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| Field | Value |
|---|---|
| Gene ID | LotjaGi4g1v0187700 |
| Transcript ID | LotjaGi4g1v0187700.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Leucine-rich repeat (LRR) family protein; TAIR: AT4G35470.1 plant intracellular ras group-related LRR 4; Swiss-Prot: sp|Q8S7M7|PIRL5_ORYSJ Plant intracellular Ras-group-related LRR protein 5; TrEMBL-Plants: tr|I1MVE1|I1MVE1_SOYBN Uncharacterized protein; Found in the gene: LotjaGi4g1v0187700 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:42807247..42810436) extracted from Lotus japonicus Gifu genome v1.2.
CAAAAATCCATTTTAACGTTTGTCATAGTAAGCTGTCCTGTATATATACTTACCACTTTTCTGTCCGTCTCTCATCACTA CCCACGAGATTTTCTGTCTGTTTTTCCGTTTCCCCTTTGTTTCTTTCTCCCAAACCCTGTTTCTTCTTCTTCTTCTTCTT CTTCTTTCAGTTTCTTCTTCCACGATGCCTCATCACAGTGAGAAAGACCCATCATCATCACCGCAACCACCTTCACGTGC CATTCTAGACACAGTACAAGAAATCACCACCATCTACCGTTCACTGCCACCTCGACCTTCCGTACAAGAGTTGGAAGCAG CCACGTCAACGGTGGACACCGTGAACAACGTGGAGCAAACCAAACTGCATGAAATTTCTGTGCAGAAACCACCCCACGAT GTCCCTCAGGAACTTTTCTCTGTCCTGCAACAGGTTAAGAAGACCATGGTCCTGTTCCAGAGCCAGGAACAGAGAAGAGA GGCGCTCTACCTTCTTGAAATTGAAAAGATGTTTCAGACATTCGGTGATCTCATTCTGAAGGCTTCTGATTTGGTTTCTG GGGATGGGGATTCTCACTCCCAGAACCAGTTACAGAAACTTCCCACTATTCATGAACACCTTGAGACAATTTCAACACTT GATGATGGAATTTTGATGAGGAAGGAGGAGGAGGAAGAGGGAGAACAGCAGAAGAGTGATTTGGGAGTGGAAAAGGGTTT CTCTGTCAGCAAGGCGTTCTTGTCAGCAGGTTAGTTCCAAAATCCAATCTTTTTTATGGGAAATGATAAACCTGATTCTA TATTTAGTAATGCGTTTTTCCCTCTGATGATTATTCAGTTAAATTTGAAAAATTGGATACCTGATTGTTTGTACTTCAGA ACCATTTCTGTTTATGTTCTTTGTTTCTCTGTCTCTTGTGTAAAAGAGTAGAGAAACAAATTATAATTATACTTAGAGCA TGTTTGGAAAGCAGAATCAATTATATGGAGTCAATTCTCCTTGGTTAAAATTAATTCTAACTAGTTGAAATGGTTTTTGG CTGTATCATACTATCAGTAAAATTGATTTTGTGCATATTTGGACACACGGTAGAAAACCAAAGTGAGGTCAAGATAATGG TGGTCTGGTGGACTTGCTTTTGTCCACCGTGATTTTGGCTTCACTGAGGTTTTCCACTGTATATCCAAACACAACAGCAA ATCACGGTGATGCCAAAATCATGGGTCAAGAATTGGATTCACTAGCCGCAAAACCTACTTAATTCTAAGATTTTACAACT ATGTTTTATAACACTACCCTAAAAAAAATCACTTTTTGGTATTCAAACATAAATAACGTCATTTTACATCACATTTACCA TACACAATTTTAGTAGAATCAACTCTGTCCAGAATCAATTATGCTAACGTTGATCCAGACACGCACTTAGAATTTGCTTA TGAAGGTGTGTGTGATGTTCATGCTTTGATTTGACTTTAAATTTTGTAGGTGATGGAAGCCCTGCCAAATTAAGTCTCAT GAAAGTGGCTACTGTTGTTGAAAATTGTGCTAAAAGTGGAGATACAATCCTTGATCTCAGAGGGAAGTTGGTGGATCAGA TGGAGTGGTTGCCAGTTTCAATTGGGAAATTATCTGATGTCACTGAAGTGAACCTATCTGAAAACAGACTCATGGCTCTT CCAGCAACCATTGGGGGACTCAAGGCCTTAACAAAGCTTGATCTTCATTCAAACCAGCTGATAAACCTTCCCCAGTCATT TGGTGAATTGATAAACCTTGTTGAACTGGACCTTCATGCAAACAGATTGAAATCACTTCCTACAACTTTTGGAAACTTGA CAAATCTCACTGATCTTGACTTGAGTTCAAATGCGTTCACACAGTTACCAGAGACAATTGGGAGTTTAAGTAGCTTGAAG