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| Field | Value |
|---|---|
| Gene ID | LotjaGi4g1v0187300 |
| Transcript ID | LotjaGi4g1v0187300.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Transposon Ty3-I Gag-Pol polyprotein; TAIR: AT1G48520.1 GLU-ADT subunit B; Swiss-Prot: sp|Q9RZE7|PARB2_DEIRA Probable chromosome 2-partitioning protein ParB; TrEMBL-Plants: tr|Q949K8|Q949K8_CICAR Gag polyprotein; Found in the gene: LotjaGi4g1v0187300 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:42555996..42564132) extracted from Lotus japonicus Gifu genome v1.2.
ATTGAATTCTGTGATTTTGCTCAAAGGTTCGTTTGGAGAACTTCTTGGAGCGGAAGGAGAGGATTGTGAAGGAACCTTGC TGGAACACAGTGGACGAATTAGAGGTGAGGGCTACTCACTGATTACTAGCAAATGCTTTAGGTGTCGACAAATTCGACTT GATTTATTGTTTATACTCTTGATTGTTGACTGAACTGGAAAATGTTTTCTGGAGGCTTCGACCGAGTGAACTGATTGAGA CGTGTGTCTCCATTTTCTGGGGCTTCGGTCAACATTGGTGATTGAGATTTATTTATCGCTTTGGCTGTCGTTGATTGATT CACATGCTATGTGCTAATGGTTAATCTTAGGATGTGTTGATATATGTGTCATGATTGTTGGATTGTGCTAACTTGGTTGC ACAATTATACATATATCTGTTGTACTCCCTTCACTCTAGATTCTACAATTGAAGGAGTACAACATATATATGTATAATTG CACAACCAAGTCAGCACAATTCAACAATCATGGCACATATATCACATACATCTTAAGATTTCTTCCGAGAATTGGAATTG GATGTTCCTACATTCCAGGGTTTCGTGTCGAAACGCTTGTCATGGAAAGGAATAAGATAAATTCTTATATTCCTCTGAAG ATTTTTGAAATTCGTTTCTATAGTTCTTTAAGAGCAGATTAGTCATATACCAACGCTCTTGCCCTAGGCACAAGCAAATA AGACTCGCGCTATAACTTATATCGACTTTAATAATATTCTTAGCCTTTTTCCTGAACTTTCTCCTTCATAAATGTATTCC CTTCAGTAAAGACTCATTCAGAATTCCTTCACGATACATCGAAACCTAATCGTGAATAGGAAATTTAATTATTTATTCTA AGCTTAAAAACATGGGGCTCACAGGACTGGTCCTAACAAAGCGGATCTCTAGATCTAGGAGATAGAGAAGATTTATGGAG TGCTGCAGACCGCTAAAGAAGCCAAGGTGGGCATGGCTACATACTTGCTACTGGGAGATGCTGAATACTGGTGGAGGGGC GCCAGAGGGATCATGGAAGCTAACAATGAGCAAGTCAACTGGATCATTTTCCGTAATGCATTTATGGAGAAGTACTTTCC AACCAGCGCTCGAGATGAGAGGGAGGCACAATTTCTGACTCTTTGTCAGGGAGGCATGTCCATACCAGAGTATGCTTCTA AACTGGAGTCTTCGGCTAAGCATTTCCAGTTCTTCAACGATCATGTCGACGAACGCCACATGTGTAAGCGCTTTGTGAAT GGACTGAGGCCCGATATTGAGGATTCAGTGAGGCCATTGGGGATCGTGCGATTCCAGTCATTGGTGGAGAAGGCCACAGG