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Field | Value |
---|---|
Gene ID | LotjaGi4g1v0174000 |
Transcript ID | LotjaGi4g1v0174000.1 |
Lotus japonicus genome version | Gifu v1.2 |
Description | Tetratricopeptide repeat (TPR)-like superfamily protein, putative; TAIR: AT5G65520.1 Tetratricopeptide repeat (TPR)-like superfamily protein; Swiss-Prot: sp|Q8WZ42|TITIN_HUMAN Titin; TrEMBL-Plants: tr|A0A151TGS0|A0A151TGS0_CAJCA Uncharacterized protein; Found in the gene: LotjaGi4g1v0174000 |
Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:34917680..34919122) extracted from Lotus japonicus Gifu genome v1.2.
TGAAGGGTCAGGGTTCGAATCCTGGTGAAGGAACTAATTTACTAACAATTAACAACTAACATTGGCCTATAAAAAAAAAC TTATATTTTAATTTCAGAAATGATGAATATATTATATATCCACATGTCACAGCTATTGTTTACTTTCAGACAGGACTCCC ATTAAAATGACAAAGCAAACCGCAAAGCTAGGGAAGTTGCTTGGCAACTCATAACAACATGACTGCAGAGGCTATGTTAC AATTTGGCATCTTAATCCTAACCTTATCACTATTCTTCGTCATGTACACTCTCCGCAACCAAATAACCCAGCCGAGAATC CGAACCCGCAACAAGACCCGTCAACCCGACCCAAACCGCCACCTGGTCCAAGCAACGCGTCACCTAGCTCGAGCCAGATC CACCACCGCCACACACCGAGCCCAACACGCAAGAACCGCTCTCGTTGAAGCCGACCGAGCTCTCTCCATCTCACCCAGGG ACCCCTCCGCCCACATCCTCCGAGCCCGAGCGCTCATCCTCATGGGTCGCCGCGCCGCCGCTATCAGATCCCTCGATTTC GCCCTCTCTCCGCCGGCGGCTAAGTCGCTTTCCGCGGCGGAGCGCGCGGATGCTCTTGTTGAGAGGGCGGAGGTGAAAAT GGCTGTGAATATGCGGCGGCGAGTTGACTCGGCGATGGCGGATCTAAAAGAGGCAATGGGACTGAGTCGAGGGATGAGTG TGAGTACTAGTAACTCGGTGGGGATGTGTTTGTTGGGGAAGTGTTGTGAGTGGAAAGGGATGAAGGGTGAGGCTGAAGAT GCTTTCCGGGAGGCTCTTGATGTTGATCCTGATTCAGTTGAGGCTCGTAATGGGTTGGATCGGTTAGGCCCATGAAGTTT TCCTTTTTTGGTAAAAAATTGTTTTGGTAATTTCGAACCGGATAAAACCATTAGTTGATGTAGATGATAATATTCTAGTA ATTCTACCTACTATTTATAGACTTGAACGCGAGACATCTGCTTAAACTAAATCAATTCGTGTTAGTTGATCTACATGCTT AGCGGCAGGGGCGGATTCACCGCCGGCAAGCTTGGGCCTATGCCCAGGCTCTGGCCGAAAAAATAAATTTTTTCTTTAGA CCAGATTATCTTTGGGGCCCAAAATAAGAAAAGAAAAGGGTAAAATTTGAAGGTGAGGCGTGGGTGTGGCTGACAGGCTC AGTGCGTGAGGCGGTGGCGATGGGTGAGTGAGGACGGTGTGGGTGAGGCGGATATGTGAGTGAAGCGTGGGTGAGATTCT GCTTGAGGATCTAAACCAACTGTGACTCCCACCTTCATCGTGTTGTCCAGAACGCAGCAAGGCAAATACATAAGAAACAT GGTTGTGCGACACATGAGCATGAGAATAGGAAGAAGACAACTTAAAAACTAGGGTTTCTTTGGTCAATTGGGTCAAGGCC AAT
CDS sequence (LotjaGi4g1v0174000.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGACTGCAGAGGCTATGTTACAATTTGGCATCTTAATCCTAACCTTATCACTATTCTTCGTCATGTACACTCTCCGCAA CCAAATAACCCAGCCGAGAATCCGAACCCGCAACAAGACCCGTCAACCCGACCCAAACCGCCACCTGGTCCAAGCAACGC GTCACCTAGCTCGAGCCAGATCCACCACCGCCACACACCGAGCCCAACACGCAAGAACCGCTCTCGTTGAAGCCGACCGA GCTCTCTCCATCTCACCCAGGGACCCCTCCGCCCACATCCTCCGAGCCCGAGCGCTCATCCTCATGGGTCGCCGCGCCGC CGCTATCAGATCCCTCGATTTCGCCCTCTCTCCGCCGGCGGCTAAGTCGCTTTCCGCGGCGGAGCGCGCGGATGCTCTTG TTGAGAGGGCGGAGGTGAAAATGGCTGTGAATATGCGGCGGCGAGTTGACTCGGCGATGGCGGATCTAAAAGAGGCAATG GGACTGAGTCGAGGGATGAGTGTGAGTACTAGTAACTCGGTGGGGATGTGTTTGTTGGGGAAGTGTTGTGAGTGGAAAGG GATGAAGGGTGAGGCTGAAGATGCTTTCCGGGAGGCTCTTGATGTTGATCCTGATTCAGTTGAGGCTCGTAATGGGTTGG ATCGGTTAGGCCCATGA
Protein sequence (LotjaGi4g1v0174000.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MTAEAMLQFGILILTLSLFFVMYTLRNQITQPRIRTRNKTRQPDPNRHLVQATRHLARARSTTATHRAQHARTALVEADR ALSISPRDPSAHILRARALILMGRRAAAIRSLDFALSPPAAKSLSAAERADALVERAEVKMAVNMRRRVDSAMADLKEAM GLSRGMSVSTSNSVGMCLLGKCCEWKGMKGEAEDAFREALDVDPDSVEARNGLDRLGP
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
---|---|---|---|---|---|---|
Phobius | 1 | 5 | 5 | - | – | |
TMHMM | 5 | 27 | 23 | - | – | |
Phobius | 6 | 25 | 20 | - | – | |
PANTHER | 9 | 218 | 210 | 5.8E-79 | – | |
PANTHER | 9 | 218 | 210 | 5.8E-79 | – | |
Phobius | 26 | 218 | 193 | - | – | |
Gene3D | 35 | 216 | 182 | 2.4E-16 | ||
SUPERFAMILY | 70 | 209 | 140 | 2.09E-13 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
GO term | Namespace | Name | Definition | Relationships |
---|---|---|---|---|
Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of LotjaGi4g1v0174000.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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