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LotjaGi4g1v0167400.4

Overview

Field Value
Gene ID LotjaGi4g1v0167400
Transcript ID LotjaGi4g1v0167400.4
Related isoforms 3
Lotus japonicus genome version Gifu v1.2
Description ADP-ribosylation factor; TAIR: AT5G14670.1 ADP-ribosylation factor A1B; Swiss-Prot: sp|P51823|ARF2_ORYSJ ADP-ribosylation factor 2; TrEMBL-Plants: tr|A0A151SJJ5|A0A151SJJ5_CAJCA ADP-ribosylation factor 2; Found in the gene: LotjaGi4g1v0167400
Working Lj name n.a.

Sequence information

Genomic sequence (LjG1.1_chr4:31887433..31890470) extracted from Lotus japonicus Gifu genome v1.2.

ATGGGGCTGACATTCACCAAGCTTTTCAGTCGGCTTTTCGCCAAGAAGGAAATGCGAATTCTGATGGTTGGTCTTGATGC CGCTGGTAAGACCACCATCCTTTACAAGCTCAAGCTTGGAGAGATCGTTACCACAATTCCTACCATAGGTAAGTTTCTCG ATTGTTCTATTTCTTATGAGTTATGCTTACAGTATGTTAGGCTCATGTGCTTGTGTTATTGTGTGTAACTGTGTATAATA CTTCACCTCTAGGGATATTAATATGCATACACACCCATTATTGATCCTTTATGATAACTTCACTTATCTTAGCTAAATTA CTGTATTTCGTTTTCAATAAGCTTTTAATATGAATCATACATTGATAAATCTGTATAGAAGTCTAAACTTGAATCATACA ATGATACAATGTGTGATGCTTCATATGAAATCCCTGATTAACCTTTTCCTACCTCGTGTTACTTTGGACCTACGTATTCT CCATGAATATTGTGACTGTTTATGCTGCTTCTATGTGTATGGATTTATTTTTATTTTTCATATTACAGGGTTCAATGTGG AGACTGTGGAATACAAGAACATTAGCTTCACTGTTTGGGATGTTGGGGGTCAGGACAAGGTTTGAAGTTTGATCCTTATG CCTTTATGGTTCTGAGTTAAGTCTTGGAGTCAGTGGCTTAATACTTATGCTTTGATTTGCAGATTCGTCCCTTGTGGAGG CACTACTTCCAGAACACACAGGGTCTTATATTCGTTGTAGACAGCAATGACAGGGACCGAGTTGTTGAGGCCAGAGATGA GTTGCACAGGATGTTGAATGAGGTACCATAGTCAATTTGGTTAAGCTTTTAGGTCATCATATTTGATGTCTTTGTTCTCA TGTGAGTTCATGTTAGATATTCATCTGACACTTTAGAGTGTAGATAGAAAGTTCTCACTATCATATTAAATCATTTGTTT TCTATTGTCTGTTAAAATGTGTATATATATATATATGTATATATATATAACTAAATTGCTATAGTATTGGTTGCTTGCTC ATAATACTCCTAGATAGTATTGTTTGGGATATATCTTTGATATGTTGGAATAAGTATAGTCTTGTTATTTACTGCGTTGT CAGAGGAATTGGAGTACGTACTCCTTTATTAATTTGTTGAAGAGAAACAAAATGGATTCTAAAAGTGCAAAGGCTTTAGC TTATATAACAAAATGGATTCTAAAATTTTGACTAGGAAAGATAATGAGTATACTAAAGAAAAGACAGGGTTGTTGGATAT TAGTTGAGTTTTACATGATCTATTTAATGATGGCTGTGTAATTATTGAATTGGCCAAATCATCTATTGATGAACTAGACA TAGAAGCTATACTTTTTTTCTAATGATGGGAATGGGAGGGATGAAAAAAATATAATTATGGCAGTAAATAGTGGGCTCGT TTGTTTCTGCTAAAAAATAAGTGATTTAAGAGTTGAATAGAAATTTGATTTTATTTGAAGAGATTTTATTAAAAGCAGAA ATTAAATTTTTGTTTACAAATATAAAAATTGCTTTTCACTTAGAAAAGTTACTAGAAATAATTGATTATTTTAAATCTAC TAGAAATAACTTAAAGAAATAATCAGATTTCTGCTTAAGTGTATACAAACAGTACTAACAGTTCAAAAAATGCATAAATT GATTTTTTTTTTAAATAAGTGACTATTTCACAAAAAAAAGCAGATACAAATGTGCCCAGTAATTTAATAGAGCAAGCAAG GGATTTTAAATAGGAATAATGGTGTTTTTCATGACATTCTGATATTGGTTGGAAAAATGTGTTATTTATATAACAGGTTT ATGAAGTTTTTGTTGATTAGAGTGCAAACTTTGGTTGTTTTTCTATCATTGAAGAGGACCACCTAGCAGAAAGCTTTTCT ATTTACATTAAAAGCAAAGGATTTAGCGTATGTTTGGTTTCAATTCTTGCACTACTAGATGTGGATCAATCTTCCCAAAA GAAACTATTTATTGCTTCGAGTTGATGAGGATCCCTACTATGTGTGGATCCACTTGTATTTTCCAAACTCACACTTAAAT AGGAATGACATTGTTTTTCTTGACATTGATTGGAAAAATATGTAATTTAAATAATTTCTTTATGAAGTTTTCGTTGGTGA GTGCAAATTTTGTTTTTGATATTGTGCAATGGTGCTGGGTGATCCATGTAGTCAACCTTGCTTAGTGGGTAAGACTTGTT GTTTATGAGGCTGTGTTATCATATATTGAGTTTCAAAGGAGTTTTGAAGAATTCACCGTGTGTCCTATTAATCATTTCGT AGCTGAAGCAGTCAGCACTTTTGTAACTGCAATTGTTAATGATGATATAGTAGTCTACCAACTGATGTTCAGTTGCTTAA AATGGGTGTTTTCCTATCAATGAAGAGGACCACCTAACATGAAGCTTTTCTAATTTCTATCTATGGTCACTTTGTTATTG GACCCATTTTTTTTCCTGGATTGTAATATCTGTAATGTTGTACTTGTCTACTTGATAATCATTTTGATGGTATATTTTGG AAGTTGGATACCAGTTCATTCTGGTCAAGCTCCTGGGAAGATAACAGCACATTGATTGGCCTTTTGGCCAGAATCAATAG CATGTCTATACTGTTTCTTTCTGTTAATTATATTCTTGTGATAAATTTGGCATAATCCTGGAACTGTATATTTTAATTAT CAGGATGAACTGAGAGATGCAGTACTACTTGTATTTGCTAACAAACAAGATCTTCCCAATGCAATGAATGCTGCTGAAAT TACTGACAAACTAGGTCTCCACTCTCTCAGACAGCGTCACTGGTATATATTTTGATCACGTTGCCCTTTCTGTCCAGGAT TGATAGTTCTCTCGTTGTGAGCTAACATGCTTTGTGGTTTTTTCAGGTACATCCAGAGCACTTGTGCAACCTCTGGGGAG GGGCTTTATGAGGGTTTGGACTGGCTTTCCAACAATATAGCCAACAAGGTAGCTATTGATTTCCTGTCCAAATTTTGA
Download Genomic Sequence

