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| Field | Value |
|---|---|
| Gene ID | LotjaGi4g1v0192900 |
| Transcript ID | LotjaGi4g1v0192900.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Beta-amylase; TAIR: AT4G17090.1 chloroplast beta-amylase; Swiss-Prot: sp|O23553|BAM3_ARATH Beta-amylase 3, chloroplastic; TrEMBL-Plants: tr|I1K0Y6|I1K0Y6_SOYBN Beta-amylase; Found in the gene: LotjaGi4g1v0192900 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:44419710..44426930) extracted from Lotus japonicus Gifu genome v1.2.
CTTAACCGTGTTACTGAGCAACTGTTTTGTGGCTAATCAGTCCAAGTGCAGGTTTGGTTGTGGTCAGGTTGATTATCTGG GACATCTAATCTCAGGAAATGGTGTCGCAGTAGACCCTGACAAGGTGCACTGCATTGAAGCTTGGCCTGAACCCAAAAAT GTCAAGGGGGTGAGGGGCTTCCTGGGATTGACAGGCTATTACAGGAAGTTCATAAAAAACTATGGGAAATTAGCCAAACC ACTCACCGAGTTGACCAAGAAAGACAATTTCTCATGGGGGCCCGAAGCACAGCAAGCTTTTACCCTTCTCAAATCTGTCA TGACTACCTCTCCAGTCCTAGCCCTCCCCGATTTTACCCTTCCTTTTGAGGTTGAATGTGATGCTGCAGGGAGGGGTATT GGGGCAGTCCTGATGCAACAGAGGAGGCCCATAGCCTATTTCAGTAAAGCATTGTCTGCTGGAAACTTGGCCAAGTCAGT CTATGAGAAAGAACTGATGGCATTGGTACTGTGTATTCAACATTGGAGGCACTATCTGTTGGGGAGGATTTTTACTGTTT ATACAGACCACAAGAGCTTGAAACACTTCTTACAGCAAAGGGTTTCATCTCCTGACCAACAATGTTGGTTAGCCAAGTTG TTAGGATATCAATTCGAAGTCAAGTACAAACCAGGGCTGGAAAATAAGGCAGCTGATGCTTTGTCCAGATGCTTTGATGA GGGGGAGATGCACTCCTTGGTCTCTTTTCCTCTGTGGCAAGATAGGAAGAGACTATTGGCGGAGTTAGCTCAGGACTCTT ACATCCAGAACCTGACTGCAGAGGTCCTAAAAGACCCTCATTCTAAACCTGGGTTTGTGATTCAGCAAGGGATCTTGTTG TATCATGGAAGGCTAGTGCTATCACCTCAGTCACCATCTATTCCTTGGCTATTGGAAGAATTCCATGGTTCCCCAACTGG TGGCCATTCAGGTTTTTACAGGACATATAGGAGGCTGGCTGATTCTCTTTATTGGGTGGGAATGCAAAAGAGAGTCAGGA ATTTTGTGCGGGAATGTGAGGTGTGCCAGAGGCAGAAGTACAGTGCTACTACCCCAGGGGGCCTTCTCCAACCTCTCCCG ATTCCTAATGCAGTTTGGGAAGATGTCTCTCTTGATTTCATCACTGGACTCCCTAAATCTAAAGGCTATGAGGCTATTCT AGTAGTTGTGGACAGACTCTCTAAGTATAGCCATTTCATTCTTTTGAAGCACCCTTACACTGCAAAGTCTATTGCTGAAA TCTTTGCCAAAGAGATAGTGAGGTTGCATGGTATTCCTAGTTCTGTAGTCAGTGATAGGGATCCCATCTTTGTGAGCCAT TTCTGGTCAGAACTGTTCAAGCTTCAGGGTACAAAACTCAAAATGAGTTCTGCCTATCATCCTGAGACAGATGGCCAGAC