Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message
| Field | Value |
|---|---|
| Gene ID | LotjaGi4g1v0177200 |
| Transcript ID | LotjaGi4g1v0177200.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Myb transcription factor; TAIR: AT5G58850.1 myb domain protein 119; Swiss-Prot: sp|Q9S7L2|MYB98_ARATH Transcription factor MYB98; TrEMBL-Plants: tr|A0A151U0N9|A0A151U0N9_CAJCA Transcription factor MYB98; Found in the gene: LotjaGi4g1v0177200 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:36119142..36120693) extracted from Lotus japonicus Gifu genome v1.2.
TTGACAGTAAATTTGTTTATTTAGGAAGCTATCTATATAATTGATTCCCTGCAAATTTGTTCATTCACTAATTTGTATAT ACTCTCGTTTCATGTAAGTTAGGGTAAGAGGAGGAAGTGATGGTGTTAACATGAAAAAATGAAGGAGAGAAAATTTCCCA TGGATCAATCAGCCATAGATATGTTCTTATGGAACCAACATAGCTCTTTCTCTCACCAGCCACTAGTAGAGAATAACATA GCAAGGAGCAACAATGTTGCAAGTGTTTTTGGTGAGGAGTTCTCCAATTTTCCTTTTTCTGGCGGTTCGACCCAAGGGCT TCTCTGGCCCAACACTCAAGAGTCATGCTTTGTTGATGAGTTTTTGCCAAAGGAAGAGCCTTTGGAGTGCACAAGCATCA ACCAAAACCCCATGTTGTGTATGACAGTCATGGATGTTACACCCATCAATGGGAAAGGGGTTGGAAGAAGGAGTACTAAG AAAGAGTCTTCTATGCCTTTGATCAAAGGACAGTGGACCTATGAAGAAGACATGAAATTGATTAGTTTGGTGAATCAATA TGGGGAAACAAAATGGGGTAAAATAGGTGATATGTTAGAAGGAAGGGCTGGCAAGCAATGTCGCGAGAGATGGTATAATC ATTTGCGCCCTGACATTAAGAAAGGTAGTTGGAGTGAAGAAGAAGAGAAGGTCCTTGTAGCTACCCATGCCAAGATGGGA AACCGTTGGGCTGATATAGCAAACCTTATTCCAGGAAGAACCGAGAACGGCGTAAAGAACCACTGGAATGCAACTAAGAG GAGGCTAAATTCAAACAGAAAGAACAAGAAAGCTGCACAGAGCTCTAATGGAAAACCACACTCTTCCATACTTGAAGACT ATATCAGAAGCAAGACTCTCACTTGCACCAATCCCACAACTTCTCCCATGTCCTCTGTCTCGAACAGAGCACTACTACTC TTTGAAGACCTTTCATCAAACAGTTACGATGCAAACCTTGAATTCCTAGATCCCTCTGATTCTATTGACACTGAGGTACT CTTCATGCAAAAGATGTTCAAAGAGAATCAGAATCAGGAATCATTTTTCAATGTTGAAGCTTCTAATCTTAACAAGATGA CTTCAACCTCTCACTTGGCCTTTTGTCAAACAGATGGTGTTCATGATGTGACACAGTGTGGCTTTGTTTACCCCTTCCAA TATCCAGATAACATGCACTTGGGTGATAATAATTTCCTTCATAGAGAGACTGTTACCCAGCCTATGAACTACCTCCCTTC AGATCTTTATGGCTCTCCCTTGTTCAATCTGTAGCAGCCTTTGGATCACTTTACTCAGCAAGGTTTTAAATTTCCGCCCG CAACTGCAGTTGCTTGGAGTTTCCGCAACGGCATCGCAACCACAATGGTAAAACCTTCTGTTTGGATAATTTTTTTTGAA ATGACTTTTAATTTGGATATTGTTTTTTTTTTTGAAATAATTTGGATATTGTTAAGTAGGAACTTTGTGTTTTTTTTTCC TAAGCAAGGAGCTTTGTTAGTTTTGTTTTGGG