GGTGGAGCTGATAAATAACAAGAGGTTTAACATAGCTGGAACTAGGGGACCGATGAGGTCAGGTTCCCAGAGCTACCAAG GAAAATGAAAATTTTAGAGCCAGAAGTCGTATTAACGTCATGCGGAAAAGGGTTTACCCCAGGATTTCAGAAGTCCGTGA AGACTACTGCTGGAGGTGCAGGAAACCAGGCCGCGACCAAGGATGTGACCTGCTACAAGTGTGGGCAGCAAGGGCACTTT ACTAATGCTTGCCTAGATGTTACAAGTGCAACCAACCGGGACACAACGCCAGTCAGTGTAGGGCACCCAAGACTGAGCCT TCTGTTAACACTGCAAGGGGAAAGCGCCCTGCTGCTAAGGCAAGAGTTTACACCATGGATGGTGAGGTAGCTGACGGGGT TGATGGTTTGATCAGGGGACAGTGCGAGATTACGGTAACCTCCTAACTGTACTCTTTGATTCCGGTGCAACGCATTCTTT TGTCTCTAAGGACTGCGTGTCAAGACTGAAATTACCTGTTACTGCTTTGAGTTTTGACCTTATGGTGACTACACCTACTA AAACCCTACTTGCTAATACTGCTTGTATGCACTGCTCTATAGTGTATAGAGATAGAACCTTTCATGCTAACCTAGTATGT TTATCCCTTAAGAACCTAGATGCCATCCTAGGGATGGATTGGTTATCACATTACCATTGTCTTTTGGACTGTAGCCGAAA GAAAATGGTGTTTCCTGACTCGGATCTTTTCGAGTACTTGTCTGCTAATCATATTAGTGTAACCTTCAACGAGGGATCCC AAGAGTATTCCTTACTACTGAGCCTAGAGGGTAGGGAGCACTCAGATGTCCGTAGAATTCCAGTTGTGCGAGATTTCACT GATGTCCTTCCGGGAGATGTACCTGGATTACCGCCTGTACGCGATGTGGAGTTTGCTATCGACATAGTACTTGGAACAGG ACCGATCTCGATTGCAGCGTATCATGTGGCACCTCCAGAACTAATGGAGTTGAAGTCTATATTGGAGGATGTTTTGACAA AGTGATTCATTAGACCAAGTGTTTCACCGTGGGGAGCGCTAGTGTTGTTAGTGAAGAAGAAGGATGGGAAATCCAGATTG TGTGTGGATTATCGACAGCTCAACAAGGCAACCGTCAAGAACATATACCTGTTGCCGAGGATTGATGATTTGATGGATCA GCTCAGAGGGGCTGCTGTGGTTTCAAAGATTGAATTGAAGTCAGGATACCATCAGATTAGAGTGAAGACTGAGGACATAT CGAAGACTTCTTTCAGAACCAGATATGGACACTATGAGTACCTAGTGATGCAATTCGGAGTGACAGATGCACCTCCTATT TTCACGCATTACATGAACAGAACATTCCATGCGTTCTTAGATCGGTTTGTAGTGGTGTTTATCGACAACATTCTGATCTA CTCCAAGGATGATATGGAACATGAGGAACATCTACACCAAGTGTTGCAAGTGCTAAGGGATAAAAAGTTGTATGCAAACC CTTCCAAGTGTGAATTTTGGGTTGATGAAGTCAAATTCTTAGACCATGTTATCTCTAAGATGGAACTGTTGTAGATCCGG CGAAGGTAGACACCGTTCTAGGGTGGGAACTGCTGAAGACTGTGATTGAGATCAGGAGTTTTGTAGGCTTAGCTGGATAT TATCACCGTTTCATCGAGAACTTTGCCAAGATTGTTGGACCTTTGACTCAACTTACAAGAAAGGATCAACCATTTGCATG GACAGACGCGAGCAAAACAAGTTTTCAGACTACGAAGGAACGTTGACAACATCACCTGTACTTATTCTACCGCAACCAGA AGAACCTTATGAAGTATATTGTGATGCTTCACATCAAGGATTGGGATGTGTGCGGTTGCCACATCGAAAGGTAGTGGCAT ATGCTTCAAGACAGTTCAAGACTCACGAGAAGAACTATCCGACTCACGATTTGGAGCTAGCTGCTATTGTTTTCTCATTG