AGAGGTCATCAACAGGTGCTTGGAGAGCTATTTGAGGTGCTTTGCTTCTGATCAACCTAAGACTTGGTCTTACTGGTACC CTGGGCGGAATTCTGGTATAATTCCACCTTCCATACCTCCATTGGCCAAACCCCTTTTGAAGTAGTTTATGGGAGGAAAG CTCCTCCTTTGGTGAGGTTCCTTTCAAATGAAACTAAAGTAGCTGCTGTGGCCCTGGATTTTAGTGAAAGGGATGAAGCT ATTAAACAACTCAGAGAGCATCTTAAGAAAGCACAGGAACAAATGGCTAGCTATGCTAACAAGAAACGGAGAGACTTGCA TTTTAAAGTGGGAGAATGGGTTTTCTTAAAGCTCAGACCACATAGGCAGCAGTCAGTGGTCAAGAGGATTAATCAGAAGT TAGCTCCCAGGTTTTATGGGCCTTTCCAGATAGAGACCAAGATTGGTGCAGTTGCATACAAGCTGAAACTCCCTGATGGT TCTAAGATACATCCGGTTTTCCATGTGTCCCTACTGAAACAAGCCATTGGCAGCTCTCAGGTTCAGGGTCAATTGCCTAG GGACTTGGAGATTGATGACCTGAATGACATTTACCCTGAAGCAATCATAGGAACCAGGACTATTCGTCAGGGAGACAGTG AGGTGCACCAGAGTCTGATAAAATGGACTCACAAGTCTTTGGATGATGTCACTTGGGAAGACAATGCTGTATTGGCTGGT CAATTTCCTGATTTCTGCCTTGAGGACAAGGCTGTTTCTGAGGAGGAGGGAATTGATAGAGACCTGAATGTTAATTTGGG ATTGGGAAAGCCCAAAGTGTGGAAGGTTTACGTGAGGAAAAAGGGAAGAAAGGAGTGAGCTGGCAGAGTTAGTTATATAA GAGAATAATAGAGTGAGGGGAGGATGGGGATTCATGATCAGTTTTTCTGTTTGAGGAGAGAGAGTATCTTTCTTGTTGAG GGGAAGTCGTTAGCACTTCTTGGGTTGTTAGCTAGCTCTAACAATACCTTTTCTTTTCATTCTCTGTAATTGTTCTACTG ATCAATACAATTCCAGTTAAATTCCTTCTTAAATCCTTGTTATTCTCTACTGTTCTCTAAAAATCTCCATCAATAACCAT GAAAAATTGATGCCCATACGTTTTCAGTTAGATAAGAATGGAAGAGTTGGACACACGTAAGCAAGGGTCAAACAGAACAC ACAATTTTGCTTTTTAGCACTTTTTCCACTTTTCAAACAGAGCCCACCAATGTTGTCAACTTCAATTCCCCAAAGCCAAG TTCCTTTTCTATAAATAAAATCAAACATCTTCACCATTTCCTACAAACCTTCATTCATCTTAAAAAAAATGGCTTTAACA CTTCGTTCTTCAACCTTTTTCATTACTCAGAATGAAACCAAAGTCCTTAAAACTTCTGATGATGTTCCTTCCACAATCAG CTTTGCAAAATTTAAGCCATGTTTCCGTCTCCAAGCTAAAATGTCTATGCAAGAAGCACATCTCACCCGTGAGAACAGCT TGGGATCTGAAATAAGGAAAAATGAGAGAATGGAGCATCTGCATGCTCACTCTGTTGCTCACAACCACAGTGACTCAAAA AGGGTGCCTGTGTTTGTGATGCTGCCACTGGACACAGTAACAATGGGAGGAAGCTTGAACAAGCCAAGAGCAATGAGTGC TAGTTTGATGGCCCTGAAGAGTGCAGGAGTTGAAGGGGTGATGGTGGATGTTTGGTGGGGTTTGGTGGAGAAAGATGGGC CTTTGAAGTACAACTGGGAAGCCTATGCTGAGCTTGTGCAGATGGTGCAAACACATGGTTTGAAGCTTCAAGTTGTCATG TCTTTCCATCAGTGTGGAGGAAATGTAGGAGACTCCTGCAGGTATGTCACAGTACATGTTTCTATCTTTCTTGTAAAAGA