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| Field | Value |
|---|---|
| Gene ID | LotjaGi4g1v0173400 |
| Transcript ID | LotjaGi4g1v0173400.2 |
| Related isoforms 2 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | 1-deoxy-D-xylulose 5-phosphate synthase; TAIR: AT4G15560.1 Deoxyxylulose-5-phosphate synthase; Swiss-Prot: sp|Q6YU51|DXS2_ORYSJ Probable 1-deoxy-D-xylulose-5-phosphate synthase 2, chloroplastic; TrEMBL-Plants: tr|I1KX60|I1KX60_SOYBN Uncharacterized protein; Found in the gene: LotjaGi4g1v0173400 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:34751145..34755482) extracted from Lotus japonicus Gifu genome v1.2.
TTGGTGAATCACATCTACATATCACTTATGATCAATCTAACAATTTAACAAGACTACACACCATCTATGTTTATTTGACA TTCATGGTTTTCTAATTCCTTTTCATTAAAGTTCCTTTGTTTTTCTTTCATCATGGATCACTCTTCTAATTAATTCCTTT TCCTTGTAAATTAAAGACCATGTTTTTATTCACTGATAATACAATCTGTGACAGTTCTGTGTGAGAGCTTCAGTAAATAA TGCAGGCGATGGGGGAAGGACTATTATAAGAAAAGAGAACGATGAGTGGAAGATCGATTACGCTTGTGAGAAACCAGCAA CACCATTGTTGGATACAGTTAACGACCCGATTCACATTAAGAACTTATCCACACAGGTGAACCATTTAAAACGAGAAATC ATGTCTGAGATACCATGATCACAGCATGAGTTATTTTCTTATATTTTTTGTATGGCTTGTCTATATAGGATTAATGAATC AAGTATGTGTTTTTTAGGATCTTGAAAAACTTGCAGCAGAGCTAAGAGCAGATCTTGTACACACTCTGTCAAACATTGGT GGGCATCTTAGCTCAAGCTTGGGGGTGGTGGAATTAACAGTTGCTCTGCATTATGTTTTCAGCACCCCAGACGACAAGAT CCTTTGGGATGTTGGGCATCAGGTTAGTTTTTCTCCTATTATTTGTTGTCTAACTAAAAATTAATCAATAATGTTTGGTT TACACCAATTGGTGTAGACACCTAGTTGAGATAGAAAAAGAAAAATAATTAAAGGTGTATTAATTTTTTGTTATTTTGTT AGTGGTTCATGAATTGAGACTAAAATATTCATGATAGATTCCAATGGAGGGAATGTTGGTGTCAATCAGTTTGGATTCAT ACCATAAACTTCATAATACAAACCAACAAAAATAAAATTGATTGTGTTTATGTCAAATTAAAAAATAATAATTTTTACCT GTCTAAAAAATAGATTATTTTAGAGATTTTAAGAAAAATATAAGTTGATTGTGTTTGCTTGCACTAATTAAAACAAATTT TTTTATTTTGTCTCTATTTTATCATAATATATTTTTTTGATAAATTAATCAAAGTAGTTTTCTCAAATAATCTATTTTTC ACTTTTTTAAATAATAATTTTTTCAAAAGTTGCTCAACCAACATCTAAAAAGTTTTAAAAAATGATATTTTTTCATTAAA AAGTGAAATAAAAAAGCGAAAATAAACACACTCTTAATTGGTTTGAACCAAATTAGTTAATTTATCAAGTTTTCTTCCAA TTTTGTTGACACCTTTTGAGGTAAAAATATTGAGGTTATAGTTATAAAAATATTAATATTGACTCAGATTAATATCAAAT TTGGAATTGACTTGATTATTGTATTGAAATATTAAAAAAAATGAATTTTTTTTTTCTTGTAGTAGCATAGAATTTAATTG TTGAATTTAGGGTCGTGACATTAATTTGAACCAATGAAAAAAAAGGGTGTTAGAAAAAATGTTAAAGTGAGCATTATTAA CACTCCTTTACATGAAAGGAATTTCTGAAATAAAAAATAATTAAAAATGTTAATCAATACAACAATGAACGTAAATTTAT