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| Field | Value |
|---|---|
| Gene ID | LotjaGi4g1v0173200 |
| Transcript ID | LotjaGi4g1v0173200.3 |
| Related isoforms 2 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | 1-deoxy-D-xylulose 5-phosphate synthase; TAIR: AT4G15560.1 Deoxyxylulose-5-phosphate synthase; Swiss-Prot: sp|Q6YU51|DXS2_ORYSJ Probable 1-deoxy-D-xylulose-5-phosphate synthase 2, chloroplastic; TrEMBL-Plants: tr|A0A0L9TMU0|A0A0L9TMU0_PHAAN Uncharacterized protein; Found in the gene: LotjaGi4g1v0173200 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:34669420..34673653) extracted from Lotus japonicus Gifu genome v1.2.
GGCATGTTTGATTTGAATACAAGAAAATTATTGTGAAACCAAAAACACGGTGAACTGTAGAAATAATTTCTCTTAGCTTA GTTTTTGTGACCGTCAACCATGATTTTATCTTTAGTTTGATTTTCCACCGTGTATCCAAATAAGTTATAGCAGATGTTCT TGTTTGTGGTTAATTAACACAAGAGTTATTTTCTAGTATATAATTTTTGCTGGCTTGTGTATAAGATTATATTTCCCATA TTTTATTTGTCAGGATCTTGAACAACTGGCAGCAGAGCTGAGAGTAGACATTGTACACTCTGTTTCAAATACTGGTGGGC ATCTTAGCTCAAGCTTGGGGGTGGTGGAGTTAGCAGTGGCTCTGCATCATGTTTTCAATACCCCTGAAGACAAGATCATA TGGGATGTTGGCCATCAAGTCAGTTTTTTCCCTCTTGCTGTTGTTTTTTAATGCAAAATGAATTAGAAAAAAAAATTACT TGTATTCATCTTGGAGAGGAGAGAAATTTCAATGAGAGAAGAAGAAGAAAAGAGGTCAGGAGAGAAGAGTATAGCAAAGG AGGTGAACTAAAAGAAAAATTATTAACATAACTTGAATTGATATGAAGAAGAAAGCTTAGGTCAAATTTGAAGTATAATA CTCCCTCCGGTCCTATTTATCCTATTTATAAGCAACAAAAAAAAATTCATATAGTTTAAGAAATGTAGTTATACTAGATA AAATGCATTAAATTTGTCTTAAATCAAAATAAACTTCCAAAATTACCCTTTGTTATTAGTGTTGGAAAGTGGGAAAGAGA GAGAATAATTAATGAGACACATTTTACAAGTTAGAATTAATAAGGGCATCATTGGAAAAAATTAATTAATATAGCTCAAA CTTTCATTTGGTTCTTATAAAAAGGACCAAGGTTTTTCTTCTCTTTCATGCTTATAAATAGAACCGGAGGGAGTAACTTT TTTTGAACAACAATTTTTTTATCATGATTGATAGCAGAAGTTTGGTAGAGATGACGCAAAAAGTCAAATTTGAATTATTA ATGATAATAATAGATATTAATCAATTGAATATATATATTTTATTGGTACATGAATATATAAATTTTAAATTATTTTTTAT CCACAAGAAGACAAAGTTATCCCCTGATCTTAACTCCTCTCCTCTCTCTTCATTTCCCTTTCTATTTGGTGGAGATCGTT GATAACATAACATATAGTTAACGTCACCCAGCCTATTAATTGTGTATAAAAGCATTAAAAAACTTTAAGGAGGGATCAAA AAGTTGAGGTTGGAGGGATTTTGCTCCCCTCCATTTCCCTCCCCTCCCCTCCCCTCCTAAAATTTGAACCAAACAAAATC AGATTTTAAAAATCCCTCCCCTCCCCTCCCCTCCCCTCCGTTCTCCTCCAACCAAACAATTCCTAAGGATGGAAGTTATA CTAAAGATGTTGTATATTGGTGTATAACCTATTTATTAATTAGTTTTTGAAATTTGCTCATACTAAAACTATTTCAGATT TCTAGGCTGCATGTCCATTTTTTTTTATCAATTCTTAATTGTTATCAAGAGCTGTGCCATATGTGTAAGGGTCTAAGAAG