2QR98_GLYSO Uncharacterized protein; Found in the gene: LotjaGi4g1v0164100 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:30871108..30874097) extracted from Lotus japonicus Gifu genome v1.2.
ATGATGAAGTTCGAGAGTGGGTACAGTGTGGAGACTGTGTTTGATGGAAGCAAGCTCGGAGTTGAGCCTTATGCTGTTGA GGTGTTGCCTAATGGGGAGCTTCTGATTCTGGATTCTGCTAATAGTAACCTTTACAGAATCTCCTCCTCACTTTCTCTGT GTAAGTTTTTCAATGTGATTCATACAAGGCTTATGATTCTATTCTGAGTGGTTGGCCAAATTTACTCTTTTGTCTGTGGC GATCGTCATGCTTTGAAAAAAAATCTTCATAACGTCTTCAAGATTAGATGTCTGATATGGTAGTTTTTTATTTTCGTTGC ATCACATGGACTAGTGTTCAGATTGTACTGTACCTTGTATTTGGTACTTGTGTGCTGCATAACTTTGTTCTTTCAAGGAA GGAGAATCCTGCATCTCTTACAATGCGAAGTTGTAATGCTTTGTTTTTCCCTATATCACCTGCAGCATTCCCTCTTGTAT TTTTTTCTCTTCAAATATAATCAGGAGTCTAACTACAATAATTTAGACCATTGGTATCATGTCAGGTCCAGTGTTATCAA ATATCTGCCATGGTGGAATCTCATGGCGGATTTTTGGCTCTCTGCCATAGCCGACAACCCGCCATAGTCCGCAATAACCC ACCATAATCCGCTATCTGCCGTCATTATTTGTCAAATATAGCTGGGTTTTGGCTCTCTACCATAGTCCGCCATCCGCCTT TAACAACATTGGTCAGGTCACAGTCCTATTTTGTGGTTTGTTATAGATCTTCAAGTGTCAATCACAATCTCAACCATTGT TGTGCGGTACTTTACCTTCTAAAGTGATTTTGTGTGATTCTCTCACTTTAGAGGTTTCAAGGAGCAAGATCCTTTTTGGT GTATTGGCAGTGTACGATTACCATATAATTCCTATGGCTGATTTCTCTATTCTTCACTCTGTCAGGTTTGAACAGCATAA AATGCCCTACTCAACTCCTCTTTTCATTGAAGACATCAGAACAGTTAATTGATACAATGTGCATCTGTATATCTAATTAG TTAGATCATATCACATGATTTAATGTCACTGTAGTTCATGGTTATGAGCTTAATGCAATTTGAAGTTGGCCGATTCCTTA ATTGTAATGCAATTTGAACTCTTTGTCTGTCTGTGCGCTTCTCTTTGCAACATAATTATTGTGCTAGATGAACTCTTAGC ATGGGTTTATTTTGTTCAGCTGAGATATATCATGTTCATTGCAATTCTGCAGATAGCAGACCAAAGCTGGTGGCTGGATC AGCTGAAGGATATTCTGGACATGTTGATGGGAAGCTTAGAGAGGCTAGAATGAACCAGCCAAAGGGAATAACTGTTGATG ACCGAGGAAATATTTATGTTGCAGATACTATGAATATGGCAATTAGGAAAATTAGTGATTCAGGTAGATCAATCTCTCAT CCTCCTCTGCCTTTGAGAAATTATTCTTTCAATTGTCTATGGATAACCTGCCCAAATGGTTACTTATTGCTAGATATTCT AGACTACTTACAAATCCTGTGTGTGCATACTCTTGTAATGTTATCGTAGGCCCGGTAATATTTGATTATAAAAATGTTAC ACTTGTCACATTAGTGTCAGAAGTGAGAACTTTTCATTGAATGACTTCTATTTTCAGGGATCACAACGATTGCTGGAGGA AAATGGAGCCGTGGAGGGGGCCATGTTGATGGACCAAGTGAAGAAGCTAAATTTTCTGATGACTTTGATGTGGTTTATGT TGGAAGCAGTTGTTCTCTACTCATTGTAGATAGAGGAAACCGAGCTATCAGAGAGGTCCAACTCCACTTTGATGACTGTG CTTATCATTATGGAAGTGGATTCCCACTTGGTAAACTAAATCATCCATACTTTTCTGTTTAATTTTGTTATGTTATTGTT AATCACAAGTTTAGACTTATTGTCTTCAACATTACAGGTATTGCCATGCTTGTTGCGGCTGGGTTCTTTGGGTATATGCT GGCATTGCTGCAGCGTCGGCTTGGTACAATTGTGGCATCCCAGGATGTGAGTTCTAAGCCATGTCTTCTTCTTTCTGATG CATTATACTGAATGAGACTGCTATAGAACTTGATTGTTCAAAGATGATTATGATTCTCCATTGATAGATCTTAATGAATT AACACAGTAGATATCCCGAATTATTTTGAGAACTACTGTAATTTTAAACTTATACTTTTTAGCTGCGCCTTGTTAAGTGA TAGTTAATTTGTAATAGTTGGTTACATGTATATAGTGATGGATTTCACAATCAGTAATTTATCACTTCCTTTTTGTAGGC CCCGGTTCCGGTAACAGTGAGGTCTTCTGTTTCCCCAAGTCCATATCAGAAGCCCTTGAAATCTGTCAGGCCTCCTTTAA TTTCATCTGAATATGAACATGATAAGCAGGAAGAAGGTTTCTTTGGATCACTTGCGAAGCTTCTTGCGAATGCTGGTGCA TCAATGGTGGAGATAATGGGAGGATTATTTCCAGCTTTCAGAAGAAAACCACAGAGCTACCAATTTCAAAGGCAACAGCT GCTCCAACAACCTCCAAAGCAAGTAAATGATTGGCCTGCACAGGAAAGTTTCGCGATTCCCCGTGAAGATGAGCCCCCTT CTATCGACCCAAGAACCCCAACCCCTCGAAAAACTTACCCTTTCATGTCTAAGGATGCTGAGAAAATGCAGCAGTTACGG CAAAGTAGAGCGTTCTATAGCAGTGGATGGGATGGAGATCTTCAGCAACAACAGAGACATCATCATCGCCATCAGTATAG TTCATCAGTCCCTCATACTTACTATGAACAGAGCCATGAAACCACTAATGAGATAGTTTTTGGGGCAGTGCAGGAACAGG ACAGGAATCAGGAGTCTGTTATCAAGCATGTGGAATATGGGGGCTCATTGTTTGAACATAACAATATTCGGCCTCGAATG AGTTCTTTGGGTTATGCCCACAAGTACTAA