AGGTTTATCGTTGAGACAAACGAGCTTGAGGAACTGCCTTATACAATTGGGAATTGCTCCTCCTTATCTGTGCTGAAGTT GGATTTTAACCAGCTCAAGGCCCTTCCTGAAGCAATTGGGAAGCTAGAATCTATGGAGATTCTCACTTTGCACTATAATA GAGTTAAGAGGTTGCCTTCAACAATAGGTAATCTATGCAACCTGAAGGAACTTGATGTTAGCTTTAATGAACTCGAATTC GTGCCAGAGAACCTGTGTTTTGTAGTTACTTTGAAGAAATTGAACTTGGGAAATAACTTTGCTGATCTAAGAGCCTTGCC AAGATCAATTGGGAATCTTGAAATGCTTGAGGAGTTGGATATAAGTGATGATCAAATAAGAGTTTTGCCAGAGTCTTTTA GGTTCTTGTCGAAGTTGAGAATTTTCAAAGCTGATGAGACTCCTCTTGAGATGCCACCAAGAGAAGTGATCAAGTTGGGT GCTCAGGTAAACTTTTTGAGGTCAAAATTTGCATTGCTTCTATTATCATAATGTTTAGATCACTTTAGTTTATCTCAGAA TCATTTCTGAAACTTAAAAACTACTCACGTAAGTTTCTCTGCATAATTAATTTTGGCTTTAGAATCAATCGAAGAATGAT TTTTTCAAACATGCACTATATGTCAGTTGCTCTATTTACTTACAATCTCCTAATTCTTGTTTATCAGGAAGTTGTGCAGT ACATGGCTGATTATGTCGTTGAGAGGGATGCAAACCTTTTGCCATCAAAGAAGAAAAAGAAGGGATTTTGGTTCTGGTTT TGCTCTATATTTTGCCCTCAACAGAAATGATATTTTTAGCATGACCTTGCTATTGTGTTTCTTCAAGTTAGACATTGTTT TCCTAATAAAATGACCTTGCTGTATAGTTTTGGGTTTTCCTTGTGAACTGTAAAGTATGTTTCTAAATTTTGAATTTCTG TTTTATCTTTGTATACAAGAGAGTGCTTGTAATAACTTTGATCATTTGATACTCTTGTCATTTGCAAATGAAATGAAGAT ATAATGGTATCAACGCCGTTGAGTTTATTGCTTCTATAGAAAATATCCTTAATTATACACTTTCATTGAAAATTGTATGC ACGTGGCTATTAGAAAAGGAAAATAGTAGTATGAGAGAGGTGATTTGAGATAAATGGATGAGTGAACATGTGAAATTGAG TGGAGTGTATGGTGGAAAATAAAAACTAGAACGTTGACAAATTAGAGTTTGCTTTTTTAATAATATGCAG
CDS sequence (LotjaGi4g1v0187700.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGCCTCATCACAGTGAGAAAGACCCATCATCATCACCGCAACCACCTTCACGTGCCATTCTAGACACAGTACAAGAAAT CACCACCATCTACCGTTCACTGCCACCTCGACCTTCCGTACAAGAGTTGGAAGCAGCCACGTCAACGGTGGACACCGTGA ACAACGTGGAGCAAACCAAACTGCATGAAATTTCTGTGCAGAAACCACCCCACGATGTCCCTCAGGAACTTTTCTCTGTC CTGCAACAGGTTAAGAAGACCATGGTCCTGTTCCAGAGCCAGGAACAGAGAAGAGAGGCGCTCTACCTTCTTGAAATTGA AAAGATGTTTCAGACATTCGGTGATCTCATTCTGAAGGCTTCTGATTTGGTTTCTGGGGATGGGGATTCTCACTCCCAGA ACCAGTTACAGAAACTTCCCACTATTCATGAACACCTTGAGACAATTTCAACACTTGATGATGGAATTTTGATGAGGAAG GAGGAGGAGGAAGAGGGAGAACAGCAGAAGAGTGATTTGGGAGTGGAAAAGGGTTTCTCTGTCAGCAAGGCGTTCTTGTC AGCAGGTGATGGAAGCCCTGCCAAATTAAGTCTCATGAAAGTGGCTACTGTTGTTGAAAATTGTGCTAAAAGTGGAGATA CAATCCTTGATCTCAGAGGGAAGTTGGTGGATCAGATGGAGTGGTTGCCAGTTTCAATTGGGAAATTATCTGATGTCACT GAAGTGAACCTATCTGAAAACAGACTCATGGCTCTTCCAGCAACCATTGGGGGACTCAAGGCCTTAACAAAGCTTGATCT TCATTCAAACCAGCTGATAAACCTTCCCCAGTCATTTGGTGAATTGATAAACCTTGTTGAACTGGACCTTCATGCAAACA GATTGAAATCACTTCCTACAACTTTTGGAAACTTGACAAATCTCACTGATCTTGACTTGAGTTCAAATGCGTTCACACAG TTACCAGAGACAATTGGGAGTTTAAGTAGCTTGAAGAGGTTTATCGTTGAGACAAACGAGCTTGAGGAACTGCCTTATAC AATTGGGAATTGCTCCTCCTTATCTGTGCTGAAGTTGGATTTTAACCAGCTCAAGGCCCTTCCTGAAGCAATTGGGAAGC TAGAATCTATGGAGATTCTCACTTTGCACTATAATAGAGTTAAGAGGTTGCCTTCAACAATAGGTAATCTATGCAACCTG