Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message
| Field | Value |
|---|---|
| Gene ID | LotjaGi4g1v0183700 |
| Transcript ID | LotjaGi4g1v0183700.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Nitrate transporter NRT1-2; TAIR: AT1G69870.1 nitrate transporter 1.7; Swiss-Prot: sp|Q8RX77|PTR21_ARATH Protein NRT1/ PTR FAMILY 2.13; TrEMBL-Plants: tr|I1N195|I1N195_SOYBN Uncharacterized protein; Found in the gene: LotjaGi4g1v0183700 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:39458889..39464176) extracted from Lotus japonicus Gifu genome v1.2.
CCACATGTCCAGTGTCTCTTTCTACGCGGATATTCAGGCATCCCAATTTTATGATGGCCATAAATCCTTAGTCGACTCTC CATTCATTCATTCATTCATTCCATATTTTTTTGTGCACATAAATATGCATGGGACTAAGCCATCTTGTTCCTTAGCTCTC AAAACCCGACCAACGCCTTAACATGAGTCCACAAAGTCAGAGATATTATTAATACAAAAACCACTGCGACCACATTAGTT TCTCAAGTGAAAGTGAGAAGATAATGGCTTCAAAGGAAAATAAGGCTAAGAAAAATCCTCATTCCAGCCCAAAGAAACAA CCAGGAGGATGGAAGGCCATGCCCTATATTTTAGGTCAGTTTTATATTCTAACCATCTTTAATTTCTTCTGGTCCGCAAA ATCTCCACATTTTTTATCAACGGGTTGTTCGTTCAAGAGGTATATATATATGTGTAATTTTCTTTAAACAAAGTCTCGGG TTTAAGCAGTTTTATGGATGAAAAAAATCTATGTTCAAAGAATTAGCTTCACCATAATATAAAATATTCTCTTTTCAAAC AGCAGTATTGCCTCCAAGTAGATGATACTTGTAAATTCTAAAAATCATGACATTTTTCTTTCACAAAATTAAGAAAGAAA AAATTTAATTTATTTGTTGTTTGATGTTTTTGCAGCGAATGAAACATTTCAGAGATTGGCAATTTTTGGGTTGGTTGCTA ACTTTATGGTGTATTTAACAAGAGAGCTTCACTTGGAGCAAGTATATGCTGCTACCATTGTGAACGCATGGTTTGGGTTT TCAAACTTTGGCCCCCTACTGGGTGCCTTCATTTCTGACGCTTATGTCGGTCGCTTCAGGACTATAGCTTTTGGTTCAGT CGTTTGTCTTCTGGTAAGGACTTATTTATCTCTATCCCTGCCCAGCCTGTCAAAACTTTTGTGGTTAGCAGATTTTTAGG ATAGAAGAACATGTTATTTTTTTCTTCTCTCACAAATGTAAATACACATTTGGGAAACTATCCTAGAGTTTGAACTTGTG TGATTTCATTATAAATATCTATACCTTACCTAGCTATCATTAGCCTTTGTTGGTATAGAACATGTGATAATTAACTAGCT ACTTGATTATTTTTGTCGGTTTTGATAAGTGAAGGACAAAGATATGTTTGTCAGGCAAGTTGATAATTTCAATCAATTAC TACTAAATACTTTCTCGGTCCATTATTTATAGTCACTATTTTTATTTTTTTTCTAAAAAACATATGTCAATTTTTCGATG TTACCAAAGCTATTCCATAACGTATGTTGATGAGACTAATTCTCACCTCATTGTCACTCTACTAAACGGTAGAAAAATGA ATCACCACACCAACACACTTCATTAAATATTAATCATTTTATAATATATATCAAGATATAAAATGTGAAGAGATCTGGGC TTTAAGCCCTCCACATTAGAAAAAAAAAATGTAAAGAGATCTAATAGTAGCAAGAAAAGGTATACACATTTACTTCAAAT TTGTAGCCAGATTGAAGTCAACAAGCTAAATACTCCAAGACCCTCTTTGCTAGTTTTTTGTTGCTAACACTACAAGAAAA CAGTGATGTAGTGACCCCCACTAAATGGGTAAAAGTTGTAAGAAGTGATTACAACCCTCATTATCTTCTTACATTTTGTG