AAGTAACAAAATTGCAGGCATACCCTCACAAGATTCTCACAGGTAGAAGGTCCCGCATGCACACAATTAGGAAGACATCA GGGCTAGCAGGCTTTCCGAAAAGGGATGAGAGCATTCATGATGCTTTTGGGGCAGGACACAGTTCTACAAGCATATCAGC TGGTCTTGGTGAGATTCTGGAATCAATATATCAGAGTTGTTAATTGTGGATATTGCCGAAACTGAGGGTCATGGTGGAAA GCCGAAATCCTGCCATACATGACAAATAATGGCACAATATGGCGGGATATTGCAGTCATATGGCGGGATTTCGGCCATGG CGGAAAGCCAAAAAGCCGCCATGAGAAAATGGTGGCGGATATTTGATAACACTGCAATATATAAGATCTATACATGTTTT TACATTATTCAATGGATGTGGAGATGCATTTATCTATCTGATTGAACCACAGTTCTCAACTCTCTTATTTTTTGTTTCAA TTTGTTTTTGTCTAGGCATGGCAGTTGCAAGGGATCTATTGGGAAATAAAAACAGTGTAATTTCAGTGATTGGAGATGGA GCAATGACTGCAGGGCAGGCTTATGAGGCCATGAACAATGCAGGATTCCTTGATACTAACTTGATAGTTGTACTTAATGA TAACAAGCAAGTCTCTTTGCCAACTGCAACACTTGATGGCCCTGCAACTCCAGTTGGAGCCATCAGTAGTACTTTAAGCA AACTTCAAGCAAGCACTCAATTCCGCAAACTCAGAGAAGCTGCAAAAGTAAGCATCTAGAACTTATACTAGAACGTAGCA AATATTCATAGCATGTTTTGATAAACTTCTCTTTTGTCAGAATCAATTCTAAAACTCAGAAGCTACTAAAAAAAGCTTCT CCTCATAATTCATTATGACTTCAGAATCAATTGTAGAAAAATATACTAAGGCACTCAATATCCTTTGGTATTTGCCTCTA ATTTTATTTGCTATAGAGCATCACAAAACAAATAGGAGGACAAACACACCAAGTTGCTGCAAAAGTAGATGAGTATGCAA GAGGTATGATTAGTGCTTCTGGTTCTACATTTTTTGAGGAGCTCGGGTTATACTACATCGGCCCTGTGGATGGTCATAAT GTTGAAGATTTAGTCACCATTTTTGAGAAAGTGAAAGCAACGCCTGCCCCAGGTCCAGTTTTGATTCATATTGTGACAGA AAAAGGGAAGGGATACCCCCCAGCTGAAGGAGCAGATGATAAAATGCATGGTAAGAAATTTGTTTTTCTTTTGTTTTTAA TTTTAACAATGTCTTGATGAGAAAATCTTAAGGATTCTCATTCTTTCTCACACTTTCAGGTGTTGTGAAGTTTGATCCAA AAACGGGTCGCCAGTTTAAGCCAAAACCCTCCACACTTTCATACACCCAGTACTTTGCTGAATCTTTGATAAAGGAAGCT GAAATCGACAACAAGATAGTAGCTATTCACGCAGCAATGGGTGGAGGAACTGGCCTCAATTATTTCCAGAAAAGGTTTCC AGACCGCTGTTTCGATGTCGGGATAGCTGAACAACATGCTGTTACCTTTGCAGCTGGATTAGCTACTGAAGGCCTCAAGC CATTTTGTGCGATTTATTCATCATTCCTGCAACGTGGTTATGATCAGGTGAGCCAAAACATCACATAAGAATATGTCCTA ATGATCTATTATCCATGTCACTTTTCTGGTTACAAAACAATTTCATCACTACTGTAATTATTGTGTATGAAGGTTGTCCA CGATGTTGATCTTCAGAAATTACCTGTCCGATTCGCTCTGGATAGAGCTGGTTTGGTTGGTGCAGATGGACCTACTCATT GTGGAGCATTTGACATCACTTTCATGGCTTGCTTGCCCAACATGGTTGTCATGGCTCCATCTGATGAAGCTGAATTGATG CATATGGTTGCAACTGCAGCAGCAATAGATGATAGACCAAGCTGCTTTAGATTCCCAAGGGGTAATGGAATCGGAGCCAC TCTTCCCCTTAATAACAAAGGAACCCCTCTAGAGGTTAGCATAAATTTCTCAGAGGCAGTTTTACAAACACATTGCAGTA TGGATAAGAAACCAGATTGAAATTCTTTTGTTATGCAGATAGGAAAAGGCAGAATTCTGATAGAAGGCAGCAACGTAGCT CTTCTAGGATACGGTTCAGTAGTTCAAAATTGCCATCATGCTGCAAAAATGCTTAGCGCAATAGGAATTGATGTTACCGT