AAGGAACTTGATGTTAGCTTTAATGAACTCGAATTCGTGCCAGAGAACCTGTGTTTTGTAGTTACTTTGAAGAAATTGAA CTTGGGAAATAACTTTGCTGATCTAAGAGCCTTGCCAAGATCAATTGGGAATCTTGAAATGCTTGAGGAGTTGGATATAA GTGATGATCAAATAAGAGTTTTGCCAGAGTCTTTTAGGTTCTTGTCGAAGTTGAGAATTTTCAAAGCTGATGAGACTCCT CTTGAGATGCCACCAAGAGAAGTGATCAAGTTGGGTGCTCAGGAAGTTGTGCAGTACATGGCTGATTATGTCGTTGAGAG GGATGCAAACCTTTTGCCATCAAAGAAGAAAAAGAAGGGATTTTGGTTCTGGTTTTGCTCTATATTTTGCCCTCAACAGA AATGA
Protein sequence (LotjaGi4g1v0187700.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MPHHSEKDPSSSPQPPSRAILDTVQEITTIYRSLPPRPSVQELEAATSTVDTVNNVEQTKLHEISVQKPPHDVPQELFSV LQQVKKTMVLFQSQEQRREALYLLEIEKMFQTFGDLILKASDLVSGDGDSHSQNQLQKLPTIHEHLETISTLDDGILMRK EEEEEGEQQKSDLGVEKGFSVSKAFLSAGDGSPAKLSLMKVATVVENCAKSGDTILDLRGKLVDQMEWLPVSIGKLSDVT EVNLSENRLMALPATIGGLKALTKLDLHSNQLINLPQSFGELINLVELDLHANRLKSLPTTFGNLTNLTDLDLSSNAFTQ LPETIGSLSSLKRFIVETNELEELPYTIGNCSSLSVLKLDFNQLKALPEAIGKLESMEILTLHYNRVKRLPSTIGNLCNL KELDVSFNELEFVPENLCFVVTLKKLNLGNNFADLRALPRSIGNLEMLEELDISDDQIRVLPESFRFLSKLRIFKADETP LEMPPREVIKLGAQEVVQYMADYVVERDANLLPSKKKKKGFWFWFCSIFCPQQK
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 13 | 533 | 521 | 5.0E-252 | – | |
| PANTHER | 13 | 533 | 521 | 5.0E-252 | – | |
| Gene3D | 208 | 506 | 299 | 8.2E-70 | ||
| SUPERFAMILY | 214 | 477 | 264 | 6.12E-56 | – | |
| SMART | 236 | 258 | 23 | 49.0 | ||
| SMART | 259 | 281 | 23 | 5.3 | ||
| SMART | 259 | 278 | 20 | 26.0 | – | |
| ProSiteProfiles | 261 | 282 | 22 | 6.672 | ||
| SMART | 282 | 304 | 23 | 0.048 | ||
| SMART | 282 | 301 | 20 | 430.0 | – | |
| Pfam | 284 | 341 | 58 | 3.0E-8 | ||
| ProSiteProfiles | 284 | 306 | 23 | 7.042 | ||
| SMART | 305 | 324 | 20 | 120.0 | – | |
| SMART | 305 | 327 | 23 | 0.31 | ||
| ProSiteProfiles | 307 | 328 | 22 | 7.134 | ||
| SMART | 328 | 351 | 24 | 23.0 | ||
| SMART | 328 | 347 | 20 | 50.0 | – | |
| SMART | 351 | 370 | 20 | 38.0 | – | |
| SMART | 352 | 373 | 22 | 110.0 | ||
| Pfam | 352 | 410 | 59 | 1.5E-6 | ||
| ProSiteProfiles | 353 | 374 | 22 | 5.71 | ||
| SMART | 374 | 396 | 23 | 20.0 | ||
| ProSiteProfiles | 376 | 397 | 22 | 5.286 | ||
| SMART | 397 | 420 | 24 | 0.42 | ||
| SMART | 397 | 416 | 20 | 14.0 | – | |
| ProSiteProfiles | 399 | 420 | 22 | 6.249 | ||
| SMART | 420 | 441 | 22 | 140.0 | – | |
| ProSiteProfiles | 422 | 442 | 21 | 5.209 | ||
| SMART | 445 | 467 | 23 | 87.0 | ||
| SMART | 445 | 464 | 20 | 160.0 | – | |
| ProSiteProfiles | 447 | 468 | 22 | 5.494 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of LotjaGi4g1v0187700.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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