TATTGTGAAATTTTTCCCCTTGTTGGATTTTGATGCTTCGAAACACTTTTTGAATTGATCCATGTTATGGAAAAGTAAGC AGCAACTAGCATGTTTGAATCAACTTATTTTTTTCCAGAACCATTTCTATCACCCAGAAGCTGTTAAAGCTTAACAGCTT CTTAGAATTGATTTTGGCTTTAGAATAAGGAAATCCAAACATATTATGGATATGAGCTAATTGATTTATGTTAGGAGTAA AACCAAGTAAAAGAACTTCTTTTACAATCTTCTTTTCATTGCTTTTTTTCAGCATTCCTTTACCCCCATGGGTTCAGGAA GAAATCAGCAAGAACCCTGACCTGGTTTACACAGACAGATCAGGGAGGAGGAATCCTGAGTACATCTCCTTGGGCTGTGA CACAATGCCTGTTCTTAAAGGAAGGACTCCCATCCAAGTATACGCCGACTACATGAGGAGCTTTCGCGACAGATTTCAAT CTTCCTTGGGCAGTGTTATAGTGGTAAGTAATACAATACAAACCATCAAACATAGACACTGATATAGGATACAGACACCA CAATACAATAAAATTTAGTATGCTAACTCAGTATTCTAATTCAAAAACGCCTATACTATTGCAGGAAATACAAGTAGGGA TGGGTCCTTGTGGGGAGCTGAGATATCCATCTTATCCAGAAAGCAATGGAACTTGGAGATTTCCTGGAATTGGAGAATTC CAATGTTATGACAAGGTAGGAAAACATTGTTTAACCTATTACCATACATTAATCCAAAAGCACGTTTACAAATGATAGAG TTTGAAAATATCTATTGACTAAAATGACTTGTTTTGTCATGCAGTATATGAGAGCGTCATTGGCGGCGGCAGCTGAGGCA ATTGGAAAGAAAGAATGGGGAACAAATGGTCCCCATGACTCTGGCCAATACAATCAATTTCCTGAGGATACTGGTTTTTT CAGAAAGGATGGAACATGGAACTCTGAATATGGACGATTCTTTATGGAATGGTATTCCAGCAAATTGTTGGAACATGGTG AGAAAATCCTTGTATCTGCAAAAGGAATATTCCAAACATCTGGGGTGAAACTATCTGGGAAAGTTGCTGGAATCCATTGG CATTACAGAACAAGGTCGCACGCAGCTGAACTAACTGCAGGCTACTATAATACAAGACATAATGATGGATATCTACCAAT AGCTAAAATGATGGCAAATCACGGAGTCGTCTTCAATTTTACCTGCATGGAAATGAAAGACAGAGAGCAACCGGAGCACG CCAACTGCTCACCGGAAGGGTTAGTTAACCAGGTAAAGACGGCAACAAGAACAGCCAAAGCAGAACTTGCAGGTGAAAAT GCATTGGAGAGATATGGTGCAGATGCATATGCTCAAGTTTTGTCAACTAGTAGGTCAGACTCCGGCAACGGGTTGGCTGC ATTTACATATTTAAGAATGAATAAGAAGTTGTTTGAAGGTGATAACTGGCGCCACCTAGTGGACTTTGTGAGAAGCATGT CTGAAGGTGGCCGGAAACAAAGGCTTTCAGACTCGGATTTGCAGGGTAGTGATCTCTATGTTGGGCATATCAAACGAACT CAGAAGGAGCACAAGAAAGAGGCTGCTCTAGTGTGAATGTAAATATTAATTAGCATGTTCAGGTGTCATGGTGTATAGTT AGCAGCATCATAAGATATTTTTTCATGGTGGAAGGGAAGAAGCTAAAGTAATGGCATATGCCACACCAAAACCTGAGATG ATCAAGATATTATTTTATTACATGTTAATGTATATAACTCCAACCATAGAGGAGAAAAACTTTATCTGCTGGTGTTATAA ACCCAATATACATACTCTTAGTGGAATGGAATATATTCAGCACCCCTTCTATGTTGTTGATTGGTTAATCCCTGGAAAAC