AAAATCAGGAGACATTATCTTTATAGATGTACTTTCAGTATATTCAGCGATCACAAGAGCTTGAAGTACTTATTTGATCA GAAGAAACTAAACATGAGACAACGTCGATTGTGATGCCCGGGGCCGACGAGGGCGGGGAGTGATCGCTGGTGCAGTGAGG CACATATAAGGAGCGGCTCTTGGCAGGCTTCTAGGCGGAGGGGCACATGAATGAACTGATTTCACACTCGAACAAGAGGT ATTCCGAGACTATGTAGGGATGGACTATACAGTTGAGAAGGGCATAAAAGATTTGATTGTACTACCCATAACAACAAGAT ACATCTTCTTTTCGAGAGCCCAACTCATAAAAAACTCAATGGTTAAGTGTGCTTGCCTTGGAGCAATATTATGATGGGTG ACCTCCTGGGAAGTTTTCCCGGAAAGTGCGTGAGTGAGGACAAAGCGCACTGAAATGAATCGTGTTGTTACCGTGAGGCC AGTTGTCAGATCGGGATGTTACAGTTGGTATCAGAGCCGACCTCTCCCAGTACGGTGTAGTTCGGGGACGAACCAAGCGG AAGCTGGTGGGCCTGTGACGCCCGGGGCCGACGAAGGCGGGGAGTGATCGCCGGTGCAGTGAGGCAGGGACAAGGAGCGA CTCCTAGCAGGCTTCTAGGCGGAGGGGCACATGAATGAACCGATCTCACACCCGAACAAGAGGTATTCCGAGACTATGTA GGGATGGACTATACAGTTGAGGAGGACATAAAAGATTTGATTGTACTACCCATAACAGCAAGATACATCTTCTTTTCGGG AGCCCAACTCATAAAAAACTCCATGGTTAAGTGTGCTTGCCTTGGAGCAATATTATGATGGGTGACCTCCTGGGAAGTTT TCCCGGGAAGTGCGCGAGTGAGGACAAAGCGCAATGAAAAGACTCGTGTTGTTACCGTGAGGTCAGTCGTCAGATCAGGA TGTTACATCGATGGATGAAGTTCATCAAGGACTATGAGTTCACTTTGCAATATCACCCAGGGAAAGCTAATGTATTTGCT CATGCTTTGAGTAGGAAGATGCATGTCTCATAAATGATTGTTAAAGAGTTGGAGCTACTTGAACAGTTTCGAGATTTGAG TTTGGGAGTGTCAGCGTCAGAGGGAAAGTTGAAGTTTTGCATGATCAGAATCGCCAGTGGTTTGATGGAAGAAATTCTAG AACAACAATTGCAAGATGAGTTTCTGCTAGAGAAGAGAAATCTGGTAACTCATGGCAAAGATCCAGAATTCAAATAGGAA CCGACAACATTCTGCGATGCAAAGAAAGAGTTTGTGTACCGAAAAACCTTGAACCGAGAAGACTAATTATGGATGAAGGA CACAAGAGCAAGCTGAGTATTCATCCGGGTATGACAAAGATGTATCAAGACTGGAAGATAAATTTCTGGTGGTCAGGAAT GAAGAGACAAGTGGCTGAGTATGTGGGTGCATGTTTAACTTGTTTGAAAGCTAAGGTAGAGCATTAGAAACCTTCATCCA TGCTACAGAGTTTAGACGTGCCAGTGTCGAAGTGGGATAGTATATCCAGGGATTTCATGGTGGTTTTGCTAAGGACTCAA AAGAAGTATGATTTGATTTGGATAATCGTAGACCGTTTGACTACTTACAATGTGGAGAGGTATGCTGAGATTTACATTGC TGGGATTGTACGACTGCATGGAGTACCAACTAGTATCGTGCGTGACAGAGACCCAAAGTTTACATCACATTTCTGGGGAG CTCTTCACGGGGATCTAGGAACAAAGCTGAGGATAAGTTCTGCTTATCATTCGCAGACCGATGGATAGACTGAGAGGACT ATTCAGTCGTTAAAAGATTTATTGCGAGCTTGTGTACTGGACAACAAGGGAAGTTGGGATGATCTTTTACCACTGATTGA GTTTACCTACAACAACAGTTTTCATTCGAGCATAGGAATGGCACCGTGTGAAGCTTTATATGGACGGAAGTGTCGAACAC