TTTTAACCCAATTTGACATAAAAAAAAAAAGGAAAAATTGCATAGGAGGGATTTTCATCCCTAGTTTTCCTTACATTCAT TTTGTTCAGTATTTGGTGGAGATCCATAATATAAAAAAATATAAAAAAAAAACCCTATTAGTTTGTTTATAAAAGCATTT AAAAAAACTTTCAAGTTGGAAGCTATACTATAGATAATGTATTTAGGCTTGTTAAATGCAAAACCAATCAATTACATTGA CAAAGTTTCTCTTGTAAAACAAGTTTCATATTTTCTCTGCTTCAATTTTTATATTTTTTAACTTTCCATTATGATCCAAA AAAAAACTTTTCATTATGAATTTATGATCAAATGTGGTGCCAATTGTAAGAGGGTCTAAGAAGAAGTCACAAAATGCAGG CATACGCCCACAAGATTCTTACAGGTAGAAGGTCACTAATGCACACCATTAAGATGACTTCAGGGCTAGCAGGTTTTCCT AAAAGGGATGAGAGCATTCATGATGCTTTTGGAGTAGGACATAGTTCTACAAGCATATCTGCTGGTCTTGGTGAGATTCT GGAATCTTAAGATCCATACTGTTTTCTAATCAGCTATATGTGAAGATGCATTTATTCACCCATTAAACCACATTTCTCAC TGCTCTATTGTTTTCTTCTTCAAAAAATAAATTTCTATAGGCATGGCAGTTGCACGTGATCTATTGGAAAAGAAGAACAA TGTAATTTCAGTGATTGGAGATGGAGCAATGACTGCTGGGTTAGCGTATGAGGCCATCAACAATGCAGGATTCCTTGATA CTAACTTGATAGTTGTACTTAATGACAACAAGCAAGTCTCTTTGCCAACTGCTACTCTCGACGGCCCTGCAACTCCAGTT GGAGCCCTTAGTAGGACTTTAAGCAAAATTCAAGCTAGCATAGAATTCCGCAAGATCAGAGATACTGCAAAAGTAAGTCC CCTGAACTTATATTTTTTAGCAAAAGTTTGATTAATCAAAGCCATGCTTTTCAATATAATTTAGCATTTGACACTAATTT CATCTGTTAAAGAACATAACCAAGCAAATAGGAGGACAAAAACACCAAGTTGCAGCAAAAGTTGATGAGTATGCAAGAGG TATGATTAGTGCTTCTGGTTCTACACTTTTTGAGGAGCTTGGATTATACTACATCGGCCCCGTGGATGGTCATAACATCG AAGATCTGGTCCTCATTTTTGAGAAAGTGAAAGCAATGCCTACACTAGGTCCTGTTTTGATTCATGTTGTGACAGAAAAA GGAAAGGGATACCCGCCAGCTGAAGCAGCAGCTGATAAAATGCATAGTGAGAAAGTTTACTTTTTATAATTTTTTTTCTC TTACAAATATCTTCGTGAAATATACTTAATGATACTTATACTTTCTCACACTTTCAGATGTTGCCAAGTTTGATCCAAAA ACAGGACGCCAGTTTAAGCCAAAATCGTCTACACTTTCATATAACCAGTACTTTGCTGAATCTCTGATCAAGGAAGCTGA AATTGACAAAAACATAGTTGCTATTCACGCAGCAATGGGAGGAGGGACTGGCCTGAATTATTTCCAGAAAAGGTTTCCTG AGCGTTGTTTCGATGTTGGGATAGCTGAACAACATGCTGTTACCTTTGCAGCTGGATTAGCTACTGAAGGTTTCAAACCT TTTTGTGCTATTAGTTCGTCATTCCTGCAGCGCGGATATGATCAGGTGAGCCAAATCATGAAATGAAATTTGGCCATATT GATCTATTATCTATGTCTGTGTACTTGTAACAGAACAATGGCATCACTAGTGTGATTAATCTTTGGTATATAGGTAGTCC ACGATGTTGATCTTCAAAAGCTACCTGTTCGATTTGCTGTGGATAGAGGTGGATTAGTTGGTGGGGATGGACCAACCCAC TGTGGAGCATTTGATATCACTTTCATGGCTTCTTTGCCCAACATGGTGGTTATGGCTCCATCTGATGAAGCTGAACTGAT GCATATGGTTGCAACCGCCGCAGCTATAGATGATAGACCAAGCTGCTTTAGATTCCCAAGGGGCAATGGAATTGGAGCCA GTCTTCCTCTCAATAACAAAGGAACTCCACTTGAGGTAAAGCATAAATATCTAACAGGCATTTTCACTAACATAATGCAA GCAAACTGAAATTTTCTTTGTTATGCAGATAGGAAAAGGAAGAATTCTGATAGAAGGTAGCCGAGTCGCTCTTTTGGGAT ACGGTTCCATGGTTCAACGATGTCTGCAAGCTGCAGAAATGCTTAAAACAATAGGTGTTTATGTGACAGTTGCTGATGCT