AGGTTTCTTTTTATTCCTAAGTATAAGTTTGTGATTCAAATAGTATGAAATTAAAAAGATAATGATATTTTAAAAATTTA TTAACTTGGATATATAATTTTTTTTATGGAAAATGAAATGACGAATAATTAAAGTAGAGAGAGAGAAAGTCCCCAAAAGA TAGCTCAAATGGTAAGAGTTGAGACATATGAGTTGAGGAGGACAAGGTTCAGAAGTCAATCCTTCGATGATGTAATTTGT CTTTCCGTTGTACCAAAAAAATTAATTTAAAAAGGACTTTATCGGGAAAATAATAATTTATGAAGGTTAATACAATTTTT TTAGAAAGGTGTTACTACTTTTTTAAATTCTAGTTTAAGGTGGTATAATAATACATGTAGTAATACTCAGAGATATAAAT TGTGCAAACCTAACCGACACCTCATTTTTCTTTTTACCTATCTTTTATCCTATATTATATAAACAAAGGGTTAACGATGA AAGAAGTGACTCGTATAATTACTTGTGGTTGACTTTTAAGACTTGGGTTACCTCTCTTCTTTGGTTACCATAATAATTAT CCACTACCTTCAAGTATTCTACAAAACTTCTCTTTTTACCAGTATTCTATAAGAATTCTATTTTTACAAGTTTTCTTTTA ATAAATCTATTTCATGTTTAACAACCTTCACAAAGAATAAAGAGAGGTTTCGACTTAAGTTCTCCTTGAGAGGTAGTAGT AGATAATGTATGCTCTAAGCACTCTTGTGTTTTGACTAGATGTTTTGGCCCAAATACTACTCATGGAGCTAGGGTCAGTC TTGGGCCTGTGCAAGCAGACCCACAGTCCAAGGCCCCCAAAAAGAAGGGTCTCCAAAAAAAATTCGAATTTTTTTTACAG CAGTTATCCTTTAAGAACCGCTGCTGTAAATAATCTATCTTTTACAGCGGTTCGGACCGCTGTATAGTCTTTTACAGCGG CGAGCTCTACAGCGGGTCCGAACCGCTGTAAAAGGCCAAATTTAACCGCTGTAAAAGACATTTTTTGGCGTAGTGTTCTC ATTAAACTTTCTCCAAAAAAATTTAGGGGTCCATTTTTATTATTTACCCAGGGCCTCCAAAATGTCGGGACCGGCCTTGC ATGGAGCTTTAACAATTGCTTGAATGAAAGAATAGATGACTTAGAAAAGATAGCATGTATGAAAACTTGAATTGAGCTAA CAGTCAAAGTAACTGGTCAATATCCAATTAACTGACAGAACACTTTGTGCTGATCACTTTGATCAGTCACTCCCTCACCC AAAAGTGGAGAGGGATTTGGATGTTGAAGAAATTGTTTTCCTATATATTTATTGAGTATATGTTAGACAAAGATCCTTCT AATTAAGTTTTGTGTTGAATATACATTTGTTAAACAGGGGATGATGGTGGTGACTTTAACATCCTGGATGACGCCTCCAC CTTGTACTCCTGAGCAACTAACACTGGGACAGTGTGTCAGAGCAAGCAATTCTCAAATGGCTGTGCTGTTTACAGGGCTT GGCATTCTAAGCATTGGTTCAGCTGGAGTGGCCCCTTGCAGCATTCCCTTTGGTGTTGACCAATTTGACCCAACCACAGA TGAAGGGAAGAAAGGGATTAACAGCTTCTTCAATTGGTACTACGCCACATTCACCTTGGTATTAATTCTCACTCAGACAG CCGTGATCTATATACAAGACTCCGTGAGCTGGAAGTTAGGGTTTGGGATCCCAACTCTGTGCATGTTCTTGTCAATAATC TTCTTCTTTGTTGGAACGAGGGTCTACGTGTATGTGAAGGCTGAAGGAAGTGTTTTTTCTGGTGTGGCCCAAGTTTTTGT GGCTGCATACAAAAAGAGAAAAGTCAAGTATCCAAGTCAGGAAGAGATTAATGATGGAGTTTTCTTTGATTCCCCATTTT GTGGGACTGCTGTTTCGTCAAAACTCCCTATGACCAAACAATACAGGTAAGATATTTCTACCATTGAATGATTGAACAAT ATTGTTGGTGGGCTGCACAAAGATAAATCATGAAAAATCTATATATCTTCTACACCTATAGTTATGCCTATGCTGGACAA AGAAAAATCTAGTTTACAAGTTTCAGATATGATTTATGTGTGAATTAAATATTAAAGTTGTTCTAAAAATGATACTCAAA