CDS sequence (LotjaGi4g1v0177200.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGAAGGAGAGAAAATTTCCCATGGATCAATCAGCCATAGATATGTTCTTATGGAACCAACATAGCTCTTTCTCTCACCA GCCACTAGTAGAGAATAACATAGCAAGGAGCAACAATGTTGCAAGTGTTTTTGGTGAGGAGTTCTCCAATTTTCCTTTTT CTGGCGGTTCGACCCAAGGGCTTCTCTGGCCCAACACTCAAGAGTCATGCTTTGTTGATGAGTTTTTGCCAAAGGAAGAG CCTTTGGAGTGCACAAGCATCAACCAAAACCCCATGTTGTGTATGACAGTCATGGATGTTACACCCATCAATGGGAAAGG GGTTGGAAGAAGGAGTACTAAGAAAGAGTCTTCTATGCCTTTGATCAAAGGACAGTGGACCTATGAAGAAGACATGAAAT TGATTAGTTTGGTGAATCAATATGGGGAAACAAAATGGGGTAAAATAGGTGATATGTTAGAAGGAAGGGCTGGCAAGCAA TGTCGCGAGAGATGGTATAATCATTTGCGCCCTGACATTAAGAAAGGTAGTTGGAGTGAAGAAGAAGAGAAGGTCCTTGT AGCTACCCATGCCAAGATGGGAAACCGTTGGGCTGATATAGCAAACCTTATTCCAGGAAGAACCGAGAACGGCGTAAAGA ACCACTGGAATGCAACTAAGAGGAGGCTAAATTCAAACAGAAAGAACAAGAAAGCTGCACAGAGCTCTAATGGAAAACCA CACTCTTCCATACTTGAAGACTATATCAGAAGCAAGACTCTCACTTGCACCAATCCCACAACTTCTCCCATGTCCTCTGT CTCGAACAGAGCACTACTACTCTTTGAAGACCTTTCATCAAACAGTTACGATGCAAACCTTGAATTCCTAGATCCCTCTG ATTCTATTGACACTGAGGTACTCTTCATGCAAAAGATGTTCAAAGAGAATCAGAATCAGGAATCATTTTTCAATGTTGAA GCTTCTAATCTTAACAAGATGACTTCAACCTCTCACTTGGCCTTTTGTCAAACAGATGGTGTTCATGATGTGACACAGTG TGGCTTTGTTTACCCCTTCCAATATCCAGATAACATGCACTTGGGTGATAATAATTTCCTTCATAGAGAGACTGTTACCC AGCCTATGAACTACCTCCCTTCAGATCTTTATGGCTCTCCCTTGTTCAATCTGTAG
Protein sequence (LotjaGi4g1v0177200.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MKERKFPMDQSAIDMFLWNQHSSFSHQPLVENNIARSNNVASVFGEEFSNFPFSGGSTQGLLWPNTQESCFVDEFLPKEE PLECTSINQNPMLCMTVMDVTPINGKGVGRRSTKKESSMPLIKGQWTYEEDMKLISLVNQYGETKWGKIGDMLEGRAGKQ CRERWYNHLRPDIKKGSWSEEEEKVLVATHAKMGNRWADIANLIPGRTENGVKNHWNATKRRLNSNRKNKKAAQSSNGKP HSSILEDYIRSKTLTCTNPTTSPMSSVSNRALLLFEDLSSNSYDANLEFLDPSDSIDTEVLFMQKMFKENQNQESFFNVE ASNLNKMTSTSHLAFCQTDGVHDVTQCGFVYPFQYPDNMHLGDNNFLHRETVTQPMNYLPSDLYGSPLFNL
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 83 | 386 | 304 | 9.6E-100 | ||
| PANTHER | 83 | 386 | 304 | 9.6E-100 | – | |
| ProSiteProfiles | 118 | 169 | 52 | 16.903 | ||
| SUPERFAMILY | 120 | 216 | 97 | 7.49E-29 | ||
| Gene3D | 121 | 175 | 55 | 4.2E-22 | – | |
| SMART | 122 | 171 | 50 | 4.1E-14 | ||
| Pfam | 126 | 184 | 59 | 2.0E-17 | – | |
| CDD | 126 | 169 | 44 | 9.00905E-14 | ||
| ProSiteProfiles | 170 | 224 | 55 | 23.515 | ||
| SMART | 174 | 222 | 49 | 2.9E-13 | ||
| Gene3D | 176 | 244 | 69 | 1.2E-16 | – | |
| CDD | 177 | 220 | 44 | 4.34872E-10 | ||
| MobiDBLite | 218 | 244 | 27 | - | – | |
| MobiDBLite | 229 | 244 | 16 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | DNA binding | Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid). |
Expression pattern of LotjaGi4g1v0177200.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
Loading expression data from ljgea-geneid. Please wait…