AGGTTCTGCAAGCCATTAGATACTGATCTCATTCAACTACTAGCTAAAGAGCATGAAGTACTCATTACATTGGAAGAGGG TTCTATTGGAGGTTTTGCATCCCATGTTTCACAATTCTTAAGCATATCTGGTATCCTTGATGGACCTCTGAAGGTAAACC TTCCTCTATTTTGAAGTAACTCATTCCACAATTCCTTTGAAGGTATTATTATTATTCCTCTAAAGTAACTAACTTGTGGA GTTATACTGCCCTTTTGAAATTCACTTGCAGTGGAGACCAATGATGCTTCCTGATAAATATATTGAGCATGGATCTGCCC AATTTCAGAATGAAGAAGCAGGTCTTTCCTCAAAGCATGTTGCTGCTACAGTCTTGTCTCTTATAGGAAGGGCAAAAGAA GATCTTCTGCTCAATTAA
CDS sequence (LotjaGi4g1v0173400.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGCACACCATTAAGATGACTTCAGGGCTAGCAGGTTTTCCTAAAAGGGATGAGAGCATTCATGATGCTTTTGGAGTAGG ACATAGTTCTACAAGCATATCTGCTGGTCTTGGCATGGCAGTTGCACGTGATCTATTGGAAAAGAAGAACAATGTAATTT CAGTGATTGGAGATGGAGCAATGACTGCTGGGTTAGCGTATGAGGCCATCAACAATGCAGGATTCCTTGATACTAACTTG ATAGTTGTACTTAATGACAACAAGCAAGTCTCTTTGCCAACTGCTACTCTCGACGGCCCTGCAACTCCAGTTGGAGCCCT TAGTAGGACTTTAAGCAAAATTCAAGCTAGCATAGAATTCCGCAAGATCAGAGATACTGCAAAAAACATAACCAAGCAAA TAGGAGGACAAAAACACCAAGTTGCAGCAAAAGTTGATGAGTATGCAAGAGGTATGATTAGTGCTTCTGGTTCTACACTT TTTGAGGAGCTTGGATTATACTACATCGGCCCCGTGGATGGTCATAACATCGAAGATCTGGTCCTCATTTTTGAGAAAGT GAAAGCAATGCCTACACTAGGTCCTGTTTTGATTCATGTTGTGACAGAAAAAGGAAAGGGATACCCGCCAGCTGAAGCAG CAGCTGATAAAATGCATAATGTTGCCAAGTTTGATCCAAAAACAGGACGCCAGTTTAAGCCAAAATCGTCTACACTTTCA TATAACCAGTACTTTGCTGAATCTCTGATCAAGGAAGCTGAAATTGACAAAAACATAGTTGCTATTCACGCAGCAATGGG AGGAGGGACTGGCCTGAATTATTTCCAGAAAAGGTTTCCTGAGCGTTGTTTCGATGTTGGGATAGCTGAACAACATGCTG TTACCTTTGCAGCTGGATTAGCTACTGAAGGTTTCAAACCTTTTTGTGCTATTAGTTCGTCATTCCTGCAGCGCGGATAT GATCAGGTAGTCCACGATGTTGATCTTCAAAAGCTACCTGTTCGATTTGCTGTGGATAGAGGTGGATTAGTTGGTGGGGA TGGACCAACCCACTGTGGAGCATTTGATATCACTTTCATGGCTTCTTTGCCCAACATGGTGGTTATGGCTCCATCTGATG AAGCTGAACTGATGCATATGGTTGCAACCGCCGCAGCTATAGATGATAGACCAAGCTGCTTTAGATTCCCAAGGGGCAAT GGAATTGGAGCCAGTCTTCCTCTCAATAACAAAGGAACTCCACTTGAGATAGGAAAAGGAAGAATTCTGATAGAAGGTAG CCGAGTCGCTCTTTTGGGATACGGTTCCATGGTTCAACGATGTCTGCAAGCTGCAGAAATGCTTAAAACAATAGGTGTTT ATGTGACAGTTGCTGATGCTAGGTTCTGCAAGCCATTAGATACTGATCTCATTCAACTACTAGCTAAAGAGCATGAAGTA CTCATTACATTGGAAGAGGGTTCTATTGGAGGTTTTGCATCCCATGTTTCACAATTCTTAAGCATATCTGGTATCCTTGA TGGACCTCTGAAGTGGAGACCAATGATGCTTCCTGATAAATATATTGAGCATGGATCTGCCCAATTTCAGAATGAAGAAG CAGGTCTTTCCTCAAAGCATGTTGCTGCTACAGTCTTGTCTCTTATAGGAAGGGCAAAAGAAGATCTTCTGCTCAATTAA