ATATATTTAAATTCACCGATTTCATTTTCTCTCGATCTGTAAAACCTGTATAAACTAGGCACGTATCAATTGTTGAAAGA GAAAAATCTTCCCATGTTATATTTGAACATTCTTGTTGTGTTTCAGGTTTGGATTCCAATAAAAATAATGATGCAAACAC TAACATAATGCAAGCAAATAATAATCACTCGGAAGAGATGAAACTGGTACTACAATAACAACAACAAGAGTCTTATAGTC TTATCGCACTAAGTGAGAACGGCTATATGGATCACATTACATTTTTAGTGGGGCCACACATCCATCTTAATATTCTCACT TCTTCTATTCCAACTTTTTACACATGTTGACTCATTAATGCACAACAGTTCGCTACAATGAGGATAGTTGGTCTTATAGC GATTCAGTAAAACTTTCATTTGAGCTAGGTAGGAACTTTTTGGTCACAGGTGACTCTGATGCTTTTCTCCACCTTAACCA CCCCGCTTGAGTTTTGTGTGTAACAACTTTGTCAAGTTCCCCATCATTAGATATCGGTACTTAAACTTGAAACATGTGGT ATGTTGTCATTCCCAATTTTTACTTTCACATTACTTCTTACTTCTGACGTCTTACTGAAATTCTAATGCATTCATACTCC TTCCTAAAATTGCAATGAATATACCAGTAAAATAGCAAATAGTTTAACAAAGAAGGACAATATCTGTTTTTAAACTATTC AGGAAACAACTCCATTATTGATTATCAACACTTGTGGGAAGATATCAGATTGCTCATAACTCCTAAGAATAAATTCTCTC ACATTAAATTTTTACATGAGAAATTATTGGCTATCAACGATTCAGAGATGATATGATACCAGTCCTAAAAATGAACCTCT CATGTTGAGTTTTCATATAATCTTGCCGTGTGAGAGATGCAAAATTTTCTCCCATTAGATAATTCATCTCAGGCACTATA CTCATACCACTCCATGGCTTAGAACAACTTCTTAAATAAATCAATAATAACAAAGAAGATTGAATTGAAAACTTTCCTAT GTTCTCCCATCTCAAGCACAATAATCATACCACTCCATGATCTAAAAGTTCTTGTATAAATCAACAATATGATTAAATCA AACTAGGTAATTTTTAGGGATTTGAAAACTTTCCTATTCTCAAATAATTGAAAAAGAAAAAACTTTTTTAGCATAACTAC TGGATGTTGTACCCAATAAAAATGAGTCCTTCCAGAATCTCTCCCTCTAATATGACCATATCATTCTACTCAATAAAAAC TCCAACTTTCAGATTGCAAATGACTAAGCCAACCAAGAGGTTTACAAAGAAAGAGGCTTCTTCCCTCCAACCCCTTCAAC AACTCAAAAATACAGAAACCCAGAATCAACATCATCTACAAAATTGTTAAGGGAAGAGGGGTAGTGTGAGTTTTGAAGAC ATACATAATAACAAAACAGATTACTGTAACTATCATTCATGAGGTAGGGTTTCCGCGACGGAGGTCTTCGATGAGGTGAG AAAGCTCTTTGCGAGAGGATTCTCTACCGAACATGAATCCATACCTAACTAGCACCAATTTTTCAAAATTACTCATTGAT GAATTGTAATTGAAATTGAAGTTGCAGAGTGAGTGAGGAGAATGGTGAAGTGAATTACCAGAAGGAAATTGCAGAGAAAA CGCCAGCAGTGGCTATGGTCTGAACTAGTGTGATCCTCTTCTCCATTCACCGCTTTCTTTGGCTAAACCCAGATGAAATG CAATGCCCCCTCTTGTTTCCTTCCCTTCGTTTTTTGTTTTGTTTTAGCACAGTGAAGGTAAATCAATATGGGCCTTTCAA CACCAGCAGGCCCAACTTATGGCTCTCTAATACACTTTGTCTTTTGTCCAATAAAAAACCATATTTTGTCATTTTTTTAT TTGAAAAAAAAAGATTTTGTC