CDS sequence (LotjaGi4g1v0164100.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGATGAAGTTCGAGAGTGGGTACAGTGTGGAGACTGTGTTTGATGGAAGCAAGCTCGGAGTTGAGCCTTATGCTGTTGA GGTGTTGCCTAATGGGGAGCTTCTGATTCTGGATTCTGCTAATAGTAACCTTTACAGAATCTCCTCCTCACTTTCTCTGT ATAGCAGACCAAAGCTGGTGGCTGGATCAGCTGAAGGATATTCTGGACATGTTGATGGGAAGCTTAGAGAGGCTAGAATG AACCAGCCAAAGGGAATAACTGTTGATGACCGAGGAAATATTTATGTTGCAGATACTATGAATATGGCAATTAGGAAAAT TAGTGATTCAGGGATCACAACGATTGCTGGAGGAAAATGGAGCCGTGGAGGGGGCCATGTTGATGGACCAAGTGAAGAAG CTAAATTTTCTGATGACTTTGATGTGGTTTATGTTGGAAGCAGTTGTTCTCTACTCATTGTAGATAGAGGAAACCGAGCT ATCAGAGAGGTCCAACTCCACTTTGATGACTGTGCTTATCATTATGGAAGTGGATTCCCACTTGGTATTGCCATGCTTGT TGCGGCTGGGTTCTTTGGGTATATGCTGGCATTGCTGCAGCGTCGGCTTGGTACAATTGTGGCATCCCAGGATGCCCCGG TTCCGGTAACAGTGAGGTCTTCTGTTTCCCCAAGTCCATATCAGAAGCCCTTGAAATCTGTCAGGCCTCCTTTAATTTCA TCTGAATATGAACATGATAAGCAGGAAGAAGGTTTCTTTGGATCACTTGCGAAGCTTCTTGCGAATGCTGGTGCATCAAT GGTGGAGATAATGGGAGGATTATTTCCAGCTTTCAGAAGAAAACCACAGAGCTACCAATTTCAAAGGCAACAGCTGCTCC AACAACCTCCAAAGCAAGTAAATGATTGGCCTGCACAGGAAAGTTTCGCGATTCCCCGTGAAGATGAGCCCCCTTCTATC GACCCAAGAACCCCAACCCCTCGAAAAACTTACCCTTTCATGTCTAAGGATGCTGAGAAAATGCAGCAGTTACGGCAAAG TAGAGCGTTCTATAGCAGTGGATGGGATGGAGATCTTCAGCAACAACAGAGACATCATCATCGCCATCAGTATAGTTCAT CAGTCCCTCATACTTACTATGAACAGAGCCATGAAACCACTAATGAGATAGTTTTTGGGGCAGTGCAGGAACAGGACAGG AATCAGGAGTCTGTTATCAAGCATGTGGAATATGGGGGCTCATTGTTTGAACATAACAATATTCGGCCTCGAATGAGTTC TTTGGGTTATGCCCACAAGTACTAA
Protein sequence (LotjaGi4g1v0164100.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MMKFESGYSVETVFDGSKLGVEPYAVEVLPNGELLILDSANSNLYRISSSLSLYSRPKLVAGSAEGYSGHVDGKLREARM NQPKGITVDDRGNIYVADTMNMAIRKISDSGITTIAGGKWSRGGGHVDGPSEEAKFSDDFDVVYVGSSCSLLIVDRGNRA IREVQLHFDDCAYHYGSGFPLGIAMLVAAGFFGYMLALLQRRLGTIVASQDAPVPVTVRSSVSPSPYQKPLKSVRPPLIS SEYEHDKQEEGFFGSLAKLLANAGASMVEIMGGLFPAFRRKPQSYQFQRQQLLQQPPKQVNDWPAQESFAIPREDEPPSI DPRTPTPRKTYPFMSKDAEKMQQLRQSRAFYSSGWDGDLQQQQRHHHRHQYSSSVPHTYYEQSHETTNEIVFGAVQEQDR NQESVIKHVEYGGSLFEHNNIRPRMSSLGYAHKY
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 178 | 178 | - | – | |
| PANTHER | 1 | 434 | 434 | 1.6E-245 | – | |
| PANTHER | 1 | 434 | 434 | 1.6E-245 | – | |
| Gene3D | 5 | 165 | 161 | 7.8E-33 | ||
| SUPERFAMILY | 10 | 166 | 157 | 7.85E-10 | – | |
| Pfam | 81 | 106 | 26 | 8.1E-5 | ||
| TMHMM | 175 | 197 | 23 | - | – | |
| Phobius | 179 | 199 | 21 | - | – | |
| Phobius | 200 | 434 | 235 | - | – | |
| MobiDBLite | 312 | 332 | 21 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of LotjaGi4g1v0164100.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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