CACTCAAATAGTACCTAACAAGTGTCTAAGGATCCCCTTTATTATTTGATGAATCAGAGAGAAGCTATGATGTCACTTGA CCATCTCTCCATCGTCGATTTTTGCTTATCTTCTCGGTGTCCAAATGCAATTGTGTTTATGTTGTTTTTTTTTTCTCCAT TATAGAAGTGTCTTTCTTCAATAAATAAATTATTTTTAAAGAAAGATTATCGAAATACAATAAAGATTGATGTACTTTAA TTTTATCGGAATGATCTGAAAGCTTACGAATTAGCTTACCCTCTTGGCATGTAATTCTAATTTCTAAGTACATAAGCTGA TATATTTTTCAATATATATATACATATATATATATATATATACATATATATATATATATATATATATATATATATATATA TATATAGGGTGTTGAACAAAGCTGCTATAGTAATGGAGGGTGAGCTAAATCCAGATGGAAGTAGAGTAAACAAATGGGAA CTTGTGAGCATCCAGCAAGTTGAAGAAATCAAATGCATAGCTAGGATCATCCCAGTATGGGCTGCAGGTATCCTCAGTCT CACTTCCATGTCCCAACAAGGAACATTCACCGTCTCACAAGCCTTGAAAATGGAAAGACACCTTGGACCCAATTTCCAAA TCCCAGCTGGTTCACTCGGAGTCATATCACTACTCACCATTGCTTTATGGATCCCACTCTATGACCGGTTCCTAGTACCA GCACTGAGAAAAAAAACCAAGCATGAAGGTGGCATCAGTCTCCTCCTAAGAATGGGAATTGGCATGGTGTTCTCTGTTCT ATCAATGGTTGTGGCTGGCTCGGTTGAAAAAGTAAGAAGGGATTCAGCAGTTTCAAATTCAAATGCTCCAATCTCAGTTT TCTGGCTTGCTCCTCAGTTGATCCTTATGGGTTTCTTTGAGGCCTTCAATATAATTGCCCAAATTGAGTTTTTTAACCGG CAATTTCCCGAGCACATGAGAAGCATTGGTAATTCCTTGGTATCATTATCTTTTGGTGTGTCGAGCTACGTGAGCAGCAT TATAATCAACACAGTTCATCATACTACTGGAACACATGACCACCAAGATTGGTTGACGAATGATATAAACGCTGGCAGAG TAGACTACTTTTATTACCTCATAGCCGGGATAACCACCCTTAACTTGATTTATTTTATATATGTCGCAAGAGGATATCAA TACAAGGGGAGTGTGCAGGTTGACCTCCATGACCATGATGATGTGGAGTTAGGATCACTCAAAGGCTAGCTAGCAAGTAG CAATATCTTACTATACTAGATTATATCCCGTGCGATGCAATGCACGAAGAAGCGACTCTACTATTTGTTAAAATTAATTA ATCAATTTACATATTATACTTTTTATTTCGTTTTTTTTATTTTAATATTCATGTGTATTAGACACATATATACATATATA TACCGAAC
CDS sequence (LotjaGi4g1v0183700.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCTTCAAAGGAAAATAAGGCTAAGAAAAATCCTCATTCCAGCCCAAAGAAACAACCAGGAGGATGGAAGGCCATGCC CTATATTTTAGCGAATGAAACATTTCAGAGATTGGCAATTTTTGGGTTGGTTGCTAACTTTATGGTGTATTTAACAAGAG AGCTTCACTTGGAGCAAGTATATGCTGCTACCATTGTGAACGCATGGTTTGGGTTTTCAAACTTTGGCCCCCTACTGGGT GCCTTCATTTCTGACGCTTATGTCGGTCGCTTCAGGACTATAGCTTTTGGTTCAGTCGTTTGTCTTCTGGGGATGATGGT GGTGACTTTAACATCCTGGATGACGCCTCCACCTTGTACTCCTGAGCAACTAACACTGGGACAGTGTGTCAGAGCAAGCA ATTCTCAAATGGCTGTGCTGTTTACAGGGCTTGGCATTCTAAGCATTGGTTCAGCTGGAGTGGCCCCTTGCAGCATTCCC TTTGGTGTTGACCAATTTGACCCAACCACAGATGAAGGGAAGAAAGGGATTAACAGCTTCTTCAATTGGTACTACGCCAC ATTCACCTTGGTATTAATTCTCACTCAGACAGCCGTGATCTATATACAAGACTCCGTGAGCTGGAAGTTAGGGTTTGGGA TCCCAACTCTGTGCATGTTCTTGTCAATAATCTTCTTCTTTGTTGGAACGAGGGTCTACGTGTATGTGAAGGCTGAAGGA