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| Field | Value |
|---|---|
| Gene ID | LotjaGi4g1v0188000 |
| Transcript ID | LotjaGi4g1v0188000.2 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Zinc finger protein LSD1; TAIR: AT1G32540.2 lsd one like 1; Swiss-Prot: sp|Q0J7V9|LSD1_ORYSJ Protein LSD1; TrEMBL-Plants: tr|I3S8Z8|I3S8Z8_LOTJA Uncharacterized protein; Found in the gene: LotjaGi4g1v0188000 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:42838482..42839833) extracted from Lotus japonicus Gifu genome v1.2.
ATGCCAGTTCCACTTGCCCCCTACCCTACTCCACCAGCTCCATACACACCACCAACAAACGGTATCTTGCTTGACCTGTG CTTGATTTGCTCATTCATGCGTGTTCTCTATTTGAATTCTTATCAAGGAATGGTTGGAGATTTGAATTTTTTGAATTTTT ATTTCTTTTCCATCATTTCAAGAAAACAAAATTAAAGAATCTAGTGTCCAATTTTAATACTTATACTGTAGAAGCAAGTT ATTTGATAAAATGACTGAGTGAGGAGTTAGGAGTATAAAGTTGTGTCACACATGTTACCATGTTGACAGAAAAACACAAT TTCACTTTCCTGTTAGCTAAAGGGAGAAATGGTGGACTATATATGAAGATATTCTCAGTGAAATTTCTCTGCGACTCTGA TTTGGGTGGAATGTGTGGATTTGAGATAGCTGGTGATATATCTTTTCTTGGTGCAGTTCTATGCAGAACCTTTAGATAGG TTGAATGCTGCACAACCTTTGCTCATCTCTTTGATAATTAAAATTGTTTGTCAAAATGCTCCTTTCTCAGGTGCACAGAG TCAACTTGTGTGTTCTGGGTGTAGAAACCTTCTAGTCTATCCAGTTGGAGCCACCTCTGTGTGCTGTGCAGTTTGCAATG CAGTCACATCAGTGCCACCTCCTGGTATGATGCAGTTTCTCCTCACTAGGTCTCTACACTCTGTATAATTTCTTGTTTGC AGCTTAGTTAATGAATGTTTGGAAATCCTTCTACAATTGATCCTTAAGCCTGAATCAATTTTGGGGAGACTCTGGATTTC AGAATTGATTCCGAGGAAAGAATAATTAAACCAAACATTTAGAAGTTCAATTTGCTACTATATATATACCACTATTTTGA GTCAACTGAACATAAGACAGCAAAATCACAAGCATTTATGTGTGCACAGGCACAGAAATGGCCCAGTTAGTTTGTGGAGG TTGCCACACTTTACTCATGTACATCCGGGGAGCTACAAGTGTGCAATGCTCTTGTTGCCACACGGTCAATCTAGCTTTGG AAGGTATTGAACTATTAATGGTCTCATTCATGAGCTTTAAAGAATTGTACATGTGTTTGCATGATTGAAGCTTTGAAATT AAACATGTTTCTTTAGTGAGACAAAAATCATTATGATTTGAGTCCTTACTTTGTGTGTAAGCATCAAGTGTTTATTTTGA CAGCAAATCAGGTAGCACATGTCAATTGTGGGAACTGCAGAATGCTCCTCATGTACCAATATGGAGCAAGATCCGTAAAA TGTGCAGTTTGCAATTTTGTAACCTCAGTTGGGGTCAGTATAATCTCCATTTCCTTAGCATATTTGGATTAA
CDS sequence (LotjaGi4g1v0188000.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGCCAGTTCCACTTGCCCCCTACCCTACTCCACCAGCTCCATACACACCACCAACAAACGGTGCACAGAGTCAACTTGT GTGTTCTGGGTGTAGAAACCTTCTAGTCTATCCAGTTGGAGCCACCTCTGTGTGCTGTGCAGTTTGCAATGCAGTCACAT CAGTGCCACCTCCTGGCACAGAAATGGCCCAGTTAGTTTGTGGAGGTTGCCACACTTTACTCATGTACATCCGGGGAGCT ACAAGTGTGCAATGCTCTTGTTGCCACACGGTCAATCTAGCTTTGGAAGCAAATCAGGTAGCACATGTCAATTGTGGGAA CTGCAGAATGCTCCTCATGTACCAATATGGAGCAAGATCCGTAAAATGTGCAGTTTGCAATTTTGTAACCTCAGTTGGGG TCAGTATAATCTCCATTTCCTTAGCATATTTGGATTAA
Protein sequence (LotjaGi4g1v0188000.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MPVPLAPYPTPPAPYTPPTNGAQSQLVCSGCRNLLVYPVGATSVCCAVCNAVTSVPPPGTEMAQLVCGGCHTLLMYIRGA TSVQCSCCHTVNLALEANQVAHVNCGNCRMLLMYQYGARSVKCAVCNFVTSVGVSIISISLAYLD
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 135 | 135 | 3.0E-76 | ||
| PANTHER | 1 | 135 | 135 | 3.0E-76 | – | |
| Phobius | 1 | 122 | 122 | - | – | |
| TIGRFAM | 25 | 55 | 31 | 1.1E-12 | ||
| SUPERFAMILY | 28 | 126 | 99 | 5.16E-5 | ||
| Pfam | 28 | 52 | 25 | 1.5E-10 | ||
| TIGRFAM | 64 | 93 | 30 | 8.7E-15 | ||
| Pfam | 67 | 91 | 25 | 1.6E-12 | ||
| TIGRFAM | 102 | 132 | 31 | 4.0E-12 | ||
| Pfam | 105 | 129 | 25 | 1.2E-12 | ||
| Phobius | 123 | 144 | 22 | - | – | |
| Phobius | 145 | 145 | 1 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi4g1v0188000.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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