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| Field | Value |
|---|---|
| Gene ID | LotjaGi4g1v0189800 |
| Transcript ID | LotjaGi4g1v0189800.1 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Ribose-phosphate pyrophosphokinase; TAIR: AT2G35390.2 Phosphoribosyltransferase family protein; Swiss-Prot: sp|Q42581|KPRS1_ARATH Ribose-phosphate pyrophosphokinase 1, chloroplastic; TrEMBL-Plants: tr|I3S2I7|I3S2I7_LOTJA Uncharacterized protein; Found in the gene: LotjaGi4g1v0189800 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:43488623..43492313) extracted from Lotus japonicus Gifu genome v1.2.
TAAAAAGCCAAATCTCGTGAAGGAACATTGACGCGCCACGGCTACCATAGCTCGAAATTCGCTCTGCTCTGCTCGAAGCA CCTTTTCTCTCTCTCTTTCTCTCTCTGTGTGTTTTGCAGAGAAAAAAGGGAAGAAGACAAACCCTAACGCTAACGCTAAC GCCGACGCGTCCTCGCGGTGGTTCCTTCACGCATGGCTTCCTCACTCCTTCAACCCTCGCCGTCTTCGACCATGTCCTTT GCCTCTTCCACTTCTTCTTCTCTCTTCACTGCCACCTCCCACGCTCTCCCAACCTTAGGTTTCGTTGATTGTTCCCGCAC TCGAACCCTCGCCTCTAATGGCGTGGTAACTAATCATCCATTTCAATTGTTTTCCCTGCATTTTCCAATTGGACTTGAAT TTTTGTGTTTTATTTATTTATTTCAATGGCTGTTTTGTGTTTGTGCCAGAAATGTGATATGTCTGAACCGTCGAATTTCG TGAACGGGAAGCCGATTGTTCCCGTTCTCAACGAACAGACGCTGCCCAAGTTCATGGAATCGGCGAGGAAGGAGAAAGCC GTCAGTAGAAACGGTAACAGGTTGAAATTGTTCTCTGGCACAGCCAATCCTGCACTGTCTCAGGTAGTTCCACTGTTCTA TACTTTAATGTTGAATTTTTAGTCAAATTATTGTATAAGATTTCAAATTTGCTTGTATTAAATTTAAATCAATCCCATTG TGAGGACCTTGGGACTAGTTTAACTTGTGAAATACATATTTTAGGACTAACTGATTTGAGTGAAGAAATATACAGTCAAG AGCATCAGTGTAAATTTCGTGATTTGTCGCTCACACGATTTGTGTAATATTTGATTTTTTTTACTCTACTGATGACTATA GAAATATACATCTTGGTTTGTTTAATTCAGAAACTGATTGGCTTCAGTGTTGTCAAATAGCGGATGTCGCGGTGCTATAG CGTAGCGCTCTGAGGGCTCACTGCTATCCGCTATTTGCCGCTTTGAGGGCTTGCCATTGCGGTTTTTTGGCTTTCCGCTA TTTTCCGCAATCTGCAATTAACAACATTCAGACCTTTTGTTCCCCTGCCACATTGCATATTTGTTATGAACTTATGATTC ATCTTCCATTTGGGCAGGTTTCTGCTGTTTTTTTTTCTAACTCCATGTTGCTTCAACTGTAGGAAATTGCTCGGTACATG GGCTTGGAACTTGGGAAGATTTCCATAAAGCGATTTGCAGATGGTGAAATCTATGTCCAGTTACAAGAGAGTGTTAGAGG TTGCAATGTATACCTTATACAGCCAACAAGCCCTCCTGCAAATGAGAATCTCATGGAGCTTCAAGTAATGATTGATGCTT GTAGGAGAGCATCAGCCAAGAATATCACTGCTGTGATTCCATACTTTGGATACGCCAGAGCAGATAGAAAGGCAAGTATT TTGCATTTTACTGATTTACAGCTAACTGGTGTAATCTTTTATAATGCTTGGGTTTATATGGTTCTACACATCCACACACA ATGGCAGGCAGGATTCTCCCACTCATCGGTTTCCCGCTTTATAATACTTTTGTTCTTTGTTCTGAGTGATTTATGTTGAA TTCCCCTCCACCTGGCCTCCTGCCATCTGTCATGTTTGTAAACATTTACTAGAGCTTTTTTTTTATCTTCCTTTACAGAC TCAAGGACGTGAATCAATTGCCGCTAAACTTGTTGCAAACCTTATTACCAAAGCTGGGGCAGACCGTGTTCTTGCTTGTG ACCTTCATTCAGGGCAGGCCATGGGTTACTTTGATATTCCTGTGGATCATGTACGATGCCAAGTAAGTAAGAAATCTCTG AATGATTGTAGTTTATTTTTTCACACCGTGTTTACTAAGACTTTTGTTTATGATGTCCTCCAGCCTGTGATCCTTGATTA TCTTGCTAGCAAGACAATTAGTTCAAATGATTTGGTGGTTGTTTCCCCTGACGTTGGTGGTGTTGCAAGAGCTCGTGCTT TTGCAAAGAAATTATCTGATGCACCTTTAGCTATTGTAGACAAAAGGCGCCACGGGCACAATGTAGCTGAGGTAATAACC GCAACAAAAATCCATGCATTGTACGTTGCATTTCTTCTGGAGTTCCCATTTATGAAGGATTTACCTTCTAAAAGGATCAT CATTATACTCATATAGTATGCTTGTCAATGGTTATATATTTGAGTGCAGTGAATTATTTTGGTCATGGGGCAATCTGAGT