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| Field | Value |
|---|---|
| Gene ID | LotjaGi4g1v0185200 |
| Transcript ID | LotjaGi4g1v0185200.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Retrovirus-related Pol polyprotein from transposon TNT 1-94; TAIR: AT1G21280.1 Copia-like polyprotein/retrotransposon; Swiss-Prot: sp|Q6TDP4|KLH17_HUMAN Kelch-like protein 17; TrEMBL-Plants: tr|A0A151R7L7|A0A151R7L7_CAJCA Uncharacterized protein; Found in the gene: LotjaGi4g1v0185200 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:40732257..40734710) extracted from Lotus japonicus Gifu genome v1.2.
CTCTCTAACCCAATTCCTAAACTGAATAACAAGATGATTAATGCTCTCTAATCCCCTCTTATTTATAGGCAACAAGCTTT ACAAACCCCCTTAACTAACTATCCAATTATATGATAACTCCCACACTTAACTAACTAAACCATGTGTACCTATCAATACT CCCCCCCTGAAAATTCACCTTGTCCTCAAGGTGAAGGACTGAATCCCATTGAATGCCAGTGCTGAAAATCCACCACTATT CCACCAGGGTCCCATAGCCGAAAGCAAAGAGTCCAAAAGATGTTATGACTTGGGGGAAATTATCATTGTCCTCGACATGA AAGGATTGGCAGGTATCGTCCTCGACAGAGATAATGATACAACTCTAGTTTTTCGAGCGCCAGCCTCTCCTAATTTTGGA ATTCGAGAGTGCAGTCTCTCCCCATAAAACACACGACTTCTGTCAAAGGAATTGATTGACTAATCAATTGAATAACAATT ACTGACCAGATTAATTGCTGTATATAATTGTAGTTGACCAAGCCTGTAATTAGGATTAATTGTTGATTAGCTGTTACAGA TCAGAGAAATTATTCCCATAATTAGGAGAGATATTATTTCCATATTTGTAATATGTTATCAGTATAAAGTTAGCTCTATG CTGTGTACTCAGCATCAAGACAGTATTTTCATTCCATATTTTCCTGAGTTTGACATGGTATCAGAGCTGGTTTTCGATCA TATCCTAGTCTAGCCAGAAAATTCCTAGTCTCTTGTCCTAGACCACGTTTTTTTTCTCAGCCTTGTCCTAGTTCAGACCA CGTTCCTTCGTGGTTATCCTCGATACACCCTTTGTCTTCGTTTTTTTTTTCTCAACCTCATGGCTACAGAAAAATTTGAT GTCTTATTTGTTCGCCTTAATGGCAAGAACTACTCAACCTGGGCATTTCAATTCGAAATATTTGTCACGGGTAAGGACCT TTGGGGTCATGATGATCGCAGCGACCCAGCTCCTGATAAAGACAAACATAAGACTGAACATGTCAAGTGGGAGGTAAAAG ATGCTCAAGTCAAGACATGGATCATCAGCTCTGTTGATCCCAGCATCGTTCTTAATCTTCGACCGTTCAAGATGGCTGCC GATATGTGGGACTTCCTAAAGAAAATCTATAGTCAGAATAACGCTGCTCATAGGTTCCAACTGGAACATGACATCGCCAT TTCTCAGCAGGAAAGTCTCTCGATCTCTGAATTTTACTCTCATTTCACGAATCTTTGGGCTGAATATACTGACATAGTCC ATGAGAACTTGACTGCTGATGGTCTTAAATCTGTACAGTTAGTTCATGAAACTACTAAACGAGATCAATTTCTTATGAAA TTGAGATCTGACTTTGAAGGCATCAGGTCTAATCTCATGAATCGGAACCCTGTACCCTCATTGGATTCATGTCTCAATGA GCTACTTCGTGAAGAACAACGCCTCCTCACTCAAACATCCATGGAACAACAAAAGTCCACCTCTGTTCCAGTGGCATATG CAGCACCAGGAAAGCCAAGAGGGCGAGACATGAGTGTTGTTCAATGTTTTTGTTGCAAAGGCTTTGGACATCTTGCTGCA AATTGATCAAAAAAGTACTGCAATTACTGCAAAAAGAATGGACATATTATCAAAGAATGCCCAATAAGACCTCCAAAGCG