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| Field | Value |
|---|---|
| Gene ID | LotjaGi4g1v0192100 |
| Transcript ID | LotjaGi4g1v0192100.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | SBP (S-ribonuclease-binding protein) family protein; TAIR: AT1G32740.1 SBP (S-ribonuclease binding protein) family protein; Swiss-Prot: sp|Q9LDD1|BRG3_ARATH Probable BOI-related E3 ubiquitin-protein ligase 3; TrEMBL-Plants: tr|A0A151S9L5|A0A151S9L5_CAJCA Baculoviral IAP repeat-containing protein 2; Found in the gene: LotjaGi4g1v0192100 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:44069277..44073612) extracted from Lotus japonicus Gifu genome v1.2.
AGTAGTAACTAGTAAGTAATTATAGTAAAAAATTGATGGGCATATTTTGAGGGAAAGTATTTAAATGATATTATTATTGG TGTAAGGAAGGAAACAACAACAAACACGAGAGAGACCACTTCTAAAGAAAAGCCAACTCCACCCGAGGAAGAAGAGAAAA GAGAGAGCCAGCAGAATATTAAGGTGCCTCTCTCTTGGACTGATTCGCTTCATTCGCATCTCTATTTCTATTTCATCCCC ACCTCTTCTTCTACTATACCATTACCCTCTCATCTCATCTCATCTCATCTTTCTATCTTCATTCTTTTCCCTCAAAACAA CAACAAACATCAAAGAAGAAAAACATAGTTTTTGCTGCTTAGTTGAATTCATGGCCGTTCAGGCTCAATATCCATCCAAT GTCCTCCTTCTAAACAACAGGTTTGCATTTTTCTTCTTCTTTTTCACCTTGCATATTCATGTACCCTTTTCAATTCTATA GATTACAATTCATCTATCTTCTCTAGAAACGGGCAAGAAGCACATCATGAGTACTCATTACAACCACAACCTGGAGGACT AATTGATCAATCTCACCACATGCTATACAACAACAATAACAATGGTAATAGTTGGATATAGACCCTCTCTTTCATTCAAT TTACACAATCCAAATAATTTTCTACATCAAAACTTTGGTCTTATCTCATGTTTTTCATTTCATATCAGGTACTAATTCCC GCAAGAGAGGCAGAGAAGTCACAGGAATTGGCCATACAACAACATCAACAACCCCAAGTAATGGTATCATGAACCAATTC TCTTTGCAATCTCAGCCTCCACAACTTATAAACCTCTCTCAACTCCATAATCATCAACAAAATGGGGTTTCAACTGGGTT ATGCTTATCCTTTCATGACCATCAAAATCAACAACAACAAAGACTTCATCAAAATCAACAACAAAATGGGTGTCACTCCT CTGCATTCCTATCTCTATTATCTGAAGGTTTTGCTTCACAAATCAAACAACAGAGGGATGAAATAGACCAATTGCTTCAA GCACAGGTATGAATTTTTCTTCATTCTGATTAGCCCATGAAGAAAAATCAAATCTTCCTTATTAGGAATTTTAGAGTGAT GGTGTCATGTGGGAATACCAGGGAGAGCAACTGCGGCGGACATTGGCGGAGAAGAGGCAGAGGCATTACCGAGCGTTGCT ACAAGCGGCGGAGGAGACGGTGGTGCGGCGGCTGAGGGAGAAGGAAGCCGAGGTGGAGAAAGCCACGCGCAGGAACGCGG AGCTACAAGCACGCGCCGCGCAGCTGAGCGTGGAGGCGCAGGTGTGGCAGGCCAAGGCCAGGGCGCAAGAGATCACGGCG GCGTCGCTCCAGGCACAGCTTCAGCAGACAATAATGTGCCACGGCGGTGGCGACGACAACGGCGGCGGAGGAGGTGGAGG CGGTGTCTCGTGCGCTGTGGAGGGCCAGGCGGAGGATTGCGAGTCGGCGCACGTGGACCCGGTCAGAGTGGCGGCGGCGC GTCCGAAATGCAGAGGGTGTGAGCGGCGCGTGGCATCGGTGGTGGTTCTTCCTTGTCGGCACATGTGCATTTGTGCAGAA TGCGATGCGCATTTCAGAGCATGCCCTGTTTGCCTCACCCTCAAGAATTCAACAGTTGAGGTCCTTCTCTCTTAGCAACA