CDS sequence (LotjaGi4g1v0167400.4) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGGGGCTGACATTCACCAAGCTTTTCAGTCGGCTTTTCGCCAAGAAGGAAATGCGAATTCTGATGGTTGGTCTTGATGC CGCTGGTAAGACCACCATCCTTTACAAGCTCAAGCTTGGAGAGATCGTTACCACAATTCCTACCATAGGGTTCAATGTGG AGACTGTGGAATACAAGAACATTAGCTTCACTGTTTGGGATGTTGGGGGTCAGGACAAGATTCGTCCCTTGTGGAGGCAC TACTTCCAGAACACACAGGGTCTTATATTCGTTGTAGACAGCAATGACAGGGACCGAGTTGTTGAGGCCAGAGATGAGTT GCACAGGATGTTGAATGAGGATGAACTGAGAGATGCAGTACTACTTGTATTTGCTAACAAACAAGATCTTCCCAATGCAA TGAATGCTGCTGAAATTACTGACAAACTAGGTCTCCACTCTCTCAGACAGCGTCACTGGTACATCCAGAGCACTTGTGCA ACCTCTGGGGAGGGGCTTTATGAGGGTTTGGACTGGCTTTCCAACAATATAGCCAACAAGGTAGCTATTGATTTCCTGTC CAAATTTTGA
Download CDS Sequence

Protein sequence (LotjaGi4g1v0167400.4) extracted from Lotus japonicus Gifu v1.2 Proteins.

MGLTFTKLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRH YFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCA TSGEGLYEGLDWLSNNIANKVAIDFLSKF
Download Protein Sequence

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
SMART
SM00178
1 177 177 1.6E-25 –
SMART
SM00177
1 181 181 6.1E-136 –
PANTHER
PTHR11711:SF314
1 180 180 4.9E-154 –
PANTHER
PTHR11711
1 180 180 4.9E-154 –
Pfam
PF00025
5 177 173 3.7E-80
IPR006689
ProSiteProfiles
PS51417
11 177 167 25.659 –
SUPERFAMILY
SSF52540
14 180 167 2.93E-58
IPR027417
TIGRFAM
TIGR00231
16 157 142 2.4E-23
IPR005225
SMART
SM00175
18 180 163 0.0041 –
CDD
cd04150
18 176 159 1.41274E-126 –
Gene3D
G3DSA:3.40.50.300
18 177 160 2.9E-71 –
PRINTS
PR00328
19 42 24 1.5E-19
IPR006689
PRINTS
PR00328
47 71 25 1.5E-19
IPR006689
PRINTS
PR00328
74 99 26 1.5E-19
IPR006689
PRINTS
PR00328
119 140 22 1.5E-19
IPR006689

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0005525
Molecular function GTP binding Interacting selectively and non-covalently with GTP, guanosine triphosphate.
Subterm of

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Expression data

Expression pattern

Expression pattern of LotjaGi4g1v0167400.4, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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