TGCTGATGCTAGGTTCTGCAAACCTTTGGATACTGATCTCATTAAGCTACTAGCTAAAGAGCATGAAATACTAATCACAG TGGAGGAAGGTTCTATTGGAGGCTTTGGATCGCATGTTTCACAATACTTAAGCTTAGCTGGGATCTTGGATGGTCCTCTG AAGGTAAATCATCTTCGAAGAACATGTTAATCTGTCTTAAATTTCATTTCATTGTTGTTCTAATTTCCTTTCGAACTTCA CTTGCAGTGGAGAGCGATGATGCTTCCTGATAGGTACATTGACCATGGATCACCCCAAGATCAGACTGAAGAAGCAGGTC TATCATCAAAGCAAATTGCCGCCACGGTCTTGTCTCTTATGGAAAGACCAAAAGAAGCTATTCTATTCAAATAA
CDS sequence (LotjaGi4g1v0173200.3) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGCACACAATTAGGAAGACATCAGGGCTAGCAGGCTTTCCGAAAAGGGATGAGAGCATTCATGATGCTTTTGGGGCAGG ACACAGTTCTACAAGCATATCAGCTGGTCTTGGCATGGCAGTTGCAAGGGATCTATTGGGAAATAAAAACAGTGTAATTT CAGTGATTGGAGATGGAGCAATGACTGCAGGGCAGGCTTATGAGGCCATGAACAATGCAGGATTCCTTGATACTAACTTG ATAGTTGTACTTAATGATAACAAGCAAGTCTCTTTGCCAACTGCAACACTTGATGGCCCTGCAACTCCAGTTGGAGCCAT CAGTAGTACTTTAAGCAAACTTCAAGCAAGCACTCAATTCCGCAAACTCAGAGAAGCTGCAAAAAGCATCACAAAACAAA TAGGAGGACAAACACACCAAGTTGCTGCAAAAGTAGATGAGTATGCAAGAGGTATGATTAGTGCTTCTGGTTCTACATTT TTTGAGGAGCTCGGGTTATACTACATCGGCCCTGTGGATGGTCATAATGTTGAAGATTTAGTCACCATTTTTGAGAAAGT GAAAGCAACGCCTGCCCCAGGTCCAGTTTTGATTCATATTGTGACAGAAAAAGGGAAGGGATACCCCCCAGCTGAAGGAG CAGATGATAAAATGCATGGTGTTGTGAAGTTTGATCCAAAAACGGGTCGCCAGTTTAAGCCAAAACCCTCCACACTTTCA TACACCCAGTACTTTGCTGAATCTTTGATAAAGGAAGCTGAAATCGACAACAAGATAGTAGCTATTCACGCAGCAATGGG TGGAGGAACTGGCCTCAATTATTTCCAGAAAAGGTTTCCAGACCGCTGTTTCGATGTCGGGATAGCTGAACAACATGCTG TTACCTTTGCAGCTGGATTAGCTACTGAAGGCCTCAAGCCATTTTGTGCGATTTATTCATCATTCCTGCAACGTGGTTAT GATCAGGTTGTCCACGATGTTGATCTTCAGAAATTACCTGTCCGATTCGCTCTGGATAGAGCTGGTTTGGTTGGTGCAGA TGGACCTACTCATTGTGGAGCATTTGACATCACTTTCATGGCTTGCTTGCCCAACATGGTTGTCATGGCTCCATCTGATG AAGCTGAATTGATGCATATGGTTGCAACTGCAGCAGCAATAGATGATAGACCAAGCTGCTTTAGATTCCCAAGGGGTAAT GGAATCGGAGCCACTCTTCCCCTTAATAACAAAGGAACCCCTCTAGAGATAGGAAAAGGCAGAATTCTGATAGAAGGCAG CAACGTAGCTCTTCTAGGATACGGTTCAGTAGTTCAAAATTGCCATCATGCTGCAAAAATGCTTAGCGCAATAGGAATTG ATGTTACCGTTGCTGATGCTAGGTTCTGCAAACCTTTGGATACTGATCTCATTAAGCTACTAGCTAAAGAGCATGAAATA CTAATCACAGTGGAGGAAGGTTCTATTGGAGGCTTTGGATCGCATGTTTCACAATACTTAAGCTTAGCTGGGATCTTGGA TGGTCCTCTGAAGTGGAGAGCGATGATGCTTCCTGATAGGTACATTGACCATGGATCACCCCAAGATCAGACTGAAGAAG CAGGTCTATCATCAAAGCAAATTGCCGCCACGGTCTTGTCTCTTATGGAAAGACCAAAAGAAGCTATTCTATTCAAATAA
Protein sequence (LotjaGi4g1v0173200.3) extracted from Lotus japonicus Gifu v1.2 Proteins.