CATTGTGTTGGTATCAAGATGAGGAGAATTTGTTGATTGGACTGGAACTTCTGCAACATACGACAGATAAAGTTAGACAG ATCAGAGAGAAGATGAAGACTTCTCAGAGTAGACAGAAGATTTACGCCGATCAGCGACGCAGAACCCTAGAACTTCGACA AGAGATTGTATTTGGAAGGTTATTTGGAACCAAAACACGGGCGATGCTACGTGGGAGCTAAAGGAAAAGATCAAGGAGCA GTATCCGAAACTATTCGCCTAACCCTAAGTTTCTGATGTAACGGGAACGAAGATTGATCAAGTGTATACCGATTTGGATG GCTTTGTGAAGAAGAAATGTTGTTACTTTTGATTGTCTTGCATTTTGTCCAAAACAACCTGATGTCGAAGCAGATGCTAT GACATCTGCCTATGTATGGCACATGACATCAGTCCATAAATTGGAGTGCTTATGTGTGCTCTGAAAATCTGGTAAAGATG TTATTGTGGTTACTTACGGTTTAAGTAGCTGTATTATAGTTGTTTAATGTGGGCTGGTTTAATTGTTGGAATAATCTCTG ATTGAAGATGGATTCCTATTGTGTTATTGGTGATTGATATGTGAACGCAATCAACATTTATGGAAGATTGCGTTTTGATT TGTTGCTGTTGGACTACTGCTTCAGCCTTTGGAAACCCTATTGTTTCCGCTGAAGCTTATACATATTGAAGACCTAAAAC ATGATGATTACTCAAGCTATTGAGAGAAATAGATCAAGTGTCTTAGGGTGGTGATTTGTGCTAGTCCTTGTTTTCGTGGA AATCAAGATATTATATTTGGAACCAAAACACGGGCGATGCTACGTGGGAGCTAAAGGAAAAGATCAAGGAACAGTATCCG GAACTATTCGCTTAACCCTAAGTTTCGAGGACGAAACTTTCTTTTTGGAGTGTAGTTTTGTAAGACCCTAGTTTTTAGAA TAAGTTAAATAATTAATTTCTTATTCACGCTTAGGTTTCCGATGTAACGTGAATGAAGATTGATCAAGTGTATACCGATT TGGATGGCTTTGTGAAGAAGAAATGTTGTTACTTTTGATTGTCTTGCATTTTGTCCAAAACAACCTAATGTCGAAGCAGA TGTTGTGACATCTGCCTATGTGTAGCACATGACATCAGTCCATAAATTGGAGTGCTTATGTGTGCCCTGAAAATATGGTA AAGATGTTATTGTGGTTACTTACGGTTTAACTAGCTGTATTATGGTTGTTTAATGTGGGCTGGTTTAGTTTTTAACTGGT TACTAAAGTGACGCTCCGAAAGTCGGGGTGTTACAGGAATCAATGAGACTGTTGGGAATCACGCGGTTTCAAGCACTGCT GGAGAAAGCCACATAGGTAGAGATCATGAAGAACAAGAGAATCAATGAACCAGGCGTTGGGGAACCTATGAGGTTGAACT TCCAAGGTCAGGGAGGGTTTAACAAAGTTAAACAACTCCAGAAGAAACCATATCATCGACCATATGGTAAGGGATCTTCA CCGAGGCAGTATAGGCCCTTAGCTGCTGCTTCTAGAGGACAAAGGAATCACAACGAGAATAGAGATGTTGTGTGCTAAAA CTGTGGAAAGAATGGACATTATGCCTATATACGCTAGGAGAATAAGCCACGATGCTTCAACTGTCAAAGATTTGGGAATC TTGCGAAGGATTGCAAGGCGCCAAAGGATGAGCCGTCAGTGAATATAGAGATGTTGTGTGCTAAAACTGTGGAAAGAATG GACATTATGCCTATATATGCTAGGAGAATAAGCCACGATGCTTCAACTGTCAAAGACTTGGGAATCTTGCGAAGGATTGC AAGGCGCCAAAGGATGAGCCGTCAGTGAATACTTCCAAAGGAAAACGTTCAGCTGCAAAGGCAAGAGTGTACACATTGGA