CDS sequence (LotjaGi4g1v0192900.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCTTTAACACTTCGTTCTTCAACCTTTTTCATTACTCAGAATGAAACCAAAGTCCTTAAAACTTCTGATGATGTTCC TTCCACAATCAGCTTTGCAAAATTTAAGCCATGTTTCCGTCTCCAAGCTAAAATGTCTATGCAAGAAGCACATCTCACCC GTGAGAACAGCTTGGGATCTGAAATAAGGAAAAATGAGAGAATGGAGCATCTGCATGCTCACTCTGTTGCTCACAACCAC AGTGACTCAAAAAGGGTGCCTGTGTTTGTGATGCTGCCACTGGACACAGTAACAATGGGAGGAAGCTTGAACAAGCCAAG AGCAATGAGTGCTAGTTTGATGGCCCTGAAGAGTGCAGGAGTTGAAGGGGTGATGGTGGATGTTTGGTGGGGTTTGGTGG AGAAAGATGGGCCTTTGAAGTACAACTGGGAAGCCTATGCTGAGCTTGTGCAGATGGTGCAAACACATGGTTTGAAGCTT CAAGTTGTCATGTCTTTCCATCAGTGTGGAGGAAATGTAGGAGACTCCTGCAGCATTCCTTTACCCCCATGGGTTCAGGA AGAAATCAGCAAGAACCCTGACCTGGTTTACACAGACAGATCAGGGAGGAGGAATCCTGAGTACATCTCCTTGGGCTGTG ACACAATGCCTGTTCTTAAAGGAAGGACTCCCATCCAAGTATACGCCGACTACATGAGGAGCTTTCGCGACAGATTTCAA TCTTCCTTGGGCAGTGTTATAGTGGAAATACAAGTAGGGATGGGTCCTTGTGGGGAGCTGAGATATCCATCTTATCCAGA AAGCAATGGAACTTGGAGATTTCCTGGAATTGGAGAATTCCAATGTTATGACAAGTATATGAGAGCGTCATTGGCGGCGG CAGCTGAGGCAATTGGAAAGAAAGAATGGGGAACAAATGGTCCCCATGACTCTGGCCAATACAATCAATTTCCTGAGGAT ACTGGTTTTTTCAGAAAGGATGGAACATGGAACTCTGAATATGGACGATTCTTTATGGAATGGTATTCCAGCAAATTGTT GGAACATGGTGAGAAAATCCTTGTATCTGCAAAAGGAATATTCCAAACATCTGGGGTGAAACTATCTGGGAAAGTTGCTG GAATCCATTGGCATTACAGAACAAGGTCGCACGCAGCTGAACTAACTGCAGGCTACTATAATACAAGACATAATGATGGA TATCTACCAATAGCTAAAATGATGGCAAATCACGGAGTCGTCTTCAATTTTACCTGCATGGAAATGAAAGACAGAGAGCA ACCGGAGCACGCCAACTGCTCACCGGAAGGGTTAGTTAACCAGGTAAAGACGGCAACAAGAACAGCCAAAGCAGAACTTG CAGGTGAAAATGCATTGGAGAGATATGGTGCAGATGCATATGCTCAAGTTTTGTCAACTAGTAGGTCAGACTCCGGCAAC GGGTTGGCTGCATTTACATATTTAAGAATGAATAAGAAGTTGTTTGAAGGTGATAACTGGCGCCACCTAGTGGACTTTGT GAGAAGCATGTCTGAAGGTGGCCGGAAACAAAGGCTTTCAGACTCGGATTTGCAGGGTAGTGATCTCTATGTTGGGCATA TCAAACGAACTCAGAAGGAGCACAAGAAAGAGGCTGCTCTAGTGTGA