ACCGGTCACAGCATTTACTGCCTCGGTTGGTTCTTCTTTTCCTAGCAATTCTGCCAATTCAGCATTTGTCCAACAAAATG CTCCTGCCCCTGTTCAAACTCTGACTCCTGAAATAGTTCAACAAATGATCATTTCCACATTTTCTGCTTTGGGAATCTCA GGTAAATTTTTCTCTACCTCTTCCCCTTGGTACTTTGACTCTGGGGCTTCCCACCATATGACAAACAATGCTCAATTCCT TACTGATGTCACCAAATATTCTGGAAATCTCATGATTCATACTGCTGATGGCAACCAATTACCTATTACAGCCACTGGTG ATATTTCTTCAACTCTAACAGATGTTTTTGTGTCCCCTGGTCTCACTAGTAATCTTATTTCTGTTGGTCAGTTAGTTGAC AATGACTGTCGGGTAGAATTCTCAAAATCTGGTTGTCTTGTGCAGGATCAACACACGGGGAAGATGATCGTGAAGGGGCC TAAAGTTGGACGTCTTTTTCCACTCCATTTCCCTTTGTCTCAATGTCTTTCATTGCCTTCTGTTTCTTGTAATTCTGCTA ATGTTGATTACCAAACGTGGCATAAACGTCTTGGTCATCCAAACTCAGTTGTACTTCATGACTTGCTGAAATTTGGTTTC CTTGAAAATAAAAAGATCCCATCTTTTAGTACTATTCAGTTTGATTGCAGTTCGTGTAAACTTGGCAAGAGTAAGATTCT ACCTTTTCCAACTCATCATTCGAATGTAGAAAAACCTTTTGATATGATCCATAG
CDS sequence (LotjaGi4g1v0185200.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCTACAGAAAAATTTGATGTCTTATTTGTTCGCCTTAATGGCAAGAACTACTCAACCTGGGCATTTCAATTCGAAAT ATTTGTCACGGGTAAGGACCTTTGGGGTCATGATGATCGCAGCGACCCAGCTCCTGATAAAGACAAACATAAGACTGAAC ATGTCAAGTGGGAGGTAAAAGATGCTCAAGTCAAGACATGGATCATCAGCTCTGTTGATCCCAGCATCGTTCTTAATCTT CGACCGTTCAAGATGGCTGCCGATATGTGGGACTTCCTAAAGAAAATCTATAGTCAGAATAACGCTGCTCATAGGTTCCA ACTGGAACATGACATCGCCATTTCTCAGCAGGAAAGTCTCTCGATCTCTGAATTTTACTCTCATTTCACGAATCTTTGGG CTGAATATACTGACATAGTCCATGAGAACTTGACTGCTGATGGTCTTAAATCTGTACAGTTAGTTCATGAAACTACTAAA CGAGATCAATTTCTTATGAAATTGAGATCTGACTTTGAAGGCATCAGGTCTAATCTCATGAATCGGAACCCTGTACCCTC ATTGGATTCATGTCTCAATGAGCTACTTCGTGAAGAACAACGCCTCCTCACTCAAACATCCATGGAACAACAAAAGTCCA CCTCTGTTCCAGTGGCATATGCAGCACCAGGAAAGCCAAGAGGGCGAGACATGAGTGTTGTTCAATGTTTTTGTTGCAAA GGCTTTGGACATCTTGCTGCAAATTGA
Protein sequence (LotjaGi4g1v0185200.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MATEKFDVLFVRLNGKNYSTWAFQFEIFVTGKDLWGHDDRSDPAPDKDKHKTEHVKWEVKDAQVKTWIISSVDPSIVLNL RPFKMAADMWDFLKKIYSQNNAAHRFQLEHDIAISQQESLSISEFYSHFTNLWAEYTDIVHENLTADGLKSVQLVHETTK RDQFLMKLRSDFEGIRSNLMNRNPVPSLDSCLNELLREEQRLLTQTSMEQQKSTSVPVAYAAPGKPRGRDMSVVQCFCCK GFGHLAAN
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 134 | 134 | 1.3E-50 | – | |
| PANTHER | 1 | 134 | 134 | 1.3E-50 | – | |
| Pfam | 8 | 36 | 29 | 2.5E-6 | ||
| Pfam | 57 | 202 | 146 | 2.0E-12 | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi4g1v0185200.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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