AGTGTTTTTTCTGGTGTGGCCCAAGTTTTTGTGGCTGCATACAAAAAGAGAAAAGTCAAGTATCCAAGTCAGGAAGAGAT TAATGATGGAGTTTTCTTTGATTCCCCATTTTGTGGGACTGCTGTTTCGTCAAAACTCCCTATGACCAAACAATACAGGG TGTTGAACAAAGCTGCTATAGTAATGGAGGGTGAGCTAAATCCAGATGGAAGTAGAGTAAACAAATGGGAACTTGTGAGC ATCCAGCAAGTTGAAGAAATCAAATGCATAGCTAGGATCATCCCAGTATGGGCTGCAGGTATCCTCAGTCTCACTTCCAT GTCCCAACAAGGAACATTCACCGTCTCACAAGCCTTGAAAATGGAAAGACACCTTGGACCCAATTTCCAAATCCCAGCTG GTTCACTCGGAGTCATATCACTACTCACCATTGCTTTATGGATCCCACTCTATGACCGGTTCCTAGTACCAGCACTGAGA AAAAAAACCAAGCATGAAGGTGGCATCAGTCTCCTCCTAAGAATGGGAATTGGCATGGTGTTCTCTGTTCTATCAATGGT TGTGGCTGGCTCGGTTGAAAAAGTAAGAAGGGATTCAGCAGTTTCAAATTCAAATGCTCCAATCTCAGTTTTCTGGCTTG CTCCTCAGTTGATCCTTATGGGTTTCTTTGAGGCCTTCAATATAATTGCCCAAATTGAGTTTTTTAACCGGCAATTTCCC GAGCACATGAGAAGCATTGGTAATTCCTTGGTATCATTATCTTTTGGTGTGTCGAGCTACGTGAGCAGCATTATAATCAA CACAGTTCATCATACTACTGGAACACATGACCACCAAGATTGGTTGACGAATGATATAAACGCTGGCAGAGTAGACTACT TTTATTACCTCATAGCCGGGATAACCACCCTTAACTTGATTTATTTTATATATGTCGCAAGAGGATATCAATACAAGGGG AGTGTGCAGGTTGACCTCCATGACCATGATGATGTGGAGTTAGGATCACTCAAAGGCTAG
Protein sequence (LotjaGi4g1v0183700.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MASKENKAKKNPHSSPKKQPGGWKAMPYILANETFQRLAIFGLVANFMVYLTRELHLEQVYAATIVNAWFGFSNFGPLLG AFISDAYVGRFRTIAFGSVVCLLGMMVVTLTSWMTPPPCTPEQLTLGQCVRASNSQMAVLFTGLGILSIGSAGVAPCSIP FGVDQFDPTTDEGKKGINSFFNWYYATFTLVLILTQTAVIYIQDSVSWKLGFGIPTLCMFLSIIFFFVGTRVYVYVKAEG SVFSGVAQVFVAAYKKRKVKYPSQEEINDGVFFDSPFCGTAVSSKLPMTKQYRVLNKAAIVMEGELNPDGSRVNKWELVS IQQVEEIKCIARIIPVWAAGILSLTSMSQQGTFTVSQALKMERHLGPNFQIPAGSLGVISLLTIALWIPLYDRFLVPALR KKTKHEGGISLLLRMGIGMVFSVLSMVVAGSVEKVRRDSAVSNSNAPISVFWLAPQLILMGFFEAFNIIAQIEFFNRQFP EHMRSIGNSLVSLSFGVSSYVSSIIINTVHHTTGTHDHQDWLTNDINAGRVDYFYYLIAGITTLNLIYFIYVARGYQYKG SVQVDLHDHDDVELGSLKG
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 34 | 34 | - | – | |
| MobiDBLite | 1 | 20 | 20 | - | – | |
| PANTHER | 7 | 569 | 563 | 2.1E-262 | – | |
| PANTHER | 7 | 569 | 563 | 2.1E-262 | ||
| SUPERFAMILY | 15 | 555 | 541 | 2.22E-26 | ||
| CDD | 26 | 556 | 531 | 0.0 | – | |
| TMHMM | 34 | 51 | 18 | - | – | |
| Phobius | 35 | 53 | 19 | - | – | |
| Phobius | 54 | 59 | 6 | - | – | |
| Phobius | 60 | 83 | 24 | - | – | |
| TMHMM | 61 | 83 | 23 | - | – | |
| ProSitePatterns | 80 | 104 | 25 | - | ||