TGCATTTGTATTTTCCGGGGATGAGGAGGCCTTTTTTATCGTTATTTTTGGATGTCGGCATGGTTTAGCATGTCTTAGTA TTATAAGATACTAGTTCTCCTCGGGGATTAATTGAAGTTAACCAAATTGATGTTTCAGCTATATTTATCTGCTTATGTTT CCCCTGCAGGTGATGAACCTGATTGGTGATGTAAAAGGAAAAGTTGCAGTAATGGTGGATGATATGATTGACACTGCTGG TATGCCATCTTCAGTGTCCAATTTAACATTTGAAAAGAAGGATTTCTTTCCTGTGATTTTTTGTTGCATTTAGTGGTTAC TTGTTGAGTCAAAAAAATATGACTAAGCAAACTAATACTCTTATTGTCTTTATAAACTTAAGCTATCATACGAAGTTTGA TGGACATTTTAGATCTCCTCTTAAAATCATTTTCTCTATATTGTTGCTCTGCTACTCTACCTTTCAAATGTCTTACAGCA TATTTTGGTGTTCCTAATTTTTCAAGTATTTGTACAGAATTTACTTAAAAATGTGTTCTTTCAGAAAACTGTTGAAGGTA ACTTTAGGATTAATCATTAAATTATAAACATCATCAAAGTGGAGCTTTTGCTCGTTCTTGGTAATGTGTAAAATTAGTTT GGTTAACTTAATATATTCCTGAAAATGTCAGATAATGTCTCCCACATACATGGGAAAGTTGGGATTCCCACACTCCCCTT GAGAATGTTTTGCCAAGAATGTTGATCAAAAGTCAAAACATGTTCAAAACAGAATTCCGGAAATGTATGTCTCAGGGGAA TATTGTTTTTTGAAAATAAATTTTCTTATTCTAATTCTTATGGACCTTAGGAACCATTGCAAAGGGTGCCGCACTATTAC ATGAAGAGGGAGCCAGGGAAGTTTATGCATGCTGCACTCATGGTGTTTTTAGGTATTATTGCCATCTGTTCTACTTTTAG TTTTGATTCTTGTTCTTTTATTATTCTAATCCATTGTAAATGTTGCCTGAGGCATTTACATTCTGCATTATACATGAACA AGTATTCATATTATGCTTTTGTATAATTACAGCCCTCCTGCAATTGAAAGGTTGTCCAGTGGCTTATTTCAAGAGGTGAT TATTACAAACACCATTCCAGTTCCAGAGAAGAACTATTTCCCGCAGTTAACTATTCTTACCGTAGCAAACCTGTTGGGTG AAACTATTTGGCGTATTCATGACGATAGTTCAGTCAGTAGTATTTTTCAGTGAACAATCCTAATTAGCTTTTGCGCTTAA TTTAACGAATAAATGTTTTGTTTATTTTAGTGCCAGTTTTTTGTTTTCATCTAATTTTAATTTTAGTTCTCGTGGATTAT TTTCTACACTGTTGCGGATGGTAATCATTTATAAATGAATTAGGCTTGGCAACTTCCCTGGGGATACTTCGTTCCAAAAT TATTGTTTAAG
CDS sequence (LotjaGi4g1v0189800.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCTTCCTCACTCCTTCAACCCTCGCCGTCTTCGACCATGTCCTTTGCCTCTTCCACTTCTTCTTCTCTCTTCACTGC CACCTCCCACGCTCTCCCAACCTTAGGTTTCGTTGATTGTTCCCGCACTCGAACCCTCGCCTCTAATGGCGTGAAATGTG ATATGTCTGAACCGTCGAATTTCGTGAACGGGAAGCCGATTGTTCCCGTTCTCAACGAACAGACGCTGCCCAAGTTCATG GAATCGGCGAGGAAGGAGAAAGCCGTCAGTAGAAACGGTAACAGGTTGAAATTGTTCTCTGGCACAGCCAATCCTGCACT GTCTCAGGAAATTGCTCGGTACATGGGCTTGGAACTTGGGAAGATTTCCATAAAGCGATTTGCAGATGGTGAAATCTATG TCCAGTTACAAGAGAGTGTTAGAGGTTGCAATGTATACCTTATACAGCCAACAAGCCCTCCTGCAAATGAGAATCTCATG GAGCTTCAAGTAATGATTGATGCTTGTAGGAGAGCATCAGCCAAGAATATCACTGCTGTGATTCCATACTTTGGATACGC CAGAGCAGATAGAAAGACTCAAGGACGTGAATCAATTGCCGCTAAACTTGTTGCAAACCTTATTACCAAAGCTGGGGCAG ACCGTGTTCTTGCTTGTGACCTTCATTCAGGGCAGGCCATGGGTTACTTTGATATTCCTGTGGATCATGTACGATGCCAA CCTGTGATCCTTGATTATCTTGCTAGCAAGACAATTAGTTCAAATGATTTGGTGGTTGTTTCCCCTGACGTTGGTGGTGT TGCAAGAGCTCGTGCTTTTGCAAAGAAATTATCTGATGCACCTTTAGCTATTGTAGACAAAAGGCGCCACGGGCACAATG TAGCTGAGGTGATGAACCTGATTGGTGATGTAAAAGGAAAAGTTGCAGTAATGGTGGATGATATGATTGACACTGCTGGA ACCATTGCAAAGGGTGCCGCACTATTACATGAAGAGGGAGCCAGGGAAGTTTATGCATGCTGCACTCATGGTGTTTTTAG CCCTCCTGCAATTGAAAGGTTGTCCAGTGGCTTATTTCAAGAGGTGATTATTACAAACACCATTCCAGTTCCAGAGAAGA ACTATTTCCCGCAGTTAACTATTCTTACCGTAGCAAACCTGTTGGGTGAAACTATTTGGCGTATTCATGACGATAGTTCA GTCAGTAGTATTTTTCAGTGA