MHTIRKTSGLAGFPKRDESIHDAFGAGHSSTSISAGLGMAVARDLLGNKNSVISVIGDGAMTAGQAYEAMNNAGFLDTNL IVVLNDNKQVSLPTATLDGPATPVGAISSTLSKLQASTQFRKLREAAKSITKQIGGQTHQVAAKVDEYARGMISASGSTF FEELGLYYIGPVDGHNVEDLVTIFEKVKATPAPGPVLIHIVTEKGKGYPPAEGADDKMHGVVKFDPKTGRQFKPKPSTLS YTQYFAESLIKEAEIDNKIVAIHAAMGGGTGLNYFQKRFPDRCFDVGIAEQHAVTFAAGLATEGLKPFCAIYSSFLQRGY DQVVHDVDLQKLPVRFALDRAGLVGADGPTHCGAFDITFMACLPNMVVMAPSDEAELMHMVATAAAIDDRPSCFRFPRGN GIGATLPLNNKGTPLEIGKGRILIEGSNVALLGYGSVVQNCHHAAKMLSAIGIDVTVADARFCKPLDTDLIKLLAKEHEI LITVEEGSIGGFGSHVSQYLSLAGILDGPLKWRAMMLPDRYIDHGSPQDQTEEAGLSSKQIAATVLSLMERPKEAILFK
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| TIGRFAM | 1 | 549 | 549 | 7.5E-192 | ||
| PANTHER | 1 | 559 | 559 | 0.0 | – | |
| PANTHER | 1 | 559 | 559 | 0.0 | ||
| Pfam | 1 | 202 | 202 | 7.5E-66 | ||
| CDD | 1 | 208 | 208 | 9.63097E-77 | ||
| SUPERFAMILY | 2 | 301 | 300 | 3.54E-53 | ||
| SUPERFAMILY | 216 | 400 | 185 | 3.46E-61 | ||
| Gene3D | 237 | 408 | 172 | 6.8E-66 | – | |
| Pfam | 239 | 400 | 162 | 9.0E-41 | ||
| SMART | 239 | 404 | 166 | 7.1E-68 | ||
| CDD | 245 | 398 | 154 | 6.9705E-72 | – | |
| ProSitePatterns | 345 | 361 | 17 | - | ||
| SUPERFAMILY | 413 | 549 | 137 | 1.23E-34 | ||
| Gene3D | 418 | 550 | 133 | 2.8E-35 | ||
| Pfam | 418 | 541 | 124 | 1.2E-31 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Catalytic activity | Catalysis of a biochemical reaction at physiological temperatures. In biologically catalyzed reactions, the reactants are known as substrates, and the catalysts are naturally occurring macromolecular substances known as enzymes. Enzymes possess specific binding sites for substrates, and are usually composed wholly or largely of protein, but RNA that has catalytic activity (ribozyme) is often also regarded as enzymatic. | ||
| Molecular function | 1-deoxy-D-xylulose-5-phosphate synthase activity | Catalysis of the reaction: D-glyceraldehyde 3-phosphate + H(+) + pyruvate = 1-deoxy-D-xylulose 5-phosphate + CO(2). | ||
| Biological process | Terpenoid biosynthetic process | The chemical reactions and pathways resulting in the formation of terpenoids, any member of a class of compounds characterized by an isoprenoid chemical structure. |
Expression pattern of LotjaGi4g1v0173200.3, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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