AGCCAAAAACGAGAGCTTGGGTGAAAAAAAAAGAGGATATAATTTCTTAAGTCACCTAGAAACATGCTTAGGAATGGCAA TTGGAAAAATGCATGGTATGTATGCTTGAGTGAGTAATGACCCTCTTTTAGTCTTGTTTCTAGGGTCATTTCGTTGTAGG TTTTGAGTTTTTTTTTTTTTGTTGAGTCTCATGTAGTGTTTCATGCATTCTCATGCATTTTTATCTTTATCTGTGTTTTT GCTTTGTTTTGGTAATTTCCTAGTTTTATTAGGGCTTTATTTGCATTTTAGGTTAGTTTAAGAGTTTATTGAAAGTTCCA CTTGTTTTGAGGGCCTTTGTGAAAAACTGACCTTCAAGTTTCTAGATATTTCCTAGCTTGTGCATTAAGTTTTTCAGGTT GAATCAGCTGAAGATGGAAGGTCTAGGGGTTTAAAGACTTGAAGGAGGCATTATAGTGGAGTACAAATGAAGTTCAAAGG GTTTTTGAGCGTGCCAATTAAACAATAGGTGTTGGTGCCAGATTTTGATGCTGACACTTGAGCGTCCTGGAAGAGCGCTT GAGCGCCCATTAGACAGAAAATTTCTGTTTTGAGGGCACTGAAGCATGCTTTTGCAGTGCTTGATCGCCCAGACTCAACC ATTTTCTCATATTCTAATAAGTTAGAAGAAAGGGTTTTGGTTCCGGAGTTTGGGAGCTTTCTCCAAGTCCAATTTTTCAG GTTTTACCTTCCTTTTCTTGTATGGATTTCATGGCCATGTTTGGCTAAACCCCCTTGTGCTTTGAATTCTTTATAAGACT TTGGATGTTTTAGTTGTAATTCCTTTTCTATTCATGTGTTCTGAGTAAACCCTTGAA
CDS sequence (LotjaGi4g1v0187300.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCTACATACTTGCTACTGGGAGATGCTGAATACTGGTGGAGGGGCGCCAGAGGGATCATGGAAGCTAACAATGAGCA AGTCAACTGGATCATTTTCCGTAATGCATTTATGGAGAAGTACTTTCCAACCAGCGCTCGAGATGAGAGGGAGGCACAAT TTCTGACTCTTTGTCAGGGAGGCATGTCCATACCAGAGTATGCTTCTAAACTGGAGTCTTCGGCTAAGCATTTCCAGTTC TTCAACGATCATGTCGACGAACGCCACATGTGTAAGCGCTTTGTGAATGGACTGAGGCCCGATATTGAGGATTCAGTGAG GCCATTGGGGATCGTGCGATTCCAGTCATTGGTGGAGAAGGCCACAGGGGTGGAGCTGATAAATAACAAGAGGTTTAACA TAGCTGGAACTAGGGGACCGATGAGGTCAGGTTCCCAGAGCTACCAAGGAAAATGA
Protein sequence (LotjaGi4g1v0187300.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MATYLLLGDAEYWWRGARGIMEANNEQVNWIIFRNAFMEKYFPTSARDEREAQFLTLCQGGMSIPEYASKLESSAKHFQF FNDHVDERHMCKRFVNGLRPDIEDSVRPLGIVRFQSLVEKATGVELINNKRFNIAGTRGPMRSGSQSYQGK
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | 1 | 100 | 100 | 4.9E-11 | ||
| PANTHER | 2 | 133 | 132 | 2.1E-27 | – | |
| PANTHER | 2 | 133 | 132 | 2.1E-27 | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi4g1v0187300.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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