Protein sequence (LotjaGi4g1v0189800.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MASSLLQPSPSSTMSFASSTSSSLFTATSHALPTLGFVDCSRTRTLASNGVKCDMSEPSNFVNGKPIVPVLNEQTLPKFM ESARKEKAVSRNGNRLKLFSGTANPALSQEIARYMGLELGKISIKRFADGEIYVQLQESVRGCNVYLIQPTSPPANENLM ELQVMIDACRRASAKNITAVIPYFGYARADRKTQGRESIAAKLVANLITKAGADRVLACDLHSGQAMGYFDIPVDHVRCQ PVILDYLASKTISSNDLVVVSPDVGGVARARAFAKKLSDAPLAIVDKRRHGHNVAEVMNLIGDVKGKVAVMVDDMIDTAG TIAKGAALLHEEGAREVYACCTHGVFSPPAIERLSSGLFQEVIITNTIPVPEKNYFPQLTILTVANLLGETIWRIHDDSS VSSIFQ
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| SignalP_GRAM_POSITIVE | 1 | 17 | 17 | - | – | |
| Phobius | 1 | 14 | 14 | - | – | |
| Phobius | 1 | 31 | 31 | - | – | |
| Phobius | 15 | 26 | 12 | - | – | |
| Phobius | 27 | 31 | 5 | - | – | |
| Phobius | 32 | 406 | 375 | - | – | |
| PANTHER | 56 | 405 | 350 | 1.4E-222 | – | |
| PANTHER | 56 | 405 | 350 | 1.4E-222 | ||
| Pfam | 96 | 212 | 117 | 3.7E-48 | ||
| Hamap | 96 | 406 | 311 | 48.254 | ||
| SMART | 96 | 212 | 117 | 4.2E-77 | – | |
| TIGRFAM | 97 | 406 | 310 | 4.6E-120 | ||
| Gene3D | 99 | 393 | 295 | 2.6E-121 | ||
| SUPERFAMILY | 161 | 397 | 237 | 9.3E-61 | ||
| ProSitePatterns | 220 | 235 | 16 | - | ||
| Gene3D | 239 | 382 | 144 | 2.6E-121 | ||
| CDD | 255 | 367 | 113 | 7.65617E-25 | ||
| Pfam | 298 | 405 | 108 | 5.8E-25 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Magnesium ion binding | Interacting selectively and non-covalently with magnesium (Mg) ions. | ||
| Molecular function | Ribose phosphate diphosphokinase activity | Catalysis of the reaction: D-ribose 5-phosphate + ATP = 5-phospho-alpha-D-ribose 1-diphosphate + AMP + 2 H(+). | ||
| Biological process | Nucleoside metabolic process | The chemical reactions and pathways involving a nucleoside, a nucleobase linked to either beta-D-ribofuranose (a ribonucleoside) or 2-deoxy-beta-D-ribofuranose, (a deoxyribonucleoside), e.g. adenosine, guanosine, inosine, cytidine, uridine and deoxyadenosine, deoxyguanosine, deoxycytidine and thymidine (= deoxythymidine). | ||
| Biological process | Ribonucleoside monophosphate biosynthetic process | The chemical reactions and pathways resulting in the formation of a ribonucleoside monophosphate, a compound consisting of a nucleobase linked to a ribose sugar esterified with phosphate on the sugar. | ||
| Biological process | Nucleotide biosynthetic process | The chemical reactions and pathways resulting in the formation of nucleotides, any nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the glycose moiety; may be mono-, di- or triphosphate; this definition includes cyclic-nucleotides (nucleoside cyclic phosphates). | ||
| Biological process | Cellular biosynthetic process | The chemical reactions and pathways resulting in the formation of substances, carried out by individual cells. |
Expression pattern of LotjaGi4g1v0189800.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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