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LotjaGi4g1v0176800.3

Overview

Field Value
Gene ID LotjaGi4g1v0176800
Transcript ID LotjaGi4g1v0176800.3
Related isoforms 4
Lotus japonicus genome version Gifu v1.2
Description Serine/threonine-protein phosphatase; TAIR: AT1G69960.1 serine/threonine protein phosphatase 2A; Swiss-Prot: sp|O04951|PP2A5_ARATH Serine/threonine-protein phosphatase PP2A-5 catalytic subunit; TrEMBL-Plants: tr|A0A1J7HCH3|A0A1J7HCH3_LUPAN Uncharacterized protein; Found in the gene: LotjaGi4g1v0176800
Working Lj name n.a.

Sequence information

Genomic sequence (LjG1.1_chr4:35937966..35938551) extracted from Lotus japonicus Gifu genome v1.2.

ATTGAATGCCACTCCTTAACATTTGTACTGTCAATACAGTTTATGAGGTTAATTGGGTGCGAGGGATTTGTTGCACCTAT GTTGCCTAACAATCGTACTTGTGCATTACAGGTTCCGCATGAAGGACCGATGTGTGATCTCTTGTGGTCTGATCCTGATG ATCGGTGTGGGTGGGGAATATCTCCACGTGGTGCTGGATACACATTTGGACAGGATATAGCTGCTCAGTTCAATCATACC AATGGTCTCTCTCTGATATCTAGAGCTCACCAGCTTGTTATGGAAGGATACAATTGGTGCCAGGTGACTGACAAATATAT TTAACGACTATAATTATCATTTTCTGCATTGGGAGTACCTTTGGATTATATATAATGTATTATGTATTGACTTATGCTGA TTACTCTATTAGGAGAAGAATGTGGTGACTGTATTTAGTGCTCCAAATTACTGTTACCGATGTGGGAATATGGCTGCCAT ACTGGAAATTGGAGAGAATATGGATCAGAATTTTCTTCAGTTTGATCCTGCTCCCAGGCAAATTGAGCCTGACACTACGC GCAAGACCCCAGATTATTTTTTGTAA
Download Genomic Sequence

CDS sequence (LotjaGi4g1v0176800.3) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGAGGTTAATTGGGTGCGAGGGATTTGTTGCACCTATGTTGCCTAACAATCGTACTTGTGCATTACAGGTTCCGCATGA AGGACCGATGTGTGATCTCTTGTGGTCTGATCCTGATGATCGGTGTGGGTGGGGAATATCTCCACGTGGTGCTGGATACA CATTTGGACAGGATATAGCTGCTCAGTTCAATCATACCAATGGTCTCTCTCTGATATCTAGAGCTCACCAGCTTGTTATG GAAGGATACAATTGGTGCCAGGAGAAGAATGTGGTGACTGTATTTAGTGCTCCAAATTACTGTTACCGATGTGGGAATAT GGCTGCCATACTGGAAATTGGAGAGAATATGGATCAGAATTTTCTTCAGTTTGATCCTGCTCCCAGGCAAATTGAGCCTG ACACTACGCGCAAGACCCCAGATTATTTTTTGTAA
Download CDS Sequence

Protein sequence (LotjaGi4g1v0176800.3) extracted from Lotus japonicus Gifu v1.2 Proteins.

MRLIGCEGFVAPMLPNNRTCALQVPHEGPMCDLLWSDPDDRCGWGISPRGAGYTFGQDIAAQFNHTNGLSLISRAHQLVM EGYNWCQEKNVVTVFSAPNYCYRCGNMAAILEIGENMDQNFLQFDPAPRQIEPDTTRKTPDYFL
Download Protein Sequence

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
SMART
SM00156
1 128 128 6.9E-10
IPR006186
Gene3D
G3DSA:3.60.21.10
9 144 136 2.5E-44
IPR029052
PRINTS
PR00114
12 39 28 1.9E-21
IPR006186
SUPERFAMILY
SSF56300
21 131 111 1.08E-41 –
PANTHER
PTHR45619
23 144 122 1.8E-87 –
PANTHER
PTHR45619:SF32
23 144 122 1.8E-87 –
PRINTS
PR00114
68 88 21 1.9E-21
IPR006186
PRINTS
PR00114
90 106 17 1.9E-21
IPR006186

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0016787
Molecular function Hydrolase activity Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3.
Subterm of

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Expression data

Expression pattern

Expression pattern of LotjaGi4g1v0176800.3, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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