Protein sequence (LotjaGi4g1v0192900.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MALTLRSSTFFITQNETKVLKTSDDVPSTISFAKFKPCFRLQAKMSMQEAHLTRENSLGSEIRKNERMEHLHAHSVAHNH SDSKRVPVFVMLPLDTVTMGGSLNKPRAMSASLMALKSAGVEGVMVDVWWGLVEKDGPLKYNWEAYAELVQMVQTHGLKL QVVMSFHQCGGNVGDSCSIPLPPWVQEEISKNPDLVYTDRSGRRNPEYISLGCDTMPVLKGRTPIQVYADYMRSFRDRFQ SSLGSVIVEIQVGMGPCGELRYPSYPESNGTWRFPGIGEFQCYDKYMRASLAAAAEAIGKKEWGTNGPHDSGQYNQFPED TGFFRKDGTWNSEYGRFFMEWYSSKLLEHGEKILVSAKGIFQTSGVKLSGKVAGIHWHYRTRSHAAELTAGYYNTRHNDG YLPIAKMMANHGVVFNFTCMEMKDREQPEHANCSPEGLVNQVKTATRTAKAELAGENALERYGADAYAQVLSTSRSDSGN GLAAFTYLRMNKKLFEGDNWRHLVDFVRSMSEGGRKQRLSDSDLQGSDLYVGHIKRTQKEHKKEAALV
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 547 | 547 | 0.0 | – | |
| PANTHER | 1 | 547 | 547 | 0.0 | ||
| Gene3D | 78 | 544 | 467 | 6.9E-204 | – | |
| SUPERFAMILY | 84 | 513 | 430 | 4.14E-188 | ||
| Pfam | 89 | 506 | 418 | 7.8E-171 | ||
| PRINTS | 120 | 134 | 15 | 4.9E-67 | ||
| PRINTS | 141 | 159 | 19 | 4.9E-67 | ||
| PRINTS | 163 | 184 | 22 | 4.9E-67 | ||
| ProSitePatterns | 167 | 175 | 9 | - | ||
| PRINTS | 245 | 254 | 10 | 5.1E-5 | ||
| PRINTS | 255 | 277 | 23 | 4.9E-67 | ||
| PRINTS | 330 | 349 | 20 | 4.9E-67 | ||
| PRINTS | 366 | 382 | 17 | 4.9E-67 | ||
| PRINTS | 383 | 394 | 12 | 4.9E-67 | ||
| PRINTS | 401 | 424 | 24 | 4.9E-67 | ||
| PRINTS | 404 | 414 | 11 | 5.1E-5 | ||
| PRINTS | 438 | 460 | 23 | 4.9E-67 | ||
| PRINTS | 486 | 500 | 15 | 5.1E-5 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Biological process | Polysaccharide catabolic process | The chemical reactions and pathways resulting in the breakdown of a polysaccharide, a polymer of many (typically more than 10) monosaccharide residues linked glycosidically. | ||
| Molecular function | Beta-amylase activity | Catalysis of the reaction: (1,4-alpha-D-glucosyl)(n+1) + H2O = (1,4-alpha-D-glucosyl)(n-1) + alpha-maltose. This reaction is the hydrolysis of 1,4-alpha-glucosidic linkages in polysaccharides so as to remove successive maltose units from the non-reducing ends of the chains. |
Expression pattern of LotjaGi4g1v0192900.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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