TGAATTTACCAAATTGCCCTCCACATCAATGTCCATAGTACTTAAAAAAATCACCACAAATTTTCTGATATAAAAAAAAA CAAAATTAATAAAATTACATTTTTGTTTCTCTCTTATGAATTTCTTGAAGAAATCTGGTTGTAGCAGATTTACCTTCACT TGATGTACATGGCCACATGGGTAGAAGTGGGATTTTCTTTTATTTTATTAATTTATTTATTTTTGTTATTTCTCTATCAG AAATTATATATATTATTGATATATTATATTCTTTCATTAATTGGATGGGTGTTGTTTCTTTGTTACCCTGATGATGGTGA TGATGATGATGGCTTCTTTCACTCAATTTTTATAATGTCAATGGTCGAAAATGGTGCAGAGTATTGAGAATGGTTTGTTG ATTCAGCGTGCTTGTGAGAGTGATGCTTGTTTGTTTGTTGGGAATAATCAAAATTGCGTGTTAGATTGGATGTTTGCCTT TTCTTTTCATTGATTCCATGAATGGCATCACTCAGGTAAGTATGGTTGGTTCTTCACCTGTCAATTTGAGGGGTAATGTA TGTGTATGCGTGTGCATGCAGGTAACAAGTTTTAACTTGCAAGGCATTAGATTAGATTAGACATGGTTTTTGTTTGCACA GCTAGAATGAAAGTAGTTTCAGATGCAATGAAATTATTATTTTTAACTGAAGTTGGTTGCCTGCCTGCATTCTCAAGGTT CCAATTATTGGGTAGGAAAAGGCCATGGCACATTCTTCTGATAAATAAATTCTTGCGTTGGAAATCATATTAAGTGGTTA GGTTTCATCCCGCAAATATTTTATCACTAGCATTGTTGAGTGTAGATTAGTTATATTATTTAACGGTAAATCTCTTAATT ATTAGATCCATAGTTTTCTTTTACTTGTAATACAATGTTGATTGAAAATCTAGTGTTTAAAATTTGAAAAATCTTATAGA AGAGGGTATTTTCAAAACCTAAACCGAATTCTGAAGTAATTACCTTGAAAACTTAAGGGTATTTTGGGAAGTTGAGTTGT GGGTGATGATATTGTTAGGTTTGCGATTGCCTTTAGTTTTGCCCGTCGATGAAAGGTATCCCCTTGTGGGTGAGCCATAC TAGACAAATGGATGGGCTCATACTTCAAAAGAGATTGTTGGAGTGTCGTGTGTGGTTAAAAAGATTTATATTTGATGACA ATATATTTTTGTTCAGTAGATGCATACATCTAACATCTTAAGTTTTTTTTTTACAAGATGTTGTGTCCTTCTTATTATTG TTGTAGTTAGCAATTAATTCAGTTATGATCACTAGGTGGTTAATAAGGTGTATGTCAATGGTTAGTTGTGTACGATAAGT CGTAGCATTGTCAGTACTTTCTATAAATCAGAGTATAAAAGTAAGTTCTAATGTGAAATGATAACAGAGCGTTCATTTGC ATTAAATCTTTCTCTCTCCATTCTCTCCGTGTGTGTGAATTGTGATACTTTGTAAATAATTCACTACACCTAAGTGAGAG GTATTCTAACAAGTGGATTGAGAGCTTGGTTCCCATTTTGGTGATCATTTTTCTGCATCATAATGGCAGCAATGAATTAG AATTATACAACTTCTCTTCACGTGGGAAGAATTATGAGAAGTGGTTCATTGAGATGAGTGTCAAATTTTGATATCACGAT TGGACAATGATGTTTAAGAATTGGGAGGGAATCCAACAAAAGCATGGAGGAATTCTCATCGTGAATCCAAGAAGAAAGAT TGCAAAGCTTTGTTCTTGATTCATCATGGTGTGGATTCTACAAATTGTGATAAGATTTCTCACCATTTTGTTCGAACGAA GCCTTGAAAATTCTGGAAAAATGTTGGGTCGGCGATACATTGAAGAAGGTGTAGTTGCAAATGTGGAGAGCATATGAGTT GCTGCGAACGGAGGCACATGAAACAATGGCTTATTAATTCACCGAAGTGTGATCTCTCTCCAACGAGATGGAGGCGTGTA ATGAGATTCTCACGGATAAAAAAATGGAGAAAATCTTGAGGTTATTAAGTCCAAGATTCGATCATATCGTTGTTGCAATA GAAGAGTCAAATAAGTTTTGAAGATAAAGGAGTTGTGGGGATCTCGTGAGGCCCACGAACAGAGGCTCAACGAGAGAATT TGTTGCATTGTTCTTCTCACGTGGTACATAGACCACAACAACATCCCACTCCCATTTAACAATCATCTGAACTTGCAATT CCTTGTGAACCAGCTCCCAAACCATTCAGAAGAACCTCAACCACCTTCAAGCAACCAGAAGGACAAGACATGACCTTGTG ACCCAGCTCCCAAACGTGCTTGAGTCTTAGCTCCACTGCTATCAACTATGAGAGAAAGGAGCTTCCATGGTTGAAACTGC TCCGAACAACCGCTACGCGACCTATTCGATTGAAATCAGGACGGAAGGTGCCATTGACGGCGACATGGACAGTTGTGCTC GCGAAGGGAGTCGCGACAACACTAGTCCTACTGGAACCCGCCGTTGTGACGCTGGTATGCATATCCATATGAATCAGCTG CAATACATTATTGAAAGGCCAAGGGCTATCCAAGAAAATACAGATGTTTTGTCACCTCCAAACCACCATATGACCGTGAG AGCAAGGAGTCTTTGC