| Phobius | 84 | 94 | 11 | - | – | |
| Pfam | 91 | 515 | 425 | 7.8E-77 | ||
| Phobius | 95 | 116 | 22 | - | – | |
| TMHMM | 95 | 117 | 23 | - | – | |
| Phobius | 117 | 136 | 20 | - | – | |
| TMHMM | 137 | 159 | 23 | - | – | |
| Phobius | 137 | 163 | 27 | - | – | |
| Phobius | 164 | 182 | 19 | - | – | |
| TMHMM | 180 | 202 | 23 | - | – | |
| Phobius | 183 | 203 | 21 | - | – | |
| Phobius | 204 | 209 | 6 | - | – | |
| Phobius | 210 | 228 | 19 | - | – | |
| TMHMM | 212 | 234 | 23 | - | – | |
| Phobius | 229 | 233 | 5 | - | – | |
| Phobius | 234 | 254 | 21 | - | – | |
| Phobius | 255 | 328 | 74 | - | – | |
| Phobius | 329 | 349 | 21 | - | – | |
| TMHMM | 330 | 349 | 20 | - | – | |
| Phobius | 350 | 368 | 19 | - | – | |
| TMHMM | 369 | 391 | 23 | - | – | |
| Phobius | 369 | 390 | 22 | - | – | |
| Phobius | 391 | 410 | 20 | - | – | |
| TMHMM | 411 | 433 | 23 | - | – | |
| Phobius | 411 | 430 | 20 | - | – | |
| Phobius | 431 | 449 | 19 | - | – | |
| TMHMM | 448 | 470 | 23 | - | – | |
| Phobius | 450 | 469 | 20 | - | – | |
| Phobius | 470 | 489 | 20 | - | – | |
| Phobius | 490 | 513 | 24 | - | – | |
| TMHMM | 491 | 513 | 23 | - | – | |
| Phobius | 514 | 532 | 19 | - | – | |
| Phobius | 533 | 553 | 21 | - | – | |
| TMHMM | 533 | 552 | 20 | - | – | |
| Phobius | 554 | 579 | 26 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Biological process | Oligopeptide transport | The directed movement of oligopeptides into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. Oligopeptides are molecules that contain a small number (2 to 20) of amino-acid residues connected by peptide linkages. | ||
| Cellular component | Membrane | A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. | ||
| Molecular function | Transmembrane transporter activity | Enables the transfer of a substance, usually a specific substance or a group of related substances, from one side of a membrane to the other. | ||
| Biological process | Transmembrane transport | The process in which a solute is transported across a lipid bilayer, from one side of a membrane to the other. |
Expression pattern of LotjaGi4g1v0183700.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
Loading expression data from ljgea-geneid. Please wait…