Protein sequence (LotjaGi4g1v0173400.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MHTIKMTSGLAGFPKRDESIHDAFGVGHSSTSISAGLGMAVARDLLEKKNNVISVIGDGAMTAGLAYEAINNAGFLDTNL IVVLNDNKQVSLPTATLDGPATPVGALSRTLSKIQASIEFRKIRDTAKNITKQIGGQKHQVAAKVDEYARGMISASGSTL FEELGLYYIGPVDGHNIEDLVLIFEKVKAMPTLGPVLIHVVTEKGKGYPPAEAAADKMHNVAKFDPKTGRQFKPKSSTLS YNQYFAESLIKEAEIDKNIVAIHAAMGGGTGLNYFQKRFPERCFDVGIAEQHAVTFAAGLATEGFKPFCAISSSFLQRGY DQVVHDVDLQKLPVRFAVDRGGLVGGDGPTHCGAFDITFMASLPNMVVMAPSDEAELMHMVATAAAIDDRPSCFRFPRGN GIGASLPLNNKGTPLEIGKGRILIEGSRVALLGYGSMVQRCLQAAEMLKTIGVYVTVADARFCKPLDTDLIQLLAKEHEV LITLEEGSIGGFASHVSQFLSISGILDGPLKWRPMMLPDKYIEHGSAQFQNEEAGLSSKHVAATVLSLIGRAKEDLLLN
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| TIGRFAM | 1 | 548 | 548 | 2.9E-185 | ||
| PANTHER | 1 | 558 | 558 | 0.0 | – | |
| PANTHER | 1 | 558 | 558 | 0.0 | ||
| Pfam | 1 | 202 | 202 | 4.9E-64 | ||
| SUPERFAMILY | 6 | 301 | 296 | 1.18E-49 | ||
| SUPERFAMILY | 211 | 400 | 190 | 4.42E-59 | ||
| Gene3D | 236 | 407 | 172 | 9.7E-65 | – | |
| SMART | 239 | 404 | 166 | 4.1E-65 | ||
| Pfam | 239 | 400 | 162 | 7.9E-40 | ||
| CDD | 245 | 398 | 154 | 6.07846E-71 | – | |
| ProSitePatterns | 345 | 361 | 17 | - | ||
| SUPERFAMILY | 413 | 549 | 137 | 4.84E-33 | ||
| Gene3D | 418 | 550 | 133 | 1.5E-33 | ||
| Pfam | 418 | 541 | 124 | 1.6E-29 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Catalytic activity | Catalysis of a biochemical reaction at physiological temperatures. In biologically catalyzed reactions, the reactants are known as substrates, and the catalysts are naturally occurring macromolecular substances known as enzymes. Enzymes possess specific binding sites for substrates, and are usually composed wholly or largely of protein, but RNA that has catalytic activity (ribozyme) is often also regarded as enzymatic. | ||
| Molecular function | 1-deoxy-D-xylulose-5-phosphate synthase activity | Catalysis of the reaction: D-glyceraldehyde 3-phosphate + H(+) + pyruvate = 1-deoxy-D-xylulose 5-phosphate + CO(2). | ||
| Biological process | Terpenoid biosynthetic process | The chemical reactions and pathways resulting in the formation of terpenoids, any member of a class of compounds characterized by an isoprenoid chemical structure. |
Expression pattern of LotjaGi4g1v0173400.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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