CDS sequence (LotjaGi4g1v0192100.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCCGTTCAGGCTCAATATCCATCCAATGTCCTCCTTCTAAACAACAGAAACGGGCAAGAAGCACATCATGAGTACTC ATTACAACCACAACCTGGAGGACTAATTGATCAATCTCACCACATGCTATACAACAACAATAACAATGGTACTAATTCCC GCAAGAGAGGCAGAGAAGTCACAGGAATTGGCCATACAACAACATCAACAACCCCAAGTAATGGTATCATGAACCAATTC TCTTTGCAATCTCAGCCTCCACAACTTATAAACCTCTCTCAACTCCATAATCATCAACAAAATGGGGTTTCAACTGGGTT ATGCTTATCCTTTCATGACCATCAAAATCAACAACAACAAAGACTTCATCAAAATCAACAACAAAATGGGTGTCACTCCT CTGCATTCCTATCTCTATTATCTGAAGGTTTTGCTTCACAAATCAAACAACAGAGGGATGAAATAGACCAATTGCTTCAA GCACAGGGAGAGCAACTGCGGCGGACATTGGCGGAGAAGAGGCAGAGGCATTACCGAGCGTTGCTACAAGCGGCGGAGGA GACGGTGGTGCGGCGGCTGAGGGAGAAGGAAGCCGAGGTGGAGAAAGCCACGCGCAGGAACGCGGAGCTACAAGCACGCG CCGCGCAGCTGAGCGTGGAGGCGCAGGTGTGGCAGGCCAAGGCCAGGGCGCAAGAGATCACGGCGGCGTCGCTCCAGGCA CAGCTTCAGCAGACAATAATGTGCCACGGCGGTGGCGACGACAACGGCGGCGGAGGAGGTGGAGGCGGTGTCTCGTGCGC TGTGGAGGGCCAGGCGGAGGATTGCGAGTCGGCGCACGTGGACCCGGTCAGAGTGGCGGCGGCGCGTCCGAAATGCAGAG GGTGTGAGCGGCGCGTGGCATCGGTGGTGGTTCTTCCTTGTCGGCACATGTGCATTTGTGCAGAATGCGATGCGCATTTC AGAGCATGCCCTGTTTGCCTCACCCTCAAGAATTCAACAGTTGAGGTCCTTCTCTCTTAG
Protein sequence (LotjaGi4g1v0192100.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MAVQAQYPSNVLLLNNRNGQEAHHEYSLQPQPGGLIDQSHHMLYNNNNNGTNSRKRGREVTGIGHTTTSTTPSNGIMNQF SLQSQPPQLINLSQLHNHQQNGVSTGLCLSFHDHQNQQQQRLHQNQQQNGCHSSAFLSLLSEGFASQIKQQRDEIDQLLQ AQGEQLRRTLAEKRQRHYRALLQAAEETVVRRLREKEAEVEKATRRNAELQARAAQLSVEAQVWQAKARAQEITAASLQA QLQQTIMCHGGGDDNGGGGGGGGVSCAVEGQAEDCESAHVDPVRVAAARPKCRGCERRVASVVVLPCRHMCICAECDAHF RACPVCLTLKNSTVEVLLS
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PIRSF | 1 | 339 | 339 | 1.9E-88 | – | |
| PANTHER | 1 | 338 | 338 | 8.3E-107 | – | |
| PANTHER | 1 | 338 | 338 | 8.3E-107 | ||
| MobiDBLite | 45 | 75 | 31 | - | – | |
| Coils | 186 | 227 | 42 | - | – | |
| Gene3D | 271 | 339 | 69 | 1.4E-7 | ||
| Pfam | 290 | 327 | 38 | 1.3E-7 | – | |
| ProSiteProfiles | 292 | 326 | 35 | 9.332 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi4g1v0192100.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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